Wall clock time and date at job start Mon Mar 30 2020 06:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47404 * 2 1 4 4 C 1.53000 * 109.46858 * 239.99659 * 2 1 3 5 5 C 1.50703 * 109.46879 * 119.99987 * 2 1 3 6 6 N 1.35196 * 126.19477 * 354.58875 * 5 2 1 7 7 H 0.97002 * 125.99953 * 0.06248 * 6 5 2 8 8 N 1.40309 * 107.99531 * 179.97438 * 6 5 2 9 9 C 1.30126 * 108.12278 * 0.29323 * 8 6 5 10 10 C 1.34570 * 126.18682 * 174.90173 * 5 2 1 11 11 C 1.50887 * 128.33011 * 0.12054 * 10 5 2 12 12 C 1.53388 * 108.19254 * 163.29582 * 11 10 5 13 13 C 1.53024 * 109.72436 * 50.54329 * 12 11 10 14 14 C 1.50951 * 128.29122 * 179.97438 * 9 8 6 15 15 H 1.09000 * 109.71532 * 282.93186 * 14 9 8 16 16 C 1.50708 * 109.74742 * 43.55094 * 14 9 8 17 17 H 1.08001 * 119.99853 * 118.77456 * 16 14 9 18 18 C 1.37879 * 119.99923 * 298.77225 * 16 14 9 19 19 N 1.31516 * 119.99975 * 359.97438 * 18 16 14 20 20 Si 1.86798 * 119.99932 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47590 * 89.99431 * 20 18 16 22 22 H 1.48503 * 109.47042 * 210.00107 * 20 18 16 23 23 H 1.48500 * 109.47001 * 329.99498 * 20 18 16 24 24 H 1.09006 * 109.46649 * 300.00377 * 1 2 3 25 25 H 1.08996 * 109.47075 * 59.99655 * 1 2 3 26 26 H 1.09003 * 109.47332 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47258 * 185.22517 * 3 2 1 28 28 H 1.09002 * 109.46428 * 305.22321 * 3 2 1 29 29 H 1.09001 * 109.47010 * 65.22037 * 3 2 1 30 30 H 1.09000 * 109.47158 * 300.00429 * 4 2 1 31 31 H 1.08996 * 109.47147 * 60.00145 * 4 2 1 32 32 H 1.09002 * 109.47015 * 179.97438 * 4 2 1 33 33 H 1.09004 * 109.71261 * 282.97063 * 11 10 5 34 34 H 1.08997 * 109.71708 * 43.61821 * 11 10 5 35 35 H 1.08999 * 109.42583 * 170.61935 * 12 11 10 36 36 H 1.08993 * 109.42935 * 290.46184 * 12 11 10 37 37 H 1.09001 * 109.42361 * 48.36669 * 13 12 11 38 38 H 1.08999 * 109.42304 * 168.24755 * 13 12 11 39 39 H 0.96998 * 119.99924 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2305 6 7 1.2743 -1.1787 2.2473 7 1 0.3085 -1.1174 2.3137 8 7 2.1298 -1.7706 3.1888 9 6 3.3512 -1.6550 2.7549 10 6 3.3171 -0.9883 1.5187 11 6 4.5486 -0.6668 0.7084 12 6 5.7723 -0.8001 1.6235 13 6 5.7321 -2.1481 2.3465 14 6 4.6253 -2.1318 3.4091 15 1 4.8992 -1.4543 4.2179 16 6 4.4276 -3.5223 3.9556 17 1 5.0303 -4.3386 3.5856 18 6 3.4775 -3.7522 4.9279 19 7 2.7440 -2.7581 5.3788 20 14 3.2330 -5.4756 5.6058 21 1 4.1222 -5.6774 6.7779 22 1 1.8180 -5.6475 6.0224 23 1 3.5643 -6.4721 4.5558 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 3.1260 1.4439 -0.0936 28 1 1.6023 1.9825 -0.8396 29 1 1.7551 1.9286 0.9331 30 1 1.6765 -1.7490 -1.2492 31 1 1.6766 -0.2076 -2.1392 32 1 3.1300 -0.7210 -1.2495 33 1 4.6338 -1.3655 -0.1240 34 1 4.4828 0.3527 0.3283 35 1 6.6811 -0.7366 1.0250 36 1 5.7655 0.0055 2.3576 37 1 5.5328 -2.9406 1.6251 38 1 6.6928 -2.3299 2.8283 39 1 2.0759 -2.9198 6.0630 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259900665.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:17 Heat of formation + Delta-G solvation = 52.355439 kcal Electronic energy + Delta-G solvation = -19138.765505 eV Core-core repulsion = 16468.044460 eV Total energy + Delta-G solvation = -2670.721045 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.53982 -36.52527 -35.52102 -32.75803 -29.98762 -29.62501 -27.43068 -27.10928 -26.90065 -24.75611 -22.62012 -20.95071 -20.48994 -18.27818 -17.49986 -16.29324 -15.95223 -14.51868 -14.41515 -14.20653 -13.91946 -13.59238 -13.11845 -12.91268 -12.72172 -12.25599 -12.01948 -12.00181 -11.69552 -11.57753 -11.07476 -10.96669 -10.90092 -10.80190 -10.75540 -10.63087 -10.36905 -10.01946 -9.64499 -9.39366 -9.33615 -8.51263 -8.20423 -7.71722 -7.20338 -5.79258 -3.86075 3.04557 3.40032 3.46301 3.49579 4.02647 4.24102 4.59743 4.88466 4.98813 5.10430 5.50124 5.56533 5.59755 5.65551 5.71069 5.78267 5.82314 5.85079 5.92587 6.04233 6.10040 6.20157 6.24232 6.38970 6.47699 6.48771 6.57895 6.60971 6.77029 6.86505 6.93553 7.13058 7.23508 7.43546 7.82126 7.99543 8.16992 8.48355 8.50029 9.08753 9.37810 9.76592 11.25202 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.026375 B = 0.008086 C = 0.006794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.345667 B = 3461.879191 C = 4120.207917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.002 3.998 3 C -0.137 4.137 4 C -0.138 4.138 5 C 0.065 3.935 6 N -0.518 5.518 7 H 0.417 0.583 8 N -0.201 5.201 9 C 0.118 3.882 10 C -0.246 4.246 11 C -0.031 4.031 12 C -0.117 4.117 13 C -0.103 4.103 14 C 0.118 3.882 15 H 0.041 0.959 16 C -0.530 4.530 17 H 0.056 0.944 18 C 0.072 3.928 19 N -0.840 5.840 20 Si 0.885 3.115 21 H -0.282 1.282 22 H -0.289 1.289 23 H -0.277 1.277 24 H 0.054 0.946 25 H 0.060 0.940 26 H 0.056 0.944 27 H 0.064 0.936 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.067 0.933 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.048 0.952 36 H 0.056 0.944 37 H 0.052 0.948 38 H 0.052 0.948 39 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.679 7.220 -11.603 13.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.000 4.000 3 C -0.195 4.195 4 C -0.196 4.196 5 C -0.061 4.061 6 N -0.224 5.224 7 H 0.258 0.742 8 N -0.018 5.018 9 C -0.054 4.054 10 C -0.259 4.259 11 C -0.069 4.069 12 C -0.155 4.155 13 C -0.142 4.142 14 C 0.098 3.902 15 H 0.058 0.942 16 C -0.569 4.569 17 H 0.074 0.926 18 C -0.134 4.134 19 N -0.475 5.475 20 Si 0.713 3.287 21 H -0.209 1.209 22 H -0.215 1.215 23 H -0.202 1.202 24 H 0.073 0.927 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -2.593 6.837 -10.504 12.798 hybrid contribution -0.490 -0.671 -0.172 0.848 sum -3.083 6.166 -10.676 12.708 Atomic orbital electron populations 1.21925 0.94892 1.01880 1.01877 1.19050 0.94677 0.94726 0.91574 1.21869 1.01909 0.94323 1.01349 1.21892 1.02283 1.00016 0.95403 1.20115 0.92052 1.01922 0.92059 1.47258 1.08982 1.49177 1.16986 0.74199 1.78207 1.01037 1.15175 1.07371 1.23257 0.95305 0.94516 0.92302 1.19776 0.92932 1.12677 1.00478 1.19971 0.91778 0.99064 0.96106 1.21608 0.96264 0.99294 0.98340 1.21606 0.99191 0.95158 0.98215 1.17408 0.84648 0.96655 0.91539 0.94167 1.20917 1.20944 0.93232 1.21774 0.92594 1.24935 0.95676 0.96212 0.96597 1.69963 1.20656 1.30175 1.26695 0.86730 0.77050 0.85751 0.79178 1.20868 1.21539 1.20190 0.92680 0.92089 0.92521 0.91687 0.92717 0.92720 0.92692 0.92787 0.91438 0.92685 0.92765 0.93366 0.92533 0.92934 0.92954 0.93317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 7.59 37.16 0.28 -1.48 16 2 C 0.00 0.02 0.82 -155.66 -0.13 -0.10 16 3 C -0.14 -1.71 8.34 37.16 0.31 -1.40 16 4 C -0.14 -1.75 8.28 37.16 0.31 -1.44 16 5 C 0.07 1.22 5.58 -82.41 -0.46 0.76 16 6 N -0.52 -10.83 7.12 33.39 0.24 -10.59 16 7 H 0.42 7.45 7.99 -182.44 -1.46 5.99 16 8 N -0.20 -5.27 9.85 33.75 0.33 -4.94 16 9 C 0.12 2.98 6.25 -82.34 -0.51 2.47 16 10 C -0.25 -5.15 5.65 -104.98 -0.59 -5.74 16 11 C -0.03 -0.54 4.58 -27.59 -0.13 -0.66 16 12 C -0.12 -2.08 5.86 -26.52 -0.16 -2.24 16 13 C -0.10 -2.18 5.12 -26.49 -0.14 -2.32 16 14 C 0.12 3.04 2.46 -92.57 -0.23 2.82 16 15 H 0.04 1.13 8.14 -51.93 -0.42 0.71 16 16 C -0.53 -15.03 8.54 -34.44 -0.29 -15.32 16 17 H 0.06 1.56 7.75 -52.49 -0.41 1.16 16 18 C 0.07 2.05 5.12 -17.82 -0.09 1.96 16 19 N -0.84 -24.83 10.70 55.43 0.59 -24.24 16 20 Si 0.88 22.14 29.54 -169.99 -5.02 17.12 16 21 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 23 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 24 H 0.05 0.65 7.92 -51.93 -0.41 0.24 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.06 0.82 5.84 -51.93 -0.30 0.52 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.87 5.63 -51.93 -0.29 0.58 16 33 H 0.05 0.90 7.26 -51.93 -0.38 0.52 16 34 H 0.05 0.82 5.88 -51.93 -0.31 0.51 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.06 1.02 8.10 -51.93 -0.42 0.60 16 37 H 0.05 1.12 8.08 -51.93 -0.42 0.70 16 38 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 39 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 298.77 15.07 4.50 4.50 Total: -1.00 -31.45 298.77 -8.52 -39.97 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -7.33 Total: 0.89 kcal Atomic # 6 Polarization: -20.88 SS G_CDS: -1.83 Total: -22.71 kcal Atomic # 7 Polarization: -40.93 SS G_CDS: 1.16 Total: -39.77 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -31.45 -8.52 -39.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259900665.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.322 kcal (2) G-P(sol) polarization free energy of solvation -31.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds