Wall clock time and date at job start Mon Mar 30 2020 05:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35309 * 126.13299 * 2 1 4 4 C 1.50709 * 126.03673 * 0.03214 * 3 2 1 5 5 H 1.09001 * 109.46934 * 0.02562 * 4 3 2 6 6 C 1.52994 * 109.47259 * 240.00148 * 4 3 2 7 7 C 1.50699 * 109.47277 * 119.99967 * 4 3 2 8 8 H 1.08004 * 119.99804 * 5.46322 * 7 4 3 9 9 C 1.37873 * 120.00261 * 185.46590 * 7 4 3 10 10 N 1.31513 * 119.99898 * 9.58079 * 9 7 4 11 11 Si 1.86804 * 120.00180 * 189.58219 * 9 7 4 12 12 H 1.48498 * 109.46859 * 84.99087 * 11 9 7 13 13 H 1.48502 * 109.47132 * 204.99166 * 11 9 7 14 14 H 1.48499 * 109.46941 * 324.99188 * 11 9 7 15 15 C 1.39867 * 107.92472 * 179.90170 * 3 2 1 16 16 N 1.30831 * 108.20184 * 0.36080 * 15 3 2 17 17 N 1.34959 * 126.12369 * 180.30658 * 2 1 3 18 18 C 1.46496 * 126.03554 * 359.94672 * 17 2 1 19 19 C 1.54266 * 110.02902 * 237.16206 * 18 17 2 20 20 C 1.54891 * 104.19851 * 217.10618 * 19 18 17 21 21 C 1.54896 * 102.74503 * 37.94457 * 20 19 18 22 22 C 1.53882 * 110.03199 * 120.00105 * 18 17 2 23 23 H 1.08995 * 109.47252 * 269.69117 * 1 2 3 24 24 H 1.09002 * 109.46814 * 149.68890 * 1 2 3 25 25 H 1.09004 * 109.46743 * 29.68845 * 1 2 3 26 26 H 1.09004 * 109.47209 * 303.41909 * 6 4 3 27 27 H 1.09002 * 109.47142 * 63.41070 * 6 4 3 28 28 H 1.08995 * 109.47132 * 183.41780 * 6 4 3 29 29 H 0.97001 * 120.00456 * 180.02562 * 10 9 7 30 30 H 1.08006 * 125.89998 * 180.14572 * 15 3 2 31 31 H 1.08996 * 110.01873 * 358.60419 * 18 17 2 32 32 H 1.08994 * 110.49096 * 335.79188 * 19 18 17 33 33 H 1.09009 * 110.48376 * 98.42933 * 19 18 17 34 34 H 1.08999 * 110.75560 * 279.63768 * 20 19 18 35 35 H 1.08997 * 110.91853 * 156.33409 * 20 19 18 36 36 H 1.09000 * 110.48626 * 203.38121 * 21 20 19 37 37 H 1.08995 * 110.59637 * 80.79404 * 21 20 19 38 38 H 1.09001 * 110.02763 * 238.57110 * 22 18 17 39 39 H 1.09003 * 110.02711 * 359.94713 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3049 1.0928 0.0000 4 6 1.8434 2.5275 0.0007 5 1 0.7539 2.5587 0.0016 6 6 2.3732 3.2343 -1.2485 7 6 2.3664 3.2229 1.2311 8 1 3.0439 2.7074 1.8958 9 6 1.9801 4.5170 1.5084 10 7 1.0166 5.0791 0.8117 11 14 2.8252 5.4720 2.8734 12 1 4.0597 6.1049 2.3437 13 1 1.9087 6.5239 3.3823 14 1 3.1788 4.5463 3.9794 15 6 3.6335 0.6558 0.0023 16 7 3.6334 -0.6525 -0.0042 17 7 2.3026 -1.0901 -0.0058 18 6 1.8538 -2.4846 -0.0122 19 6 2.4410 -3.2342 1.2015 20 6 2.7531 -4.6508 0.6586 21 6 3.2677 -4.3621 -0.7736 22 6 2.3795 -3.2018 -1.2681 23 1 -0.3633 -0.0055 1.0276 24 1 -0.3633 -0.8872 -0.5187 25 1 -0.3633 0.8928 -0.5090 26 1 3.4596 3.1504 -1.2803 27 1 1.9469 2.7693 -2.1374 28 1 2.0908 4.2866 -1.2179 29 1 0.7450 5.9898 1.0065 30 1 4.5085 1.2890 0.0051 31 1 0.7649 -2.5262 0.0134 32 1 3.3538 -2.7477 1.5453 33 1 1.7091 -3.2873 2.0077 34 1 1.8502 -5.2607 0.6289 35 1 3.5253 -5.1353 1.2561 36 1 3.1392 -5.2384 -1.4090 37 1 4.3143 -4.0586 -0.7511 38 1 1.5457 -3.5922 -1.8516 39 1 2.9678 -2.5120 -1.8732 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259895167.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:50 Heat of formation + Delta-G solvation = 51.424883 kcal Electronic energy + Delta-G solvation = -18363.272121 eV Core-core repulsion = 15692.510725 eV Total energy + Delta-G solvation = -2670.761397 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.64834 -37.79084 -34.24911 -32.18211 -31.48610 -29.58089 -28.79428 -26.73507 -25.88374 -24.92889 -21.75388 -21.30491 -20.75169 -18.70756 -18.38010 -16.54732 -15.87768 -15.40375 -14.77750 -14.52619 -14.16616 -13.44051 -13.35527 -12.96557 -12.69895 -12.37371 -12.06855 -11.79512 -11.64767 -11.43109 -11.31596 -11.22698 -11.18250 -10.85222 -10.81496 -10.73938 -10.64105 -10.29948 -10.18540 -9.87465 -9.21945 -8.90247 -8.43748 -8.23115 -7.21768 -5.93032 -3.93301 2.61689 3.11227 3.36752 3.42915 3.46226 3.80831 4.45000 4.52432 4.53752 4.78494 5.14426 5.23874 5.37013 5.39740 5.41766 5.45191 5.54984 5.62613 5.74822 5.78738 5.90520 5.93693 6.02617 6.12745 6.16119 6.26880 6.40697 6.62649 6.68236 6.91718 6.95404 7.19883 7.32747 7.59997 7.78284 7.89199 8.05958 8.10338 8.51793 8.61905 9.09557 9.69101 11.15378 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.036773 B = 0.005369 C = 0.005205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.248154 B = 5214.206118 C = 5378.039123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.046 3.954 3 C -0.172 4.172 4 C 0.106 3.894 5 H 0.038 0.962 6 C -0.123 4.123 7 C -0.500 4.500 8 H 0.054 0.946 9 C 0.062 3.938 10 N -0.892 5.892 11 Si 0.885 3.115 12 H -0.280 1.280 13 H -0.289 1.289 14 H -0.276 1.276 15 C 0.053 3.947 16 N -0.313 5.313 17 N -0.378 5.378 18 C 0.163 3.837 19 C -0.132 4.132 20 C -0.121 4.121 21 C -0.119 4.119 22 C -0.132 4.132 23 H 0.071 0.929 24 H 0.053 0.947 25 H 0.086 0.914 26 H 0.027 0.973 27 H 0.009 0.991 28 H 0.063 0.937 29 H 0.259 0.741 30 H 0.174 0.826 31 H 0.096 0.904 32 H 0.083 0.917 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.188 -15.996 -2.790 16.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.078 4.078 3 C -0.183 4.183 4 C 0.086 3.914 5 H 0.056 0.944 6 C -0.181 4.181 7 C -0.539 4.539 8 H 0.072 0.928 9 C -0.138 4.138 10 N -0.530 5.530 11 Si 0.713 3.287 12 H -0.206 1.206 13 H -0.215 1.215 14 H -0.201 1.201 15 C -0.132 4.132 16 N -0.135 5.135 17 N -0.164 5.164 18 C 0.060 3.940 19 C -0.170 4.170 20 C -0.159 4.159 21 C -0.157 4.157 22 C -0.170 4.170 23 H 0.089 0.911 24 H 0.072 0.928 25 H 0.104 0.896 26 H 0.046 0.954 27 H 0.028 0.972 28 H 0.082 0.918 29 H 0.069 0.931 30 H 0.191 0.809 31 H 0.114 0.886 32 H 0.102 0.898 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.369 -17.005 -2.813 17.240 hybrid contribution -0.007 1.429 0.819 1.647 sum 0.362 -15.576 -1.993 15.707 Atomic orbital electron populations 1.20305 0.88444 1.02591 1.02560 1.20764 0.94079 0.87212 1.05728 1.20609 0.91532 0.97288 1.08848 1.17226 0.96450 0.83969 0.93744 0.94396 1.21688 0.98320 1.01876 0.96227 1.21122 1.27414 0.97702 1.07646 0.92779 1.24930 0.94743 0.97867 0.96296 1.69960 1.27422 1.14192 1.41475 0.86723 0.79632 0.79835 0.82503 1.20642 1.21485 1.20123 1.23652 0.98511 0.91260 0.99781 1.77087 0.96898 1.13129 1.26353 1.48394 1.03876 1.04325 1.59758 1.21742 0.98522 0.77777 0.95921 1.22732 1.02189 0.95356 0.96707 1.22452 1.00872 0.96276 0.96338 1.22300 0.99965 0.97403 0.96043 1.22498 0.99819 0.97753 0.96930 0.91067 0.92764 0.89554 0.95386 0.97177 0.91769 0.93149 0.80938 0.88608 0.89809 0.91322 0.91478 0.91311 0.91749 0.91199 0.91304 0.90446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.30 9.59 36.01 0.35 -0.96 16 2 C 0.05 0.90 6.93 -82.26 -0.57 0.33 16 3 C -0.17 -3.85 4.75 -105.05 -0.50 -4.35 16 4 C 0.11 2.65 2.47 -92.92 -0.23 2.42 16 5 H 0.04 1.02 6.73 -51.93 -0.35 0.67 16 6 C -0.12 -2.96 8.99 37.15 0.33 -2.63 16 7 C -0.50 -13.78 8.34 -34.44 -0.29 -14.06 16 8 H 0.05 1.51 7.70 -52.48 -0.40 1.11 16 9 C 0.06 1.73 5.17 -17.82 -0.09 1.64 16 10 N -0.89 -25.53 12.16 55.43 0.67 -24.85 16 11 Si 0.88 21.48 29.55 -169.99 -5.02 16.45 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 13 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 14 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 15 C 0.05 1.13 11.41 -17.37 -0.20 0.93 16 16 N -0.31 -6.25 12.03 30.62 0.37 -5.89 16 17 N -0.38 -6.80 3.20 -49.61 -0.16 -6.96 16 18 C 0.16 2.22 3.69 -66.81 -0.25 1.98 16 19 C -0.13 -1.63 6.51 -25.07 -0.16 -1.80 16 20 C -0.12 -1.18 6.91 -24.73 -0.17 -1.35 16 21 C -0.12 -1.23 6.83 -25.07 -0.17 -1.40 16 22 C -0.13 -1.58 6.55 -25.61 -0.17 -1.75 16 23 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 24 H 0.05 0.70 7.13 -51.93 -0.37 0.33 16 25 H 0.09 1.46 7.13 -51.93 -0.37 1.09 16 26 H 0.03 0.63 7.93 -51.93 -0.41 0.22 16 27 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 28 H 0.06 1.67 6.84 -51.93 -0.35 1.32 16 29 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 30 H 0.17 3.45 8.06 -52.48 -0.42 3.03 16 31 H 0.10 1.14 6.73 -51.93 -0.35 0.79 16 32 H 0.08 1.25 7.69 -51.93 -0.40 0.85 16 33 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.08 1.12 7.86 -51.93 -0.41 0.71 16 LS Contribution 313.65 15.07 4.73 4.73 Total: -1.00 -30.01 313.65 -7.89 -37.89 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -6.36 Total: -0.39 kcal Atomic # 6 Polarization: -18.87 SS G_CDS: -2.12 Total: -20.99 kcal Atomic # 7 Polarization: -38.58 SS G_CDS: 0.88 Total: -37.69 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.01 -7.89 -37.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259895167.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.318 kcal (2) G-P(sol) polarization free energy of solvation -30.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds