Wall clock time and date at job start Mon Mar 30 2020 05:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.35320 * 126.12386 * 2 1 4 4 C 1.50699 * 126.04194 * 0.02562 * 3 2 1 5 5 H 1.08999 * 109.47081 * 359.71704 * 4 3 2 6 6 C 1.53006 * 109.47004 * 119.71343 * 4 3 2 7 7 C 1.50693 * 109.47074 * 239.71610 * 4 3 2 8 8 H 1.08003 * 120.00292 * 354.35517 * 7 4 3 9 9 C 1.37885 * 119.99830 * 174.35992 * 7 4 3 10 10 N 1.31518 * 119.99981 * 156.91854 * 9 7 4 11 11 Si 1.86799 * 119.99941 * 336.91837 * 9 7 4 12 12 H 1.48502 * 109.47029 * 180.02562 * 11 9 7 13 13 H 1.48499 * 109.46828 * 299.99893 * 11 9 7 14 14 H 1.48496 * 109.47588 * 59.99853 * 11 9 7 15 15 C 1.39874 * 107.91853 * 179.75747 * 3 2 1 16 16 N 1.30831 * 108.20287 * 0.24752 * 15 3 2 17 17 N 1.34946 * 126.13129 * 180.17514 * 2 1 3 18 18 C 1.46502 * 126.03791 * 0.02562 * 17 2 1 19 19 C 1.54261 * 110.02992 * 237.47564 * 18 17 2 20 20 C 1.54889 * 104.19599 * 217.10031 * 19 18 17 21 21 C 1.54901 * 102.74732 * 37.94144 * 20 19 18 22 22 C 1.53872 * 110.03590 * 120.30308 * 18 17 2 23 23 H 1.09001 * 109.47351 * 90.02628 * 1 2 3 24 24 H 1.09000 * 109.46980 * 210.02409 * 1 2 3 25 25 H 1.09003 * 109.47143 * 330.02091 * 1 2 3 26 26 H 1.09000 * 109.46984 * 173.22350 * 6 4 3 27 27 H 1.09003 * 109.47051 * 293.21903 * 6 4 3 28 28 H 1.08998 * 109.46916 * 53.22066 * 6 4 3 29 29 H 0.97003 * 119.99696 * 354.92154 * 10 9 7 30 30 H 1.08000 * 125.89797 * 180.25592 * 15 3 2 31 31 H 1.09003 * 110.01212 * 358.91132 * 18 17 2 32 32 H 1.08999 * 110.48760 * 335.77772 * 19 18 17 33 33 H 1.09003 * 110.48700 * 98.42731 * 19 18 17 34 34 H 1.08999 * 110.75720 * 279.62960 * 20 19 18 35 35 H 1.09001 * 110.92163 * 156.32817 * 20 19 18 36 36 H 1.08998 * 110.48456 * 203.37913 * 21 20 19 37 37 H 1.08995 * 110.59822 * 80.79132 * 21 20 19 38 38 H 1.09000 * 110.03682 * 238.57320 * 22 18 17 39 39 H 1.08999 * 110.03264 * 359.95383 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3047 1.0930 0.0000 4 6 1.8432 2.5276 0.0005 5 1 0.7536 2.5587 -0.0041 6 6 2.3681 3.2318 1.2534 7 6 2.3709 3.2255 -1.2263 8 1 3.0533 2.7126 -1.8879 9 6 1.9827 4.5191 -1.5042 10 7 2.7373 5.2834 -2.2633 11 14 0.3850 5.1859 -0.8027 12 1 0.1975 6.5905 -1.2467 13 1 -0.7504 4.3591 -1.2848 14 1 0.4375 5.1379 0.6806 15 6 3.6334 0.6560 0.0056 16 7 3.6334 -0.6523 0.0035 17 7 2.3026 -1.0899 -0.0033 18 6 1.8540 -2.4846 -0.0081 19 6 2.4336 -3.2302 1.2116 20 6 2.7492 -4.6485 0.6750 21 6 3.2727 -4.3643 -0.7549 22 6 2.3874 -3.2056 -1.2584 23 1 -0.3634 -0.0005 -1.0277 24 1 -0.3633 -0.8898 0.5142 25 1 -0.3633 0.8902 0.5135 26 1 2.1377 4.2956 1.1958 27 1 1.8928 2.8044 2.1364 28 1 3.4476 3.0968 1.3206 29 1 3.6012 4.9635 -2.5669 30 1 4.5083 1.2893 0.0110 31 1 0.7650 -2.5262 0.0108 32 1 3.3443 -2.7426 1.5595 33 1 1.6967 -3.2809 2.0133 34 1 1.8465 -5.2586 0.6418 35 1 3.5177 -5.1310 1.2789 36 1 3.1481 -5.2426 -1.3882 37 1 4.3191 -4.0606 -0.7268 38 1 1.5574 -3.5979 -1.8459 39 1 2.9794 -2.5177 -1.8621 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259895164.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:47 Heat of formation + Delta-G solvation = 34.059316 kcal Electronic energy + Delta-G solvation = -18427.198419 eV Core-core repulsion = 15755.683995 eV Total energy + Delta-G solvation = -2671.514424 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.23227 -38.87422 -36.29870 -33.67338 -33.64881 -31.36386 -29.74352 -28.02916 -27.56250 -26.61370 -23.33269 -22.75909 -21.63707 -20.18295 -20.00856 -19.18039 -17.66225 -16.55743 -16.05815 -15.96399 -15.60008 -15.22921 -14.56924 -14.47971 -14.36567 -14.10023 -13.61822 -13.56130 -13.22790 -13.06123 -12.91430 -12.49941 -12.30720 -12.14070 -12.12085 -12.02867 -11.95554 -11.74350 -11.54036 -11.52638 -11.18425 -10.96011 -10.29254 -9.98014 -9.08001 -8.53554 -6.21782 1.01936 1.52981 1.60063 1.70671 1.79500 2.03404 2.59071 3.11236 3.43259 3.56135 3.74813 3.95547 4.01169 4.24600 4.33816 4.42255 4.45418 4.51283 4.62843 4.68744 4.71259 4.76169 4.83794 4.95358 4.97513 4.99387 5.06690 5.08599 5.13770 5.18693 5.29271 5.34699 5.41361 5.46303 5.76089 5.92036 6.11903 6.22483 6.42474 6.69581 6.90648 7.52280 8.70442 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.039522 B = 0.005572 C = 0.005418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.289381 B = 5023.900279 C = 5166.881907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.057 3.943 3 C -0.211 4.211 4 C 0.087 3.913 5 H 0.035 0.965 6 C -0.131 4.131 7 C -0.589 4.589 8 H 0.007 0.993 9 C -0.018 4.018 10 N -0.939 5.939 11 Si 1.078 2.922 12 H -0.294 1.294 13 H -0.260 1.260 14 H -0.245 1.245 15 C 0.034 3.966 16 N -0.322 5.322 17 N -0.364 5.364 18 C 0.147 3.853 19 C -0.129 4.129 20 C -0.110 4.110 21 C -0.119 4.119 22 C -0.132 4.132 23 H 0.080 0.920 24 H 0.096 0.904 25 H 0.086 0.914 26 H 0.039 0.961 27 H 0.049 0.951 28 H 0.032 0.968 29 H 0.250 0.750 30 H 0.162 0.838 31 H 0.128 0.872 32 H 0.052 0.948 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.077 0.923 36 H 0.088 0.912 37 H 0.048 0.952 38 H 0.095 0.905 39 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.074 -19.686 7.989 22.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.069 4.069 3 C -0.222 4.222 4 C 0.067 3.933 5 H 0.053 0.947 6 C -0.189 4.189 7 C -0.626 4.626 8 H 0.026 0.974 9 C -0.216 4.216 10 N -0.575 5.575 11 Si 0.899 3.101 12 H -0.220 1.220 13 H -0.185 1.185 14 H -0.169 1.169 15 C -0.150 4.150 16 N -0.144 5.144 17 N -0.149 5.149 18 C 0.046 3.954 19 C -0.168 4.168 20 C -0.148 4.148 21 C -0.156 4.156 22 C -0.170 4.170 23 H 0.099 0.901 24 H 0.115 0.885 25 H 0.104 0.896 26 H 0.058 0.942 27 H 0.068 0.932 28 H 0.051 0.949 29 H 0.058 0.942 30 H 0.179 0.821 31 H 0.145 0.855 32 H 0.071 0.929 33 H 0.107 0.893 34 H 0.113 0.887 35 H 0.096 0.904 36 H 0.106 0.894 37 H 0.067 0.933 38 H 0.114 0.886 39 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -7.373 -19.587 7.977 22.398 hybrid contribution 1.667 0.072 -0.733 1.822 sum -5.707 -19.515 7.245 21.585 Atomic orbital electron populations 1.20507 0.85173 1.04744 1.03816 1.21293 0.95985 0.86659 1.03004 1.20195 0.92421 0.96417 1.13152 1.17359 0.95389 0.87460 0.93078 0.94680 1.22009 0.99853 0.99471 0.97592 1.22062 1.30266 1.00008 1.10310 0.97434 1.27200 1.04971 0.93882 0.95501 1.70983 1.11163 1.37866 1.37498 0.83647 0.72963 0.75450 0.78039 1.22035 1.18496 1.16876 1.23565 0.98435 0.91943 1.01069 1.77052 0.98720 1.12209 1.26434 1.48798 1.02809 1.06007 1.57272 1.22386 1.00418 0.75284 0.97333 1.22719 1.01167 0.96429 0.96451 1.22449 1.02292 0.94955 0.95115 1.22309 0.98408 0.97481 0.97429 1.22507 1.00582 0.97590 0.96316 0.90136 0.88490 0.89563 0.94178 0.93234 0.94905 0.94185 0.82106 0.85467 0.92903 0.89345 0.88690 0.90441 0.89377 0.93314 0.88641 0.94185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.22 9.59 71.23 0.68 -1.53 16 2 C 0.06 2.08 6.93 41.40 0.29 2.37 16 3 C -0.21 -9.32 4.75 -20.14 -0.10 -9.41 16 4 C 0.09 4.15 2.20 -12.29 -0.03 4.12 16 5 H 0.04 1.58 5.37 -2.39 -0.01 1.57 16 6 C -0.13 -5.79 8.87 71.98 0.64 -5.16 16 7 C -0.59 -34.23 8.64 25.60 0.22 -34.01 16 8 H 0.01 0.48 7.93 -2.91 -0.02 0.46 16 9 C -0.02 -1.06 5.20 84.66 0.44 -0.62 16 10 N -0.94 -60.07 13.70 21.45 0.29 -59.78 16 11 Si 1.08 49.56 26.44 68.60 1.81 51.37 16 12 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 13 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 14 H -0.24 -9.95 6.14 99.48 0.61 -9.34 16 15 C 0.03 1.52 11.35 85.24 0.97 2.49 16 16 N -0.32 -13.13 12.03 -57.02 -0.69 -13.81 16 17 N -0.36 -12.41 3.20 -310.90 -1.00 -13.41 16 18 C 0.15 3.45 3.69 45.71 0.17 3.62 16 19 C -0.13 -2.64 6.51 31.67 0.21 -2.43 16 20 C -0.11 -1.65 6.91 31.89 0.22 -1.43 16 21 C -0.12 -2.18 6.83 31.67 0.22 -1.96 16 22 C -0.13 -2.96 6.55 31.32 0.21 -2.75 16 23 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 24 H 0.10 1.78 7.10 -2.39 -0.02 1.76 16 25 H 0.09 2.27 7.14 -2.39 -0.02 2.25 16 26 H 0.04 1.80 5.47 -2.39 -0.01 1.78 16 27 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.03 1.45 7.83 -2.39 -0.02 1.43 16 29 H 0.25 16.34 8.73 -92.71 -0.81 15.53 16 30 H 0.16 7.24 8.06 -2.91 -0.02 7.22 16 31 H 0.13 2.25 6.71 -2.39 -0.02 2.23 16 32 H 0.05 1.42 7.70 -2.39 -0.02 1.40 16 33 H 0.09 1.45 8.14 -2.39 -0.02 1.44 16 34 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.04 1.21 7.85 -2.39 -0.02 1.19 16 Total: -1.00 -72.30 308.77 5.44 -66.86 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: 0.88 Total: 15.47 kcal Atomic # 6 Polarization: -50.83 SS G_CDS: 4.13 Total: -46.70 kcal Atomic # 7 Polarization: -85.61 SS G_CDS: -1.39 Total: -87.00 kcal Atomic # 14 Polarization: 49.56 SS G_CDS: 1.81 Total: 51.37 kcal Total: -72.30 5.44 -66.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259895164.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.916 kcal (2) G-P(sol) polarization free energy of solvation -72.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds