Wall clock time and date at job start Mon Mar 30 2020 05:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30781 * 125.72115 * 2 1 4 4 C 1.34430 * 109.32343 * 180.02562 * 3 2 1 5 5 C 1.50689 * 126.10466 * 179.97438 * 4 3 2 6 6 C 1.53007 * 109.47248 * 97.37350 * 5 4 3 7 7 C 1.50703 * 109.47221 * 180.02562 * 6 5 4 8 8 H 1.08005 * 119.99583 * 359.97438 * 7 6 5 9 9 C 1.37871 * 120.00057 * 179.97438 * 7 6 5 10 10 N 1.31519 * 119.99997 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 120.00074 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.46854 * 59.99872 * 11 9 7 13 13 H 1.48501 * 109.46771 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.46708 * 300.00030 * 11 9 7 15 15 C 1.33865 * 107.79135 * 359.97438 * 4 3 2 16 16 N 1.34405 * 125.72458 * 179.97438 * 2 1 3 17 17 C 1.46469 * 128.44009 * 359.88896 * 16 2 1 18 18 C 1.53291 * 108.69076 * 197.32991 * 17 16 2 19 19 C 1.53121 * 109.70271 * 309.23130 * 18 17 16 20 20 C 1.50712 * 128.67872 * 179.87644 * 15 4 3 21 21 H 1.08998 * 109.74975 * 76.13954 * 20 15 4 22 22 C 1.53007 * 109.74339 * 315.42580 * 20 15 4 23 23 H 1.08999 * 109.46918 * 90.02896 * 1 2 3 24 24 H 1.09001 * 109.47227 * 210.02480 * 1 2 3 25 25 H 1.08998 * 109.47331 * 330.03111 * 1 2 3 26 26 H 1.09003 * 109.47275 * 217.37073 * 5 4 3 27 27 H 1.09000 * 109.47222 * 337.37278 * 5 4 3 28 28 H 1.09006 * 109.46751 * 299.99513 * 6 5 4 29 29 H 1.08991 * 109.47286 * 59.99947 * 6 5 4 30 30 H 0.96993 * 119.99827 * 179.97438 * 10 9 7 31 31 H 1.09000 * 109.60426 * 317.09057 * 17 16 2 32 32 H 1.09003 * 109.60145 * 77.56905 * 17 16 2 33 33 H 1.08995 * 109.42915 * 69.29769 * 18 17 16 34 34 H 1.08995 * 109.43179 * 189.16164 * 18 17 16 35 35 H 1.08996 * 109.49703 * 189.86552 * 19 18 17 36 36 H 1.09002 * 109.49569 * 309.93016 * 19 18 17 37 37 H 1.09002 * 109.46899 * 76.89707 * 22 20 15 38 38 H 1.08999 * 109.47343 * 196.90469 * 22 20 15 39 39 H 1.09001 * 109.46993 * 316.90608 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2706 1.0618 0.0000 4 6 3.5602 0.6823 -0.0006 5 6 4.7557 1.5996 -0.0013 6 6 5.2738 1.7634 1.4290 7 6 6.4690 2.6813 1.4284 8 1 6.8239 3.1050 0.5005 9 6 7.1094 2.9800 2.6122 10 7 6.6769 2.4644 3.7422 11 14 8.5906 4.1184 2.6115 12 1 8.1953 5.4446 2.0727 13 1 9.0926 4.2782 3.9999 14 1 9.6607 3.5376 1.7613 15 6 3.5927 -0.6560 -0.0004 16 7 2.2918 -1.0911 0.0005 17 6 1.8921 -2.5003 0.0033 18 6 3.0923 -3.3504 0.4353 19 6 4.3189 -2.9743 -0.4005 20 6 4.7918 -1.5690 -0.0033 21 1 5.2364 -1.5963 0.9915 22 6 5.8219 -1.0661 -1.0169 23 1 -0.3633 -0.0005 -1.0277 24 1 -0.3634 -0.8898 0.5142 25 1 -0.3634 0.8902 0.5133 26 1 5.5409 1.1727 -0.6254 27 1 4.4664 2.5732 -0.3967 28 1 4.4886 2.1904 2.0531 29 1 5.5631 0.7898 1.8244 30 1 7.1277 2.6743 4.5749 31 1 1.0699 -2.6458 0.7040 32 1 1.5781 -2.7933 -0.9985 33 1 3.3030 -3.1710 1.4896 34 1 2.8618 -4.4053 0.2866 35 1 5.1181 -3.6924 -0.2172 36 1 4.0556 -2.9850 -1.4581 37 1 6.3532 -0.2102 -0.6007 38 1 6.5325 -1.8624 -1.2384 39 1 5.3135 -0.7673 -1.9337 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259856627.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:33 Heat of formation + Delta-G solvation = 31.101280 kcal Electronic energy + Delta-G solvation = -18544.279797 eV Core-core repulsion = 15872.637103 eV Total energy + Delta-G solvation = -2671.642694 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.00186 -36.79441 -34.96508 -33.00555 -31.11282 -30.68358 -30.14527 -26.60317 -26.33224 -24.31760 -22.56668 -21.75455 -20.32998 -19.47342 -18.59460 -16.31964 -15.87787 -15.73428 -14.79789 -14.39737 -14.20837 -13.95739 -13.61217 -13.32933 -12.96019 -12.67843 -12.44432 -12.32745 -11.98861 -11.91348 -11.64376 -11.34700 -11.02494 -10.86922 -10.83082 -10.65485 -10.55704 -10.49128 -9.67478 -9.55475 -9.19043 -8.96689 -8.81673 -8.22334 -7.44249 -5.88559 -3.90637 2.48854 3.08842 3.40396 3.44259 3.47042 3.69814 4.47038 4.55061 4.60370 4.68420 4.79648 4.99834 5.15471 5.22333 5.28448 5.46740 5.52304 5.57998 5.59881 5.73150 5.77393 5.80434 5.86486 5.95207 6.03644 6.17696 6.26205 6.45001 6.59933 6.78891 6.90704 6.97630 7.14881 7.49033 7.69536 7.83556 8.01317 8.15313 8.54844 8.70978 9.16929 9.72370 11.22679 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.026583 B = 0.006031 C = 0.005414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.059336 B = 4641.701642 C = 5170.338881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.189 3.811 3 N -0.488 5.488 4 C 0.040 3.960 5 C -0.042 4.042 6 C 0.035 3.965 7 C -0.517 4.517 8 H 0.055 0.945 9 C 0.057 3.943 10 N -0.896 5.896 11 Si 0.890 3.110 12 H -0.277 1.277 13 H -0.288 1.288 14 H -0.277 1.277 15 C -0.030 4.030 16 N -0.459 5.459 17 C 0.108 3.892 18 C -0.134 4.134 19 C -0.119 4.119 20 C -0.011 4.011 21 H 0.088 0.912 22 C -0.148 4.148 23 H 0.073 0.927 24 H 0.065 0.935 25 H 0.086 0.914 26 H 0.070 0.930 27 H 0.058 0.942 28 H 0.015 0.985 29 H 0.014 0.986 30 H 0.259 0.741 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.064 0.936 37 H 0.083 0.917 38 H 0.055 0.945 39 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.240 -13.898 -8.594 18.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.072 4.072 3 N -0.208 5.208 4 C -0.088 4.088 5 C -0.081 4.081 6 C -0.003 4.003 7 C -0.555 4.555 8 H 0.073 0.927 9 C -0.144 4.144 10 N -0.536 5.536 11 Si 0.718 3.282 12 H -0.203 1.203 13 H -0.214 1.214 14 H -0.203 1.203 15 C -0.141 4.141 16 N -0.145 5.145 17 C -0.015 4.015 18 C -0.171 4.171 19 C -0.156 4.156 20 C -0.030 4.030 21 H 0.106 0.894 22 C -0.205 4.205 23 H 0.091 0.909 24 H 0.084 0.916 25 H 0.105 0.895 26 H 0.088 0.912 27 H 0.077 0.923 28 H 0.033 0.967 29 H 0.032 0.968 30 H 0.069 0.931 31 H 0.102 0.898 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.100 0.900 35 H 0.092 0.908 36 H 0.083 0.917 37 H 0.102 0.898 38 H 0.074 0.926 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.562 -13.234 -8.404 18.363 hybrid contribution 0.911 -0.258 0.240 0.977 sum -8.651 -13.492 -8.164 17.987 Atomic orbital electron populations 1.20054 0.85675 1.03399 1.02700 1.22965 0.95227 0.81548 1.07456 1.70374 1.02138 1.27798 1.20496 1.20741 0.92935 0.91264 1.03867 1.20353 0.90363 0.95779 1.01567 1.18986 0.95293 0.96620 0.89395 1.21246 1.12906 1.28195 0.93188 0.92680 1.25008 0.97454 0.96257 0.95673 1.69976 1.40880 1.44652 0.98070 0.86690 0.83149 0.81510 0.76831 1.20260 1.21420 1.20272 1.20733 0.84634 0.94925 1.13827 1.45084 1.06496 1.06395 1.56505 1.21823 0.98485 0.78999 1.02180 1.21866 0.94510 0.99233 1.01518 1.21755 0.97221 0.97000 0.99654 1.19685 0.91302 0.91109 1.00933 0.89363 1.21950 0.98043 1.02173 0.98372 0.90865 0.91588 0.89471 0.91218 0.92295 0.96655 0.96799 0.93119 0.89809 0.90508 0.90672 0.90025 0.90848 0.91745 0.89831 0.92624 0.92843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.70 10.24 36.01 0.37 -0.34 16 2 C 0.19 3.26 7.94 -155.76 -1.24 2.02 16 3 N -0.49 -10.52 11.27 -7.27 -0.08 -10.60 16 4 C 0.04 0.87 6.25 -83.00 -0.52 0.35 16 5 C -0.04 -0.99 5.26 -27.88 -0.15 -1.13 16 6 C 0.03 0.96 4.96 -27.88 -0.14 0.82 16 7 C -0.52 -15.12 9.11 -34.44 -0.31 -15.44 16 8 H 0.05 1.55 7.74 -52.48 -0.41 1.14 16 9 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 10 N -0.90 -27.82 13.29 55.43 0.74 -27.08 16 11 Si 0.89 22.17 29.54 -169.99 -5.02 17.15 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 14 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 15 C -0.03 -0.55 6.02 -81.73 -0.49 -1.04 16 16 N -0.46 -7.29 3.13 -109.43 -0.34 -7.63 16 17 C 0.11 1.16 6.68 -3.91 -0.03 1.13 16 18 C -0.13 -1.34 5.92 -26.52 -0.16 -1.50 16 19 C -0.12 -1.35 5.23 -26.41 -0.14 -1.48 16 20 C -0.01 -0.17 3.04 -91.50 -0.28 -0.44 16 21 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 22 C -0.15 -2.21 8.10 37.16 0.30 -1.91 16 23 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 24 H 0.07 0.61 7.59 -51.93 -0.39 0.21 16 25 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 26 H 0.07 1.49 4.80 -51.93 -0.25 1.24 16 27 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 28 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 31 H 0.08 0.74 7.72 -51.93 -0.40 0.34 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.85 8.11 -51.93 -0.42 0.43 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.71 8.08 -51.93 -0.42 0.29 16 37 H 0.08 1.45 5.86 -51.93 -0.30 1.14 16 38 H 0.05 0.69 8.06 -51.93 -0.42 0.27 16 39 H 0.05 0.79 8.03 -51.93 -0.42 0.37 16 LS Contribution 310.31 15.07 4.68 4.68 Total: -1.00 -34.57 310.31 -9.28 -43.85 By element: Atomic # 1 Polarization: 3.38 SS G_CDS: -6.37 Total: -2.99 kcal Atomic # 6 Polarization: -14.50 SS G_CDS: -2.87 Total: -17.37 kcal Atomic # 7 Polarization: -45.63 SS G_CDS: 0.31 Total: -45.31 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -34.57 -9.28 -43.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259856627.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.948 kcal (2) G-P(sol) polarization free energy of solvation -34.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds