Wall clock time and date at job start Mon Mar 30 2020 05:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35309 * 126.13299 * 2 1 4 4 C 1.50709 * 126.03673 * 0.03214 * 3 2 1 5 5 H 1.09001 * 109.46934 * 0.02562 * 4 3 2 6 6 C 1.52994 * 109.47259 * 240.00148 * 4 3 2 7 7 C 1.50699 * 109.47277 * 119.99967 * 4 3 2 8 8 H 1.08004 * 119.99804 * 5.46322 * 7 4 3 9 9 C 1.37873 * 120.00261 * 185.46590 * 7 4 3 10 10 N 1.31513 * 119.99898 * 9.58079 * 9 7 4 11 11 Si 1.86804 * 120.00180 * 189.58219 * 9 7 4 12 12 H 1.48498 * 109.46859 * 84.99087 * 11 9 7 13 13 H 1.48502 * 109.47132 * 204.99166 * 11 9 7 14 14 H 1.48499 * 109.46941 * 324.99188 * 11 9 7 15 15 C 1.39867 * 107.92472 * 179.90170 * 3 2 1 16 16 N 1.30831 * 108.20184 * 0.36080 * 15 3 2 17 17 N 1.34959 * 126.12369 * 180.30658 * 2 1 3 18 18 C 1.46496 * 126.03554 * 359.94672 * 17 2 1 19 19 C 1.54266 * 110.02902 * 237.16206 * 18 17 2 20 20 C 1.54891 * 104.19851 * 217.10618 * 19 18 17 21 21 C 1.54896 * 102.74503 * 37.94457 * 20 19 18 22 22 C 1.53882 * 110.03199 * 120.00105 * 18 17 2 23 23 H 1.08995 * 109.47252 * 269.69117 * 1 2 3 24 24 H 1.09002 * 109.46814 * 149.68890 * 1 2 3 25 25 H 1.09004 * 109.46743 * 29.68845 * 1 2 3 26 26 H 1.09004 * 109.47209 * 303.41909 * 6 4 3 27 27 H 1.09002 * 109.47142 * 63.41070 * 6 4 3 28 28 H 1.08995 * 109.47132 * 183.41780 * 6 4 3 29 29 H 0.97001 * 120.00456 * 180.02562 * 10 9 7 30 30 H 1.08006 * 125.89998 * 180.14572 * 15 3 2 31 31 H 1.08996 * 110.01873 * 358.60419 * 18 17 2 32 32 H 1.08994 * 110.49096 * 335.79188 * 19 18 17 33 33 H 1.09009 * 110.48376 * 98.42933 * 19 18 17 34 34 H 1.08999 * 110.75560 * 279.63768 * 20 19 18 35 35 H 1.08997 * 110.91853 * 156.33409 * 20 19 18 36 36 H 1.09000 * 110.48626 * 203.38121 * 21 20 19 37 37 H 1.08995 * 110.59637 * 80.79404 * 21 20 19 38 38 H 1.09001 * 110.02763 * 238.57110 * 22 18 17 39 39 H 1.09003 * 110.02711 * 359.94713 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3049 1.0928 0.0000 4 6 1.8434 2.5275 0.0007 5 1 0.7539 2.5587 0.0016 6 6 2.3732 3.2343 -1.2485 7 6 2.3664 3.2229 1.2311 8 1 3.0439 2.7074 1.8958 9 6 1.9801 4.5170 1.5084 10 7 1.0166 5.0791 0.8117 11 14 2.8252 5.4720 2.8734 12 1 4.0597 6.1049 2.3437 13 1 1.9087 6.5239 3.3823 14 1 3.1788 4.5463 3.9794 15 6 3.6335 0.6558 0.0023 16 7 3.6334 -0.6525 -0.0042 17 7 2.3026 -1.0901 -0.0058 18 6 1.8538 -2.4846 -0.0122 19 6 2.4410 -3.2342 1.2015 20 6 2.7531 -4.6508 0.6586 21 6 3.2677 -4.3621 -0.7736 22 6 2.3795 -3.2018 -1.2681 23 1 -0.3633 -0.0055 1.0276 24 1 -0.3633 -0.8872 -0.5187 25 1 -0.3633 0.8928 -0.5090 26 1 3.4596 3.1504 -1.2803 27 1 1.9469 2.7693 -2.1374 28 1 2.0908 4.2866 -1.2179 29 1 0.7450 5.9898 1.0065 30 1 4.5085 1.2890 0.0051 31 1 0.7649 -2.5262 0.0134 32 1 3.3538 -2.7477 1.5453 33 1 1.7091 -3.2873 2.0077 34 1 1.8502 -5.2607 0.6289 35 1 3.5253 -5.1353 1.2561 36 1 3.1392 -5.2384 -1.4090 37 1 4.3143 -4.0586 -0.7511 38 1 1.5457 -3.5922 -1.8516 39 1 2.9678 -2.5120 -1.8732 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259895167.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:49 Heat of formation + Delta-G solvation = 35.759565 kcal Electronic energy + Delta-G solvation = -18363.951421 eV Core-core repulsion = 15692.510725 eV Total energy + Delta-G solvation = -2671.440696 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.14459 -38.82204 -36.17474 -33.58446 -33.33392 -31.11019 -29.70592 -27.95167 -27.44562 -27.02751 -23.42697 -22.76246 -21.60160 -20.03450 -19.99152 -18.21261 -17.49697 -16.67994 -16.27483 -15.97581 -15.52107 -15.04868 -14.60843 -14.37593 -14.30302 -13.67666 -13.61977 -13.45882 -12.99057 -12.93478 -12.89140 -12.70136 -12.43508 -12.22855 -12.09752 -12.06154 -12.00460 -11.87007 -11.56914 -11.48612 -11.06480 -10.91544 -10.35113 -9.90365 -8.86404 -8.04336 -6.11865 1.09005 1.42987 1.44624 1.53073 1.77206 2.12451 2.50671 3.24570 3.47671 3.60074 3.80270 4.01421 4.08669 4.28957 4.36859 4.46550 4.49204 4.58484 4.72653 4.75976 4.84663 4.85616 4.88749 5.00035 5.04040 5.10545 5.16092 5.17056 5.21688 5.30325 5.37157 5.44053 5.46869 5.67653 5.91252 6.01234 6.14437 6.39679 6.52860 6.96387 6.99816 7.53567 9.02212 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.036773 B = 0.005369 C = 0.005205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.248154 B = 5214.206118 C = 5378.039123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.052 3.948 3 C -0.212 4.212 4 C 0.111 3.889 5 H 0.014 0.986 6 C -0.112 4.112 7 C -0.514 4.514 8 H 0.042 0.958 9 C 0.018 3.982 10 N -0.917 5.917 11 Si 0.944 3.056 12 H -0.275 1.275 13 H -0.284 1.284 14 H -0.275 1.275 15 C 0.037 3.963 16 N -0.320 5.320 17 N -0.366 5.366 18 C 0.147 3.853 19 C -0.132 4.132 20 C -0.111 4.111 21 C -0.117 4.117 22 C -0.128 4.128 23 H 0.078 0.922 24 H 0.093 0.907 25 H 0.073 0.927 26 H 0.031 0.969 27 H 0.024 0.976 28 H 0.038 0.962 29 H 0.260 0.740 30 H 0.173 0.827 31 H 0.122 0.878 32 H 0.051 0.949 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.076 0.924 36 H 0.089 0.911 37 H 0.051 0.949 38 H 0.096 0.904 39 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.871 -18.279 -2.618 18.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.074 4.074 3 C -0.223 4.223 4 C 0.092 3.908 5 H 0.032 0.968 6 C -0.170 4.170 7 C -0.552 4.552 8 H 0.060 0.940 9 C -0.180 4.180 10 N -0.557 5.557 11 Si 0.770 3.230 12 H -0.201 1.201 13 H -0.209 1.209 14 H -0.200 1.200 15 C -0.147 4.147 16 N -0.142 5.142 17 N -0.151 5.151 18 C 0.046 3.954 19 C -0.170 4.170 20 C -0.149 4.149 21 C -0.155 4.155 22 C -0.167 4.167 23 H 0.097 0.903 24 H 0.112 0.888 25 H 0.092 0.908 26 H 0.050 0.950 27 H 0.043 0.957 28 H 0.058 0.942 29 H 0.069 0.931 30 H 0.190 0.810 31 H 0.140 0.860 32 H 0.070 0.930 33 H 0.098 0.902 34 H 0.111 0.889 35 H 0.094 0.906 36 H 0.108 0.892 37 H 0.070 0.930 38 H 0.114 0.886 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.296 -19.316 -2.643 19.498 hybrid contribution 0.170 2.032 0.750 2.172 sum -0.126 -17.284 -1.893 17.388 Atomic orbital electron populations 1.20390 0.85965 1.03921 1.03420 1.21191 0.95649 0.86989 1.03549 1.20437 0.92643 0.96713 1.12485 1.17006 0.94798 0.85912 0.93108 0.96771 1.21537 0.98565 1.00223 0.96693 1.21363 1.27191 0.98224 1.08432 0.93964 1.25602 0.95223 0.98661 0.98513 1.70060 1.28366 1.14435 1.42853 0.85792 0.78769 0.78501 0.79909 1.20055 1.20921 1.20022 1.23671 0.98353 0.91855 1.00806 1.77032 0.98402 1.12385 1.26414 1.48763 1.02902 1.05772 1.57617 1.22342 1.00169 0.75481 0.97438 1.22724 1.00947 0.96739 0.96630 1.22445 1.02246 0.94687 0.95477 1.22302 0.98561 0.97604 0.97026 1.22496 1.00649 0.97560 0.95967 0.90349 0.88844 0.90772 0.94961 0.95707 0.94248 0.93073 0.80957 0.86043 0.92974 0.90150 0.88882 0.90557 0.89238 0.93041 0.88552 0.93365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.40 9.59 71.24 0.68 -1.72 16 2 C 0.05 2.02 6.93 41.40 0.29 2.31 16 3 C -0.21 -9.63 4.75 -20.14 -0.10 -9.73 16 4 C 0.11 5.74 2.47 -12.29 -0.03 5.71 16 5 H 0.01 0.79 6.73 -2.39 -0.02 0.77 16 6 C -0.11 -5.53 8.99 71.98 0.65 -4.88 16 7 C -0.51 -28.95 8.34 25.60 0.21 -28.73 16 8 H 0.04 2.42 7.70 -2.91 -0.02 2.40 16 9 C 0.02 1.04 5.17 84.65 0.44 1.48 16 10 N -0.92 -53.41 12.16 21.45 0.26 -53.15 16 11 Si 0.94 44.52 29.55 68.60 2.03 46.54 16 12 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 13 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 14 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 15 C 0.04 1.63 11.41 85.24 0.97 2.60 16 16 N -0.32 -12.86 12.03 -57.02 -0.69 -13.54 16 17 N -0.37 -12.76 3.20 -310.88 -1.00 -13.76 16 18 C 0.15 3.61 3.69 45.72 0.17 3.77 16 19 C -0.13 -2.98 6.51 31.67 0.21 -2.77 16 20 C -0.11 -1.76 6.91 31.89 0.22 -1.54 16 21 C -0.12 -2.08 6.83 31.67 0.22 -1.87 16 22 C -0.13 -2.75 6.55 31.32 0.21 -2.54 16 23 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 24 H 0.09 2.08 7.13 -2.39 -0.02 2.07 16 25 H 0.07 2.47 7.13 -2.39 -0.02 2.45 16 26 H 0.03 1.50 7.93 -2.39 -0.02 1.48 16 27 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.04 2.09 6.84 -2.39 -0.02 2.08 16 29 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 30 H 0.17 7.19 8.06 -2.91 -0.02 7.17 16 31 H 0.12 2.38 6.73 -2.39 -0.02 2.37 16 32 H 0.05 1.52 7.69 -2.39 -0.02 1.50 16 33 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 34 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.05 1.33 7.86 -2.39 -0.02 1.31 16 Total: -1.00 -65.89 313.65 5.75 -60.14 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: 1.01 Total: 11.69 kcal Atomic # 6 Polarization: -42.05 SS G_CDS: 4.13 Total: -37.92 kcal Atomic # 7 Polarization: -79.03 SS G_CDS: -1.42 Total: -80.45 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.54 kcal Total: -65.89 5.75 -60.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259895167.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.903 kcal (2) G-P(sol) polarization free energy of solvation -65.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds