Wall clock time and date at job start Mon Mar 30 2020 05:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30781 * 125.72115 * 2 1 4 4 C 1.34430 * 109.32343 * 180.02562 * 3 2 1 5 5 C 1.50689 * 126.10466 * 179.97438 * 4 3 2 6 6 C 1.53007 * 109.47248 * 97.37350 * 5 4 3 7 7 C 1.50703 * 109.47221 * 180.02562 * 6 5 4 8 8 H 1.08005 * 119.99583 * 359.97438 * 7 6 5 9 9 C 1.37871 * 120.00057 * 179.97438 * 7 6 5 10 10 N 1.31519 * 119.99997 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 120.00074 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.46854 * 59.99872 * 11 9 7 13 13 H 1.48501 * 109.46771 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.46708 * 300.00030 * 11 9 7 15 15 C 1.33865 * 107.79135 * 359.97438 * 4 3 2 16 16 N 1.34405 * 125.72458 * 179.97438 * 2 1 3 17 17 C 1.46469 * 128.44009 * 359.88896 * 16 2 1 18 18 C 1.53291 * 108.69076 * 197.32991 * 17 16 2 19 19 C 1.53121 * 109.70271 * 309.23130 * 18 17 16 20 20 C 1.50712 * 128.67872 * 179.87644 * 15 4 3 21 21 H 1.08998 * 109.74975 * 76.13954 * 20 15 4 22 22 C 1.53007 * 109.74339 * 315.42580 * 20 15 4 23 23 H 1.08999 * 109.46918 * 90.02896 * 1 2 3 24 24 H 1.09001 * 109.47227 * 210.02480 * 1 2 3 25 25 H 1.08998 * 109.47331 * 330.03111 * 1 2 3 26 26 H 1.09003 * 109.47275 * 217.37073 * 5 4 3 27 27 H 1.09000 * 109.47222 * 337.37278 * 5 4 3 28 28 H 1.09006 * 109.46751 * 299.99513 * 6 5 4 29 29 H 1.08991 * 109.47286 * 59.99947 * 6 5 4 30 30 H 0.96993 * 119.99827 * 179.97438 * 10 9 7 31 31 H 1.09000 * 109.60426 * 317.09057 * 17 16 2 32 32 H 1.09003 * 109.60145 * 77.56905 * 17 16 2 33 33 H 1.08995 * 109.42915 * 69.29769 * 18 17 16 34 34 H 1.08995 * 109.43179 * 189.16164 * 18 17 16 35 35 H 1.08996 * 109.49703 * 189.86552 * 19 18 17 36 36 H 1.09002 * 109.49569 * 309.93016 * 19 18 17 37 37 H 1.09002 * 109.46899 * 76.89707 * 22 20 15 38 38 H 1.08999 * 109.47343 * 196.90469 * 22 20 15 39 39 H 1.09001 * 109.46993 * 316.90608 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2706 1.0618 0.0000 4 6 3.5602 0.6823 -0.0006 5 6 4.7557 1.5996 -0.0013 6 6 5.2738 1.7634 1.4290 7 6 6.4690 2.6813 1.4284 8 1 6.8239 3.1050 0.5005 9 6 7.1094 2.9800 2.6122 10 7 6.6769 2.4644 3.7422 11 14 8.5906 4.1184 2.6115 12 1 8.1953 5.4446 2.0727 13 1 9.0926 4.2782 3.9999 14 1 9.6607 3.5376 1.7613 15 6 3.5927 -0.6560 -0.0004 16 7 2.2918 -1.0911 0.0005 17 6 1.8921 -2.5003 0.0033 18 6 3.0923 -3.3504 0.4353 19 6 4.3189 -2.9743 -0.4005 20 6 4.7918 -1.5690 -0.0033 21 1 5.2364 -1.5963 0.9915 22 6 5.8219 -1.0661 -1.0169 23 1 -0.3633 -0.0005 -1.0277 24 1 -0.3634 -0.8898 0.5142 25 1 -0.3634 0.8902 0.5133 26 1 5.5409 1.1727 -0.6254 27 1 4.4664 2.5732 -0.3967 28 1 4.4886 2.1904 2.0531 29 1 5.5631 0.7898 1.8244 30 1 7.1277 2.6743 4.5749 31 1 1.0699 -2.6458 0.7040 32 1 1.5781 -2.7933 -0.9985 33 1 3.3030 -3.1710 1.4896 34 1 2.8618 -4.4053 0.2866 35 1 5.1181 -3.6924 -0.2172 36 1 4.0556 -2.9850 -1.4581 37 1 6.3532 -0.2102 -0.6007 38 1 6.5325 -1.8624 -1.2384 39 1 5.3135 -0.7673 -1.9337 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259856627.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:33 Heat of formation + Delta-G solvation = 10.128105 kcal Electronic energy + Delta-G solvation = -18545.189262 eV Core-core repulsion = 15872.637103 eV Total energy + Delta-G solvation = -2672.552159 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.33056 -37.87436 -36.59211 -34.94741 -32.76215 -31.91780 -31.46623 -28.23326 -27.60264 -25.93308 -23.79034 -23.37799 -21.79029 -20.88561 -19.80175 -18.50870 -17.18513 -16.95788 -16.47486 -16.04256 -15.35577 -15.16888 -14.65776 -14.62868 -14.34786 -14.13023 -13.90442 -13.81913 -13.48780 -13.23611 -12.86070 -12.76307 -12.65339 -12.52565 -12.34602 -11.98309 -11.93992 -11.70362 -11.59185 -11.35941 -11.22244 -10.70420 -10.52198 -10.22346 -8.91536 -8.17881 -6.30836 1.15492 1.39680 1.44640 1.52246 1.95309 2.17990 2.43112 3.13912 3.56048 3.61460 3.69163 3.77744 3.93890 4.18653 4.31383 4.33930 4.46552 4.50942 4.58091 4.65812 4.70765 4.76479 4.82889 4.86182 4.96938 4.99096 5.05427 5.10400 5.13918 5.26055 5.32188 5.38475 5.47950 5.57858 5.74491 5.84453 5.92643 6.24914 6.49431 6.85167 7.28532 7.38213 8.93944 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.026583 B = 0.006031 C = 0.005414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.059336 B = 4641.701642 C = 5170.338881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.191 3.809 3 N -0.544 5.544 4 C -0.012 4.012 5 C -0.026 4.026 6 C 0.052 3.948 7 C -0.542 4.542 8 H 0.063 0.937 9 C -0.001 4.001 10 N -0.936 5.936 11 Si 0.970 3.030 12 H -0.269 1.269 13 H -0.282 1.282 14 H -0.260 1.260 15 C -0.023 4.023 16 N -0.455 5.455 17 C 0.096 3.904 18 C -0.131 4.131 19 C -0.111 4.111 20 C -0.017 4.017 21 H 0.063 0.937 22 C -0.142 4.142 23 H 0.096 0.904 24 H 0.099 0.901 25 H 0.081 0.919 26 H 0.085 0.915 27 H 0.040 0.960 28 H -0.032 1.032 29 H -0.009 1.009 30 H 0.263 0.737 31 H 0.109 0.891 32 H 0.106 0.894 33 H 0.056 0.944 34 H 0.124 0.876 35 H 0.094 0.906 36 H 0.076 0.924 37 H 0.049 0.951 38 H 0.085 0.915 39 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.637 -16.159 -9.831 21.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.072 4.072 3 N -0.266 5.266 4 C -0.139 4.139 5 C -0.064 4.064 6 C 0.015 3.985 7 C -0.580 4.580 8 H 0.081 0.919 9 C -0.198 4.198 10 N -0.576 5.576 11 Si 0.793 3.207 12 H -0.194 1.194 13 H -0.207 1.207 14 H -0.185 1.185 15 C -0.137 4.137 16 N -0.139 5.139 17 C -0.024 4.024 18 C -0.169 4.169 19 C -0.149 4.149 20 C -0.037 4.037 21 H 0.081 0.919 22 C -0.199 4.199 23 H 0.114 0.886 24 H 0.118 0.882 25 H 0.100 0.900 26 H 0.103 0.897 27 H 0.059 0.941 28 H -0.014 1.014 29 H 0.010 0.990 30 H 0.072 0.928 31 H 0.127 0.873 32 H 0.124 0.876 33 H 0.074 0.926 34 H 0.142 0.858 35 H 0.113 0.887 36 H 0.094 0.906 37 H 0.068 0.932 38 H 0.104 0.896 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.974 -15.526 -9.656 20.827 hybrid contribution 0.947 0.392 0.651 1.214 sum -9.027 -15.135 -9.005 19.790 Atomic orbital electron populations 1.20276 0.81800 1.04794 1.04612 1.23900 0.97187 0.81043 1.05028 1.70244 1.02574 1.30727 1.23014 1.20546 0.92745 0.92683 1.07971 1.20022 0.92091 0.95800 0.98533 1.18726 0.93697 0.94729 0.91393 1.21645 1.13607 1.28835 0.93914 0.91903 1.26040 1.00937 0.97879 0.94961 1.70132 1.42548 1.46029 0.98890 0.85441 0.78851 0.79034 0.77356 1.19383 1.20690 1.18496 1.21011 0.86792 0.94236 1.11648 1.45404 1.05178 1.08433 1.54931 1.22354 0.99580 0.75742 1.04722 1.21920 0.93525 1.01452 0.99990 1.21735 0.98602 0.94064 1.00466 1.19806 0.90350 0.93665 0.99856 0.91918 1.21867 0.98276 1.01879 0.97914 0.88551 0.88198 0.90030 0.89704 0.94127 1.01398 0.99036 0.92798 0.87287 0.87614 0.92552 0.85826 0.88750 0.90560 0.93230 0.89582 0.92734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.20 10.24 71.24 0.73 -0.47 16 2 C 0.19 6.48 7.94 138.25 1.10 7.57 16 3 N -0.54 -24.51 11.27 -176.92 -1.99 -26.50 16 4 C -0.01 -0.57 6.25 41.16 0.26 -0.31 16 5 C -0.03 -1.32 5.26 29.85 0.16 -1.16 16 6 C 0.05 3.11 4.96 29.85 0.15 3.26 16 7 C -0.54 -33.16 9.11 25.60 0.23 -32.92 16 8 H 0.06 3.65 7.74 -2.91 -0.02 3.63 16 9 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 10 N -0.94 -60.20 13.29 21.45 0.28 -59.92 16 11 Si 0.97 46.17 29.54 68.60 2.03 48.19 16 12 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 13 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 14 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 15 C -0.02 -0.86 6.02 40.73 0.25 -0.61 16 16 N -0.46 -13.84 3.13 -500.12 -1.57 -15.40 16 17 C 0.10 1.69 6.68 86.48 0.58 2.27 16 18 C -0.13 -2.16 5.92 30.73 0.18 -1.97 16 19 C -0.11 -2.20 5.23 30.80 0.16 -2.04 16 20 C -0.02 -0.53 3.04 -11.37 -0.03 -0.56 16 21 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 22 C -0.14 -4.25 8.10 71.98 0.58 -3.67 16 23 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 24 H 0.10 1.43 7.59 -2.39 -0.02 1.42 16 25 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 26 H 0.08 3.89 4.80 -2.39 -0.01 3.88 16 27 H 0.04 2.10 8.14 -2.39 -0.02 2.08 16 28 H -0.03 -2.20 8.14 -2.38 -0.02 -2.22 16 29 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 30 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 31 H 0.11 1.42 7.72 -2.39 -0.02 1.40 16 32 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.06 1.16 8.11 -2.39 -0.02 1.14 16 34 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.08 1.37 8.08 -2.39 -0.02 1.35 16 37 H 0.05 1.80 5.86 -2.39 -0.01 1.79 16 38 H 0.09 2.00 8.06 -2.39 -0.02 1.98 16 39 H 0.05 1.59 8.03 -2.39 -0.02 1.58 16 Total: -1.00 -81.34 310.31 4.56 -76.78 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: 1.01 Total: 7.06 kcal Atomic # 6 Polarization: -35.01 SS G_CDS: 4.80 Total: -30.21 kcal Atomic # 7 Polarization: -98.55 SS G_CDS: -3.28 Total: -101.82 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.19 kcal Total: -81.34 4.56 -76.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259856627.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.904 kcal (2) G-P(sol) polarization free energy of solvation -81.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds