Wall clock time and date at job start Mon Mar 30 2020 06:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50699 * 109.47083 * 240.00115 * 2 1 3 5 5 C 1.39282 * 126.40594 * 60.02397 * 4 2 1 6 6 C 1.41593 * 126.55669 * 359.97438 * 5 4 2 7 7 H 1.08007 * 120.00058 * 0.02562 * 6 5 4 8 8 C 1.39694 * 120.00026 * 180.02562 * 6 5 4 9 9 N 1.31024 * 119.99937 * 359.97438 * 8 6 5 10 10 Si 1.86807 * 119.99954 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46819 * 60.00240 * 10 8 6 12 12 H 1.48503 * 109.46893 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47117 * 299.99951 * 10 8 6 14 14 C 1.41878 * 106.88643 * 179.97438 * 5 4 2 15 15 N 1.30318 * 108.04643 * 359.97438 * 14 5 4 16 16 N 1.34504 * 126.40674 * 239.70645 * 4 2 1 17 17 C 1.46501 * 125.67508 * 0.02659 * 16 4 2 18 18 C 1.54262 * 110.03179 * 237.16205 * 17 16 4 19 19 C 1.54883 * 104.19717 * 217.10619 * 18 17 16 20 20 C 1.54896 * 102.75094 * 37.94375 * 19 18 17 21 21 C 1.53879 * 110.03137 * 119.99812 * 17 16 4 22 22 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 24 24 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 25 25 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 26 26 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 27 27 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 28 28 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 29 29 H 0.97001 * 119.99624 * 179.97438 * 9 8 6 30 30 H 1.08001 * 125.97829 * 179.97438 * 14 5 4 31 31 H 1.08996 * 110.01314 * 358.60588 * 17 16 4 32 32 H 1.08999 * 110.48675 * 335.78364 * 18 17 16 33 33 H 1.09000 * 110.48609 * 98.42795 * 18 17 16 34 34 H 1.09003 * 110.75765 * 279.62825 * 19 18 17 35 35 H 1.08998 * 110.91876 * 156.32823 * 19 18 17 36 36 H 1.08998 * 110.48820 * 203.38218 * 20 19 18 37 37 H 1.08994 * 110.59622 * 80.78927 * 20 19 18 38 38 H 1.09005 * 110.02824 * 238.56952 * 21 17 16 39 39 H 1.09004 * 110.03117 * 359.94539 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.7798 -0.3524 -2.5526 6 6 1.0034 0.7457 -2.9955 7 1 0.5384 1.4034 -2.2759 8 6 0.8388 0.9784 -4.3630 9 7 1.4033 0.1808 -5.2359 10 14 -0.1862 2.4268 -4.9473 11 1 0.4056 3.6897 -4.4371 12 1 -0.2042 2.4535 -6.4319 13 1 -1.5740 2.2889 -4.4372 14 6 2.4493 -1.2986 -3.3708 15 7 3.0526 -2.1511 -2.5913 16 7 2.8132 -1.8052 -1.2573 17 6 3.3255 -2.5182 -0.0845 18 6 4.8660 -2.5811 -0.1355 19 6 5.2080 -3.9811 0.4318 20 6 4.0799 -4.8700 -0.1483 21 6 2.8257 -3.9736 -0.0926 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 1.8934 -0.5139 0.8900 26 1 1.6766 1.9563 -0.8900 27 1 1.6767 1.9564 0.8899 28 1 3.1299 1.4426 -0.0005 29 1 1.2886 0.3423 -6.1855 30 1 2.4577 -1.3103 -4.4507 31 1 3.0015 -2.0172 0.8276 32 1 5.2177 -2.4896 -1.1631 33 1 5.3005 -1.8000 0.4884 34 1 5.1737 -3.9753 1.5213 35 1 6.1835 -4.3161 0.0793 36 1 3.9408 -5.7593 0.4664 37 1 4.3034 -5.1499 -1.1777 38 1 2.2598 -4.1790 0.8161 39 1 2.2012 -4.1490 -0.9687 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259872323.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:13 Heat of formation + Delta-G solvation = 31.371375 kcal Electronic energy + Delta-G solvation = -18815.250003 eV Core-core repulsion = 16143.619020 eV Total energy + Delta-G solvation = -2671.630982 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.43868 -38.61258 -36.07960 -35.21570 -32.41765 -30.07862 -29.66422 -28.39511 -27.81627 -26.29957 -22.95909 -22.50848 -21.54917 -20.69070 -19.46019 -18.60792 -17.34168 -16.53746 -16.24882 -15.81292 -15.12362 -15.05193 -14.54790 -14.42241 -14.27129 -13.63572 -13.46059 -13.07049 -12.96985 -12.81067 -12.75164 -12.46563 -12.34387 -12.16354 -12.05686 -11.97345 -11.89399 -11.77477 -11.70465 -11.47810 -11.05238 -11.01698 -10.52162 -9.42574 -8.92373 -8.25393 -5.85415 1.34864 1.45274 1.55141 1.64622 2.26802 2.37813 2.50113 3.60433 3.65419 3.70208 3.88090 4.16199 4.22046 4.31799 4.39154 4.50099 4.51362 4.57146 4.76769 4.80089 4.87849 4.94976 5.01807 5.03913 5.07517 5.15385 5.16728 5.20547 5.24843 5.30684 5.33615 5.46022 5.58650 5.67909 5.83726 5.95009 6.24982 6.72305 6.90712 7.26788 7.29510 7.69608 8.75245 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.028902 B = 0.007046 C = 0.006175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.574798 B = 3972.804347 C = 4533.469572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.003 3.997 3 C -0.135 4.135 4 C -0.067 4.067 5 C -0.054 4.054 6 C -0.450 4.450 7 H 0.080 0.920 8 C 0.013 3.987 9 N -0.877 5.877 10 Si 0.976 3.024 11 H -0.265 1.265 12 H -0.281 1.281 13 H -0.265 1.265 14 C -0.013 4.013 15 N -0.352 5.352 16 N -0.370 5.370 17 C 0.153 3.847 18 C -0.130 4.130 19 C -0.108 4.108 20 C -0.115 4.115 21 C -0.128 4.128 22 H 0.037 0.963 23 H 0.077 0.923 24 H 0.050 0.950 25 H 0.074 0.926 26 H 0.050 0.950 27 H 0.077 0.923 28 H 0.038 0.962 29 H 0.272 0.728 30 H 0.179 0.821 31 H 0.108 0.892 32 H 0.046 0.954 33 H 0.077 0.923 34 H 0.094 0.906 35 H 0.076 0.924 36 H 0.091 0.909 37 H 0.047 0.953 38 H 0.090 0.910 39 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.367 -3.264 12.753 13.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.017 4.017 3 C -0.193 4.193 4 C -0.192 4.192 5 C -0.064 4.064 6 C -0.484 4.484 7 H 0.098 0.902 8 C -0.192 4.192 9 N -0.510 5.510 10 Si 0.800 3.200 11 H -0.190 1.190 12 H -0.206 1.206 13 H -0.190 1.190 14 C -0.197 4.197 15 N -0.175 5.175 16 N -0.158 5.158 17 C 0.051 3.949 18 C -0.168 4.168 19 C -0.146 4.146 20 C -0.153 4.153 21 C -0.166 4.166 22 H 0.057 0.943 23 H 0.096 0.904 24 H 0.069 0.931 25 H 0.092 0.908 26 H 0.069 0.931 27 H 0.096 0.904 28 H 0.057 0.943 29 H 0.082 0.918 30 H 0.196 0.804 31 H 0.125 0.875 32 H 0.064 0.936 33 H 0.096 0.904 34 H 0.112 0.888 35 H 0.095 0.905 36 H 0.109 0.891 37 H 0.065 0.935 38 H 0.109 0.891 39 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 3.140 -4.362 12.645 13.740 hybrid contribution -0.921 1.257 -1.265 2.007 sum 2.219 -3.105 11.381 12.004 Atomic orbital electron populations 1.21764 0.94416 1.00922 1.02184 1.19312 0.95712 0.95049 0.91630 1.21766 0.99842 0.95503 1.02186 1.21434 1.06037 0.95228 0.96493 1.18218 1.00923 0.97698 0.89544 1.19035 1.27892 1.09705 0.91794 0.90231 1.26473 0.96495 0.99414 0.96858 1.69608 1.41131 1.37643 1.02615 0.85331 0.79031 0.78666 0.77020 1.18984 1.20619 1.18980 1.24831 0.99504 0.94950 1.00401 1.76430 1.27057 1.26092 0.87971 1.47945 1.41038 1.22737 1.04033 1.22017 0.94828 0.93024 0.85054 1.22698 0.93525 0.99552 1.01054 1.22428 0.98530 0.92349 1.01272 1.22282 0.93925 0.98297 1.00796 1.22481 0.98885 0.93417 1.01845 0.94343 0.90414 0.93130 0.90758 0.93135 0.90412 0.94321 0.91762 0.80417 0.87458 0.93559 0.90446 0.88751 0.90494 0.89085 0.93459 0.89105 0.94316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.68 9.04 71.98 0.65 -4.03 16 2 C 0.00 0.12 3.04 -11.54 -0.04 0.08 16 3 C -0.14 -4.68 9.04 71.98 0.65 -4.03 16 4 C -0.07 -3.15 5.75 42.40 0.24 -2.91 16 5 C -0.05 -2.98 5.79 -21.30 -0.12 -3.10 16 6 C -0.45 -24.46 7.69 23.45 0.18 -24.28 16 7 H 0.08 4.07 4.71 -2.91 -0.01 4.05 16 8 C 0.01 0.71 5.49 85.17 0.47 1.18 16 9 N -0.88 -49.10 10.32 21.79 0.22 -48.87 16 10 Si 0.98 41.30 29.56 68.60 2.03 43.32 16 11 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 12 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 13 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 14 C -0.01 -0.74 10.91 85.82 0.94 0.20 16 15 N -0.35 -18.52 11.88 -55.94 -0.66 -19.19 16 16 N -0.37 -16.74 3.18 -308.02 -0.98 -17.72 16 17 C 0.15 5.13 3.68 45.72 0.17 5.30 16 18 C -0.13 -3.89 6.51 31.67 0.21 -3.68 16 19 C -0.11 -2.36 6.91 31.89 0.22 -2.14 16 20 C -0.12 -2.84 6.83 31.67 0.22 -2.62 16 21 C -0.13 -3.83 6.54 31.32 0.20 -3.62 16 22 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 23 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 24 H 0.05 2.01 5.75 -2.39 -0.01 2.00 16 25 H 0.07 2.33 6.34 -2.39 -0.02 2.31 16 26 H 0.05 2.01 5.75 -2.39 -0.01 2.00 16 27 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.27 14.22 8.30 -92.71 -0.77 13.45 16 30 H 0.18 10.79 5.77 -2.91 -0.02 10.78 16 31 H 0.11 3.12 6.29 -2.39 -0.02 3.10 16 32 H 0.05 1.73 7.68 -2.39 -0.02 1.71 16 33 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.09 2.18 8.14 -2.38 -0.02 2.16 16 39 H 0.04 1.45 7.84 -2.39 -0.02 1.43 16 Total: -1.00 -65.02 303.35 5.63 -59.39 By element: Atomic # 1 Polarization: 25.68 SS G_CDS: 1.03 Total: 26.71 kcal Atomic # 6 Polarization: -47.63 SS G_CDS: 3.99 Total: -43.65 kcal Atomic # 7 Polarization: -84.36 SS G_CDS: -1.42 Total: -85.78 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 2.03 Total: 43.32 kcal Total: -65.02 5.63 -59.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259872323.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.763 kcal (2) G-P(sol) polarization free energy of solvation -65.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds