Wall clock time and date at job start Mon Mar 30 2020 06:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50698 * 109.46853 * 2 1 4 4 N 1.30789 * 125.72190 * 89.98075 * 3 2 1 5 5 C 1.34429 * 109.31800 * 180.02562 * 4 3 2 6 6 C 1.50705 * 126.09912 * 179.97438 * 5 4 3 7 7 C 1.33855 * 107.79962 * 0.02562 * 5 4 3 8 8 N 1.34406 * 125.72642 * 269.96947 * 3 2 1 9 9 C 1.46473 * 128.44127 * 359.82211 * 8 3 2 10 10 C 1.53286 * 108.69343 * 197.37435 * 9 8 3 11 11 H 1.09002 * 109.43303 * 69.25487 * 10 9 8 12 12 C 1.53004 * 109.43021 * 189.15390 * 10 9 8 13 13 C 1.50700 * 109.47167 * 184.99714 * 12 10 9 14 14 H 1.08002 * 119.99679 * 0.02562 * 13 12 10 15 15 C 1.37876 * 120.00203 * 180.02562 * 13 12 10 16 16 N 1.31514 * 119.99593 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 120.00046 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47214 * 60.00035 * 17 15 13 19 19 H 1.48500 * 109.47061 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47261 * 299.99918 * 17 15 13 21 21 C 1.53113 * 109.70843 * 309.23040 * 10 9 8 22 22 C 1.50714 * 128.68274 * 179.97438 * 7 5 4 23 23 H 1.08994 * 109.47081 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47151 * 300.00035 * 1 2 3 25 25 H 1.09003 * 109.46999 * 59.99875 * 1 2 3 26 26 H 1.08996 * 109.47460 * 239.99974 * 2 1 3 27 27 H 1.09003 * 109.46999 * 120.00124 * 2 1 3 28 28 H 1.09004 * 109.46961 * 270.02486 * 6 5 4 29 29 H 1.08997 * 109.47378 * 30.02610 * 6 5 4 30 30 H 1.08996 * 109.46795 * 150.02913 * 6 5 4 31 31 H 1.08997 * 109.60234 * 77.61240 * 9 8 3 32 32 H 1.09002 * 109.59688 * 317.13457 * 9 8 3 33 33 H 1.08992 * 109.47265 * 305.00303 * 12 10 9 34 34 H 1.09004 * 109.46637 * 65.00216 * 12 10 9 35 35 H 0.96998 * 119.99799 * 180.02562 * 16 15 13 36 36 H 1.08996 * 109.49726 * 189.85693 * 21 10 9 37 37 H 1.09007 * 109.49717 * 309.92082 * 21 10 9 38 38 H 1.08997 * 109.74875 * 76.08341 * 22 7 5 39 39 H 1.09001 * 109.74521 * 315.35967 * 22 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2864 2.1409 1.0618 5 6 2.7158 3.3569 0.6822 6 6 3.1133 4.4845 1.5996 7 6 2.7262 3.3878 -0.6560 8 7 2.2944 2.1606 -1.0911 9 6 2.1653 1.7824 -2.5003 10 6 2.9731 2.7698 -3.3500 11 1 4.0372 2.6179 -3.1690 12 6 2.6699 2.5336 -4.8310 13 6 3.5534 3.4186 -5.6720 14 1 4.2607 4.0828 -5.1976 15 6 3.4587 3.3805 -7.0470 16 7 2.5970 2.5720 -7.6245 17 14 4.5543 4.4769 -8.0894 18 1 5.9783 4.1546 -7.8188 19 1 4.2599 4.2478 -9.5268 20 1 4.2959 5.8997 -7.7514 21 6 2.5934 4.2049 -2.9748 22 6 3.1248 4.5187 -1.5690 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 2.2400 5.0982 1.8206 29 1 3.5135 4.0747 2.5269 30 1 3.8740 5.0964 1.1146 31 1 1.1164 1.8199 -2.7943 32 1 2.5522 0.7737 -2.6450 33 1 2.8602 1.4894 -5.0788 34 1 1.6245 2.7696 -5.0298 35 1 2.5307 2.5449 -8.5918 36 1 3.0333 4.8971 -3.6927 37 1 1.5084 4.3091 -2.9867 38 1 4.2110 4.6048 -1.5962 39 1 2.6897 5.4518 -1.2111 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259858976.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:17 Heat of formation + Delta-G solvation = 20.352816 kcal Electronic energy + Delta-G solvation = -18334.558903 eV Core-core repulsion = 15662.450120 eV Total energy + Delta-G solvation = -2672.108783 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.09426 -36.88270 -34.37238 -33.18220 -32.22596 -30.81895 -29.64773 -27.10029 -25.77348 -23.84419 -23.53527 -21.81333 -20.25930 -19.50420 -18.44722 -16.59438 -15.97434 -15.49605 -14.59708 -14.44525 -14.15478 -13.96493 -13.84812 -13.19223 -12.90004 -12.75215 -12.62594 -12.42341 -12.13614 -11.99612 -11.59024 -11.53072 -11.26134 -11.05918 -10.92499 -10.84753 -10.48123 -10.37639 -9.93632 -9.60480 -9.42084 -9.19780 -9.00805 -8.46456 -7.74412 -6.11361 -4.14092 2.37615 3.16656 3.26572 3.31846 3.32464 3.33916 4.36489 4.51953 4.91977 5.02625 5.14078 5.20224 5.25974 5.30793 5.36933 5.38104 5.59147 5.61470 5.69894 5.78729 5.80708 5.84412 5.88186 5.95404 6.07845 6.17202 6.24246 6.26895 6.33979 6.66898 6.77428 6.84465 6.86723 7.13222 7.47203 7.58293 7.59649 7.85590 8.26683 8.42008 8.90670 9.50485 10.99918 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.028669 B = 0.005619 C = 0.004836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.420493 B = 4981.856754 C = 5788.501021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.035 4.035 3 C 0.200 3.800 4 N -0.496 5.496 5 C -0.014 4.014 6 C -0.059 4.059 7 C -0.010 4.010 8 N -0.442 5.442 9 C 0.104 3.896 10 C -0.091 4.091 11 H 0.067 0.933 12 C 0.031 3.969 13 C -0.520 4.520 14 H 0.058 0.942 15 C 0.059 3.941 16 N -0.894 5.894 17 Si 0.892 3.108 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.276 1.276 21 C -0.111 4.111 22 C -0.048 4.048 23 H 0.062 0.938 24 H 0.060 0.940 25 H 0.053 0.947 26 H 0.076 0.924 27 H 0.090 0.910 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.019 0.981 34 H 0.020 0.980 35 H 0.262 0.738 36 H 0.089 0.911 37 H 0.056 0.944 38 H 0.076 0.924 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.763 -0.725 12.980 13.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.074 4.074 3 C -0.062 4.062 4 N -0.217 5.217 5 C -0.143 4.143 6 C -0.117 4.117 7 C -0.126 4.126 8 N -0.124 5.124 9 C -0.017 4.017 10 C -0.110 4.110 11 H 0.086 0.914 12 C -0.006 4.006 13 C -0.558 4.558 14 H 0.076 0.924 15 C -0.143 4.143 16 N -0.533 5.533 17 Si 0.720 3.280 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.148 4.148 22 C -0.087 4.087 23 H 0.081 0.919 24 H 0.079 0.921 25 H 0.072 0.928 26 H 0.095 0.905 27 H 0.108 0.892 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.099 0.901 32 H 0.102 0.898 33 H 0.037 0.963 34 H 0.038 0.962 35 H 0.072 0.928 36 H 0.107 0.893 37 H 0.074 0.926 38 H 0.095 0.905 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.946 -1.117 13.457 13.643 hybrid contribution 0.624 0.709 -1.597 1.855 sum -1.323 -0.407 11.860 11.941 Atomic orbital electron populations 1.21717 0.94223 1.01916 1.02450 1.19883 0.96225 0.87685 1.03617 1.22893 1.05264 0.96499 0.81550 1.70235 1.19348 1.03706 1.28377 1.20162 1.08019 0.94940 0.91172 1.19920 1.00520 0.93774 0.97474 1.20984 1.08175 0.88843 0.94560 1.45370 1.47957 1.11283 1.07746 1.22302 1.02272 1.00603 0.76573 1.21577 0.98586 0.92738 0.98072 0.91448 1.19079 0.97456 0.97426 0.86648 1.21097 1.20783 1.22884 0.91028 0.92430 1.25000 0.95514 0.95620 0.98133 1.69941 1.35569 1.37585 1.10214 0.86651 0.81015 0.81059 0.79271 1.20220 1.21267 1.20155 1.21673 1.00597 0.97920 0.94651 1.20314 1.00943 0.93655 0.93753 0.91852 0.92114 0.92754 0.90519 0.89190 0.92027 0.91736 0.91679 0.90122 0.89776 0.96280 0.96164 0.92822 0.89265 0.92559 0.90521 0.90410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.89 37.16 0.37 -1.23 16 2 C -0.03 -0.44 6.30 -27.88 -0.18 -0.61 16 3 C 0.20 3.27 7.20 -155.75 -1.12 2.15 16 4 N -0.50 -8.83 11.27 -7.27 -0.08 -8.91 16 5 C -0.01 -0.24 7.09 -82.99 -0.59 -0.83 16 6 C -0.06 -0.76 10.27 36.01 0.37 -0.39 16 7 C -0.01 -0.17 6.56 -81.73 -0.54 -0.71 16 8 N -0.44 -7.49 3.13 -109.43 -0.34 -7.83 16 9 C 0.10 1.74 5.97 -3.91 -0.02 1.71 16 10 C -0.09 -1.73 2.13 -90.41 -0.19 -1.93 16 11 H 0.07 1.35 8.11 -51.93 -0.42 0.92 16 12 C 0.03 0.74 4.44 -27.88 -0.12 0.62 16 13 C -0.52 -13.65 8.26 -34.44 -0.28 -13.93 16 14 H 0.06 1.47 7.10 -52.49 -0.37 1.09 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.89 -25.67 13.29 55.43 0.74 -24.93 16 17 Si 0.89 20.80 29.54 -169.99 -5.02 15.78 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 21 C -0.11 -1.96 5.18 -26.40 -0.14 -2.09 16 22 C -0.05 -0.74 6.00 -27.60 -0.17 -0.91 16 23 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.08 0.87 7.59 -51.93 -0.39 0.47 16 27 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.73 8.01 -51.93 -0.42 0.32 16 31 H 0.08 1.31 8.13 -51.93 -0.42 0.89 16 32 H 0.08 1.30 7.72 -51.93 -0.40 0.90 16 33 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.26 7.16 8.31 -40.82 -0.34 6.83 16 36 H 0.09 1.68 6.71 -51.93 -0.35 1.33 16 37 H 0.06 1.00 8.12 -51.93 -0.42 0.58 16 38 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 314.51 15.07 4.74 4.74 Total: -1.00 -30.01 314.51 -9.24 -39.25 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -6.56 Total: -1.44 kcal Atomic # 6 Polarization: -13.94 SS G_CDS: -2.71 Total: -16.65 kcal Atomic # 7 Polarization: -41.99 SS G_CDS: 0.31 Total: -41.67 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.01 -9.24 -39.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259858976.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.600 kcal (2) G-P(sol) polarization free energy of solvation -30.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds