Wall clock time and date at job start Mon Mar 30 2020 06:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50699 * 109.47083 * 240.00115 * 2 1 3 5 5 C 1.39282 * 126.40594 * 60.02397 * 4 2 1 6 6 C 1.41593 * 126.55669 * 359.97438 * 5 4 2 7 7 H 1.08007 * 120.00058 * 0.02562 * 6 5 4 8 8 C 1.39694 * 120.00026 * 180.02562 * 6 5 4 9 9 N 1.31024 * 119.99937 * 359.97438 * 8 6 5 10 10 Si 1.86807 * 119.99954 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46819 * 60.00240 * 10 8 6 12 12 H 1.48503 * 109.46893 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47117 * 299.99951 * 10 8 6 14 14 C 1.41878 * 106.88643 * 179.97438 * 5 4 2 15 15 N 1.30318 * 108.04643 * 359.97438 * 14 5 4 16 16 N 1.34504 * 126.40674 * 239.70645 * 4 2 1 17 17 C 1.46501 * 125.67508 * 0.02659 * 16 4 2 18 18 C 1.54262 * 110.03179 * 237.16205 * 17 16 4 19 19 C 1.54883 * 104.19717 * 217.10619 * 18 17 16 20 20 C 1.54896 * 102.75094 * 37.94375 * 19 18 17 21 21 C 1.53879 * 110.03137 * 119.99812 * 17 16 4 22 22 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 24 24 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 25 25 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 26 26 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 27 27 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 28 28 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 29 29 H 0.97001 * 119.99624 * 179.97438 * 9 8 6 30 30 H 1.08001 * 125.97829 * 179.97438 * 14 5 4 31 31 H 1.08996 * 110.01314 * 358.60588 * 17 16 4 32 32 H 1.08999 * 110.48675 * 335.78364 * 18 17 16 33 33 H 1.09000 * 110.48609 * 98.42795 * 18 17 16 34 34 H 1.09003 * 110.75765 * 279.62825 * 19 18 17 35 35 H 1.08998 * 110.91876 * 156.32823 * 19 18 17 36 36 H 1.08998 * 110.48820 * 203.38218 * 20 19 18 37 37 H 1.08994 * 110.59622 * 80.78927 * 20 19 18 38 38 H 1.09005 * 110.02824 * 238.56952 * 21 17 16 39 39 H 1.09004 * 110.03117 * 359.94539 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.7798 -0.3524 -2.5526 6 6 1.0034 0.7457 -2.9955 7 1 0.5384 1.4034 -2.2759 8 6 0.8388 0.9784 -4.3630 9 7 1.4033 0.1808 -5.2359 10 14 -0.1862 2.4268 -4.9473 11 1 0.4056 3.6897 -4.4371 12 1 -0.2042 2.4535 -6.4319 13 1 -1.5740 2.2889 -4.4372 14 6 2.4493 -1.2986 -3.3708 15 7 3.0526 -2.1511 -2.5913 16 7 2.8132 -1.8052 -1.2573 17 6 3.3255 -2.5182 -0.0845 18 6 4.8660 -2.5811 -0.1355 19 6 5.2080 -3.9811 0.4318 20 6 4.0799 -4.8700 -0.1483 21 6 2.8257 -3.9736 -0.0926 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 1.8934 -0.5139 0.8900 26 1 1.6766 1.9563 -0.8900 27 1 1.6767 1.9564 0.8899 28 1 3.1299 1.4426 -0.0005 29 1 1.2886 0.3423 -6.1855 30 1 2.4577 -1.3103 -4.4507 31 1 3.0015 -2.0172 0.8276 32 1 5.2177 -2.4896 -1.1631 33 1 5.3005 -1.8000 0.4884 34 1 5.1737 -3.9753 1.5213 35 1 6.1835 -4.3161 0.0793 36 1 3.9408 -5.7593 0.4664 37 1 4.3034 -5.1499 -1.1777 38 1 2.2598 -4.1790 0.8161 39 1 2.2012 -4.1490 -0.9687 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259872323.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:13 Heat of formation + Delta-G solvation = 45.868691 kcal Electronic energy + Delta-G solvation = -18814.621352 eV Core-core repulsion = 16143.619020 eV Total energy + Delta-G solvation = -2671.002331 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.64052 -37.25817 -34.44988 -33.34019 -30.76187 -28.43793 -28.18832 -26.84846 -26.33817 -24.45866 -21.26984 -20.87844 -20.40829 -18.89099 -17.82221 -16.75433 -15.83555 -14.91533 -14.68312 -14.41964 -13.51145 -13.39526 -13.04295 -12.86151 -12.76003 -12.11757 -11.77543 -11.45634 -11.41015 -11.12775 -10.99515 -10.90789 -10.86397 -10.85255 -10.76864 -10.66856 -10.41313 -10.33429 -10.25598 -9.95342 -9.39716 -9.13651 -8.60290 -7.56650 -6.98493 -6.35429 -3.87888 3.09663 3.22473 3.25054 3.48374 3.94628 4.18388 4.48992 4.85340 4.91132 5.13272 5.51806 5.62707 5.67409 5.71721 5.73257 5.79794 5.81122 5.84909 6.06091 6.09151 6.09910 6.23689 6.31791 6.32408 6.48722 6.54651 6.59839 6.63343 6.69713 6.76351 6.99370 7.04278 7.08889 7.47411 7.76497 7.79691 8.25810 8.65895 8.77227 9.17690 9.26033 9.64858 10.64023 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.028902 B = 0.007046 C = 0.006175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.574798 B = 3972.804347 C = 4533.469572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.007 3.993 3 C -0.141 4.141 4 C -0.085 4.085 5 C -0.010 4.010 6 C -0.431 4.431 7 H 0.073 0.927 8 C 0.065 3.935 9 N -0.843 5.843 10 Si 0.908 3.092 11 H -0.271 1.271 12 H -0.283 1.283 13 H -0.271 1.271 14 C 0.024 3.976 15 N -0.336 5.336 16 N -0.382 5.382 17 C 0.173 3.827 18 C -0.131 4.131 19 C -0.121 4.121 20 C -0.118 4.118 21 C -0.131 4.131 22 H 0.043 0.957 23 H 0.038 0.962 24 H 0.075 0.925 25 H 0.046 0.954 26 H 0.075 0.925 27 H 0.038 0.962 28 H 0.043 0.957 29 H 0.272 0.728 30 H 0.200 0.800 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.059 0.941 37 H 0.068 0.932 38 H 0.061 0.939 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.434 -3.407 9.260 10.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.013 4.013 3 C -0.199 4.199 4 C -0.206 4.206 5 C -0.020 4.020 6 C -0.465 4.465 7 H 0.091 0.909 8 C -0.145 4.145 9 N -0.475 5.475 10 Si 0.734 3.266 11 H -0.196 1.196 12 H -0.208 1.208 13 H -0.196 1.196 14 C -0.162 4.162 15 N -0.158 5.158 16 N -0.170 5.170 17 C 0.068 3.932 18 C -0.169 4.169 19 C -0.159 4.159 20 C -0.156 4.156 21 C -0.170 4.170 22 H 0.062 0.938 23 H 0.057 0.943 24 H 0.094 0.906 25 H 0.064 0.936 26 H 0.094 0.906 27 H 0.057 0.943 28 H 0.062 0.938 29 H 0.082 0.918 30 H 0.216 0.784 31 H 0.103 0.897 32 H 0.100 0.900 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.190 -4.481 9.146 10.673 hybrid contribution -1.009 1.404 -0.357 1.765 sum 2.181 -3.078 8.789 9.565 Atomic orbital electron populations 1.21836 0.95461 1.01049 1.01532 1.19079 0.94885 0.94569 0.92807 1.21839 1.00204 0.96319 1.01539 1.20675 1.08295 0.95969 0.95689 1.17849 0.99287 0.96737 0.88121 1.18779 1.27353 1.09310 0.91081 0.90903 1.25622 0.95277 0.96775 0.96819 1.69460 1.39626 1.35967 1.02478 0.86384 0.80601 0.81971 0.77626 1.19634 1.20845 1.19628 1.25039 0.97253 0.93246 1.00670 1.76517 1.26572 1.26037 0.86625 1.47441 1.42657 1.23240 1.03623 1.21393 0.93374 0.92053 0.86383 1.22732 0.95117 0.96512 1.02537 1.22440 0.98460 0.95366 0.99665 1.22282 0.94815 0.97352 1.01151 1.22508 0.98017 0.94242 1.02187 0.93799 0.94279 0.90626 0.93561 0.90627 0.94273 0.93804 0.91753 0.78435 0.89737 0.89956 0.92005 0.91860 0.91727 0.92224 0.91333 0.92069 0.90549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 9.04 37.16 0.34 -2.28 16 2 C 0.01 0.14 3.04 -91.77 -0.28 -0.14 16 3 C -0.14 -2.61 9.04 37.16 0.34 -2.28 16 4 C -0.08 -1.99 5.75 -81.03 -0.47 -2.46 16 5 C -0.01 -0.27 5.79 -106.84 -0.62 -0.89 16 6 C -0.43 -11.33 7.69 -37.76 -0.29 -11.62 16 7 H 0.07 1.82 4.71 -52.48 -0.25 1.58 16 8 C 0.06 1.67 5.49 -17.35 -0.10 1.58 16 9 N -0.84 -22.34 10.32 55.54 0.57 -21.77 16 10 Si 0.91 19.63 29.56 -169.99 -5.02 14.60 16 11 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 12 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 13 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 14 C 0.02 0.66 10.91 -16.80 -0.18 0.48 16 15 N -0.34 -8.45 11.88 30.97 0.37 -8.08 16 16 N -0.38 -8.59 3.18 -48.71 -0.16 -8.75 16 17 C 0.17 3.06 3.68 -66.81 -0.25 2.82 16 18 C -0.13 -2.08 6.51 -25.08 -0.16 -2.24 16 19 C -0.12 -1.55 6.91 -24.74 -0.17 -1.72 16 20 C -0.12 -1.61 6.83 -25.07 -0.17 -1.78 16 21 C -0.13 -2.09 6.54 -25.61 -0.17 -2.26 16 22 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 23 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.07 1.54 5.75 -51.93 -0.30 1.25 16 25 H 0.05 0.83 6.34 -51.93 -0.33 0.50 16 26 H 0.07 1.54 5.75 -51.93 -0.30 1.25 16 27 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.27 6.72 8.30 -40.82 -0.34 6.38 16 30 H 0.20 5.51 5.77 -52.49 -0.30 5.21 16 31 H 0.08 1.40 6.29 -51.93 -0.33 1.07 16 32 H 0.08 1.54 7.68 -51.93 -0.40 1.14 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.08 1.44 7.84 -51.93 -0.41 1.03 16 LS Contribution 303.35 15.07 4.57 4.57 Total: -1.00 -27.95 303.35 -7.82 -35.77 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -5.97 Total: 6.45 kcal Atomic # 6 Polarization: -20.61 SS G_CDS: -2.18 Total: -22.79 kcal Atomic # 7 Polarization: -39.39 SS G_CDS: 0.79 Total: -38.60 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.02 Total: 14.60 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -27.95 -7.82 -35.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259872323.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.640 kcal (2) G-P(sol) polarization free energy of solvation -27.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds