Wall clock time and date at job start Mon Mar 30 2020 06:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50698 * 109.46853 * 2 1 4 4 N 1.30789 * 125.72190 * 89.98075 * 3 2 1 5 5 C 1.34429 * 109.31800 * 180.02562 * 4 3 2 6 6 C 1.50705 * 126.09912 * 179.97438 * 5 4 3 7 7 C 1.33855 * 107.79962 * 0.02562 * 5 4 3 8 8 N 1.34406 * 125.72642 * 269.96947 * 3 2 1 9 9 C 1.46473 * 128.44127 * 359.82211 * 8 3 2 10 10 C 1.53286 * 108.69343 * 197.37435 * 9 8 3 11 11 H 1.09002 * 109.43303 * 69.25487 * 10 9 8 12 12 C 1.53004 * 109.43021 * 189.15390 * 10 9 8 13 13 C 1.50700 * 109.47167 * 184.99714 * 12 10 9 14 14 H 1.08002 * 119.99679 * 0.02562 * 13 12 10 15 15 C 1.37876 * 120.00203 * 180.02562 * 13 12 10 16 16 N 1.31514 * 119.99593 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 120.00046 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47214 * 60.00035 * 17 15 13 19 19 H 1.48500 * 109.47061 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47261 * 299.99918 * 17 15 13 21 21 C 1.53113 * 109.70843 * 309.23040 * 10 9 8 22 22 C 1.50714 * 128.68274 * 179.97438 * 7 5 4 23 23 H 1.08994 * 109.47081 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47151 * 300.00035 * 1 2 3 25 25 H 1.09003 * 109.46999 * 59.99875 * 1 2 3 26 26 H 1.08996 * 109.47460 * 239.99974 * 2 1 3 27 27 H 1.09003 * 109.46999 * 120.00124 * 2 1 3 28 28 H 1.09004 * 109.46961 * 270.02486 * 6 5 4 29 29 H 1.08997 * 109.47378 * 30.02610 * 6 5 4 30 30 H 1.08996 * 109.46795 * 150.02913 * 6 5 4 31 31 H 1.08997 * 109.60234 * 77.61240 * 9 8 3 32 32 H 1.09002 * 109.59688 * 317.13457 * 9 8 3 33 33 H 1.08992 * 109.47265 * 305.00303 * 12 10 9 34 34 H 1.09004 * 109.46637 * 65.00216 * 12 10 9 35 35 H 0.96998 * 119.99799 * 180.02562 * 16 15 13 36 36 H 1.08996 * 109.49726 * 189.85693 * 21 10 9 37 37 H 1.09007 * 109.49717 * 309.92082 * 21 10 9 38 38 H 1.08997 * 109.74875 * 76.08341 * 22 7 5 39 39 H 1.09001 * 109.74521 * 315.35967 * 22 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2864 2.1409 1.0618 5 6 2.7158 3.3569 0.6822 6 6 3.1133 4.4845 1.5996 7 6 2.7262 3.3878 -0.6560 8 7 2.2944 2.1606 -1.0911 9 6 2.1653 1.7824 -2.5003 10 6 2.9731 2.7698 -3.3500 11 1 4.0372 2.6179 -3.1690 12 6 2.6699 2.5336 -4.8310 13 6 3.5534 3.4186 -5.6720 14 1 4.2607 4.0828 -5.1976 15 6 3.4587 3.3805 -7.0470 16 7 2.5970 2.5720 -7.6245 17 14 4.5543 4.4769 -8.0894 18 1 5.9783 4.1546 -7.8188 19 1 4.2599 4.2478 -9.5268 20 1 4.2959 5.8997 -7.7514 21 6 2.5934 4.2049 -2.9748 22 6 3.1248 4.5187 -1.5690 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 2.2400 5.0982 1.8206 29 1 3.5135 4.0747 2.5269 30 1 3.8740 5.0964 1.1146 31 1 1.1164 1.8199 -2.7943 32 1 2.5522 0.7737 -2.6450 33 1 2.8602 1.4894 -5.0788 34 1 1.6245 2.7696 -5.0298 35 1 2.5307 2.5449 -8.5918 36 1 3.0333 4.8971 -3.6927 37 1 1.5084 4.3091 -2.9867 38 1 4.2110 4.6048 -1.5962 39 1 2.6897 5.4518 -1.2111 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259858976.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:17 Heat of formation + Delta-G solvation = 5.240769 kcal Electronic energy + Delta-G solvation = -18335.214211 eV Core-core repulsion = 15662.450120 eV Total energy + Delta-G solvation = -2672.764090 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.35361 -38.37903 -35.47751 -35.05406 -33.47072 -32.38081 -30.80261 -28.82852 -26.95187 -25.30975 -24.99309 -23.18167 -21.64942 -20.82284 -19.83553 -18.52197 -17.26633 -16.88215 -16.45191 -15.63629 -15.44594 -15.18772 -15.13794 -14.46825 -14.27775 -14.11221 -13.95825 -13.83182 -13.49415 -13.12159 -12.99182 -12.82193 -12.64986 -12.52912 -12.39560 -12.24773 -12.00479 -11.91073 -11.58740 -11.22339 -11.11965 -10.82524 -10.54269 -10.32264 -8.97007 -8.19652 -6.28535 1.12289 1.42291 1.43363 1.51027 1.89255 2.08939 2.41674 3.15119 3.44096 3.62682 3.72242 3.80422 4.03325 4.13220 4.27041 4.31046 4.34735 4.40421 4.53526 4.56986 4.70851 4.80217 4.86021 4.91578 4.93281 4.97354 5.05166 5.11461 5.20982 5.24630 5.28106 5.36284 5.47345 5.57205 5.66646 5.81241 5.93159 6.21071 6.36018 6.85447 7.16916 7.40116 8.91965 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.028669 B = 0.005619 C = 0.004836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.420493 B = 4981.856754 C = 5788.501021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.037 4.037 3 C 0.197 3.803 4 N -0.523 5.523 5 C -0.024 4.024 6 C -0.057 4.057 7 C -0.033 4.033 8 N -0.450 5.450 9 C 0.113 3.887 10 C -0.080 4.080 11 H 0.059 0.941 12 C 0.039 3.961 13 C -0.531 4.531 14 H 0.063 0.937 15 C 0.004 3.996 16 N -0.932 5.932 17 Si 0.957 3.043 18 H -0.270 1.270 19 H -0.287 1.287 20 H -0.266 1.266 21 C -0.106 4.106 22 C -0.038 4.038 23 H 0.089 0.911 24 H 0.051 0.949 25 H 0.043 0.957 26 H 0.088 0.912 27 H 0.101 0.899 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.095 0.905 33 H -0.003 1.003 34 H -0.002 1.002 35 H 0.262 0.738 36 H 0.075 0.925 37 H 0.051 0.949 38 H 0.084 0.916 39 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.195 -0.135 13.904 13.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.076 4.076 3 C -0.065 4.065 4 N -0.244 5.244 5 C -0.153 4.153 6 C -0.115 4.115 7 C -0.147 4.147 8 N -0.132 5.132 9 C -0.009 4.009 10 C -0.099 4.099 11 H 0.078 0.922 12 C 0.001 3.999 13 C -0.569 4.569 14 H 0.082 0.918 15 C -0.194 4.194 16 N -0.572 5.572 17 Si 0.783 3.217 18 H -0.195 1.195 19 H -0.213 1.213 20 H -0.191 1.191 21 C -0.143 4.143 22 C -0.075 4.075 23 H 0.108 0.892 24 H 0.070 0.930 25 H 0.062 0.938 26 H 0.106 0.894 27 H 0.119 0.881 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.114 0.886 33 H 0.016 0.984 34 H 0.017 0.983 35 H 0.071 0.929 36 H 0.094 0.906 37 H 0.070 0.930 38 H 0.103 0.897 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -1.370 -0.511 14.402 14.476 hybrid contribution 0.422 0.483 -1.843 1.952 sum -0.948 -0.028 12.559 12.595 Atomic orbital electron populations 1.21671 0.93162 1.03345 1.01467 1.20084 0.97047 0.85733 1.04719 1.23629 1.04214 0.97651 0.81039 1.70278 1.20509 1.04542 1.29055 1.20781 1.07251 0.95475 0.91743 1.20027 1.01501 0.92943 0.97048 1.21300 1.09112 0.89247 0.95088 1.45420 1.48501 1.11680 1.07615 1.22106 1.01914 1.00358 0.76518 1.21323 0.98470 0.94615 0.95496 0.92228 1.18913 0.95706 0.95636 0.89644 1.21519 1.20835 1.22911 0.91607 0.91841 1.25858 0.96899 0.97026 0.99627 1.70068 1.37357 1.39358 1.10442 0.85611 0.79285 0.79510 0.77336 1.19462 1.21258 1.19127 1.21568 1.00276 0.96435 0.96059 1.20274 1.01428 0.94217 0.91629 0.89238 0.92963 0.93792 0.89382 0.88072 0.90855 0.91435 0.89974 0.89963 0.88634 0.98433 0.98319 0.92873 0.90590 0.93015 0.89739 0.88096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 9.89 71.98 0.71 -2.12 16 2 C -0.04 -0.86 6.30 29.85 0.19 -0.67 16 3 C 0.20 6.20 7.20 138.25 0.99 7.19 16 4 N -0.52 -17.97 11.27 -176.91 -1.99 -19.96 16 5 C -0.02 -0.78 7.09 41.17 0.29 -0.49 16 6 C -0.06 -1.35 10.27 71.24 0.73 -0.62 16 7 C -0.03 -1.07 6.56 40.73 0.27 -0.80 16 8 N -0.45 -14.80 3.13 -500.12 -1.57 -16.37 16 9 C 0.11 3.71 5.97 86.48 0.52 4.23 16 10 C -0.08 -3.05 2.13 -10.66 -0.02 -3.08 16 11 H 0.06 2.36 8.11 -2.39 -0.02 2.34 16 12 C 0.04 1.87 4.44 29.85 0.13 2.00 16 13 C -0.53 -28.03 8.26 25.60 0.21 -27.82 16 14 H 0.06 3.21 7.10 -2.91 -0.02 3.19 16 15 C 0.00 0.21 5.46 84.65 0.46 0.68 16 16 N -0.93 -54.31 13.29 21.45 0.28 -54.03 16 17 Si 0.96 42.49 29.54 68.60 2.03 44.52 16 18 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 19 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 20 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 21 C -0.11 -3.67 5.18 30.81 0.16 -3.51 16 22 C -0.04 -1.08 6.00 30.03 0.18 -0.90 16 23 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 24 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.09 1.83 7.59 -2.39 -0.02 1.81 16 27 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 28 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.08 1.63 8.01 -2.39 -0.02 1.61 16 31 H 0.08 2.67 8.13 -2.39 -0.02 2.65 16 32 H 0.10 2.89 7.72 -2.39 -0.02 2.87 16 33 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 34 H 0.00 -0.08 8.14 -2.38 -0.02 -0.10 16 35 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 36 H 0.08 2.83 6.71 -2.39 -0.02 2.81 16 37 H 0.05 1.82 8.12 -2.38 -0.02 1.80 16 38 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 39 H 0.10 2.44 8.14 -2.39 -0.02 2.43 16 Total: -1.00 -63.89 314.51 4.58 -59.31 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: 1.01 Total: 12.46 kcal Atomic # 6 Polarization: -30.75 SS G_CDS: 4.83 Total: -25.92 kcal Atomic # 7 Polarization: -87.08 SS G_CDS: -3.28 Total: -90.36 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Total: -63.89 4.58 -59.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259858976.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.549 kcal (2) G-P(sol) polarization free energy of solvation -63.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds