Wall clock time and date at job start Mon Mar 30 2020 06:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47404 * 2 1 4 4 C 1.53000 * 109.46858 * 239.99659 * 2 1 3 5 5 C 1.50703 * 109.46879 * 119.99987 * 2 1 3 6 6 N 1.35196 * 126.19477 * 354.58875 * 5 2 1 7 7 H 0.97002 * 125.99953 * 0.06248 * 6 5 2 8 8 N 1.40309 * 107.99531 * 179.97438 * 6 5 2 9 9 C 1.30126 * 108.12278 * 0.29323 * 8 6 5 10 10 C 1.34570 * 126.18682 * 174.90173 * 5 2 1 11 11 C 1.50887 * 128.33011 * 0.12054 * 10 5 2 12 12 C 1.53388 * 108.19254 * 163.29582 * 11 10 5 13 13 C 1.53024 * 109.72436 * 50.54329 * 12 11 10 14 14 C 1.50951 * 128.29122 * 179.97438 * 9 8 6 15 15 H 1.09000 * 109.71532 * 282.93186 * 14 9 8 16 16 C 1.50708 * 109.74742 * 43.55094 * 14 9 8 17 17 H 1.08001 * 119.99853 * 118.77456 * 16 14 9 18 18 C 1.37879 * 119.99923 * 298.77225 * 16 14 9 19 19 N 1.31516 * 119.99975 * 359.97438 * 18 16 14 20 20 Si 1.86798 * 119.99932 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47590 * 89.99431 * 20 18 16 22 22 H 1.48503 * 109.47042 * 210.00107 * 20 18 16 23 23 H 1.48500 * 109.47001 * 329.99498 * 20 18 16 24 24 H 1.09006 * 109.46649 * 300.00377 * 1 2 3 25 25 H 1.08996 * 109.47075 * 59.99655 * 1 2 3 26 26 H 1.09003 * 109.47332 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47258 * 185.22517 * 3 2 1 28 28 H 1.09002 * 109.46428 * 305.22321 * 3 2 1 29 29 H 1.09001 * 109.47010 * 65.22037 * 3 2 1 30 30 H 1.09000 * 109.47158 * 300.00429 * 4 2 1 31 31 H 1.08996 * 109.47147 * 60.00145 * 4 2 1 32 32 H 1.09002 * 109.47015 * 179.97438 * 4 2 1 33 33 H 1.09004 * 109.71261 * 282.97063 * 11 10 5 34 34 H 1.08997 * 109.71708 * 43.61821 * 11 10 5 35 35 H 1.08999 * 109.42583 * 170.61935 * 12 11 10 36 36 H 1.08993 * 109.42935 * 290.46184 * 12 11 10 37 37 H 1.09001 * 109.42361 * 48.36669 * 13 12 11 38 38 H 1.08999 * 109.42304 * 168.24755 * 13 12 11 39 39 H 0.96998 * 119.99924 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2305 6 7 1.2743 -1.1787 2.2473 7 1 0.3085 -1.1174 2.3137 8 7 2.1298 -1.7706 3.1888 9 6 3.3512 -1.6550 2.7549 10 6 3.3171 -0.9883 1.5187 11 6 4.5486 -0.6668 0.7084 12 6 5.7723 -0.8001 1.6235 13 6 5.7321 -2.1481 2.3465 14 6 4.6253 -2.1318 3.4091 15 1 4.8992 -1.4543 4.2179 16 6 4.4276 -3.5223 3.9556 17 1 5.0303 -4.3386 3.5856 18 6 3.4775 -3.7522 4.9279 19 7 2.7440 -2.7581 5.3788 20 14 3.2330 -5.4756 5.6058 21 1 4.1222 -5.6774 6.7779 22 1 1.8180 -5.6475 6.0224 23 1 3.5643 -6.4721 4.5558 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 3.1260 1.4439 -0.0936 28 1 1.6023 1.9825 -0.8396 29 1 1.7551 1.9286 0.9331 30 1 1.6765 -1.7490 -1.2492 31 1 1.6766 -0.2076 -2.1392 32 1 3.1300 -0.7210 -1.2495 33 1 4.6338 -1.3655 -0.1240 34 1 4.4828 0.3527 0.3283 35 1 6.6811 -0.7366 1.0250 36 1 5.7655 0.0055 2.3576 37 1 5.5328 -2.9406 1.6251 38 1 6.6928 -2.3299 2.8283 39 1 2.0759 -2.9198 6.0630 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259900665.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:17 Heat of formation + Delta-G solvation = 33.569931 kcal Electronic energy + Delta-G solvation = -19139.580106 eV Core-core repulsion = 16468.044460 eV Total energy + Delta-G solvation = -2671.535646 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.14516 -37.86147 -37.05327 -34.73683 -31.77579 -31.25444 -29.11797 -28.06188 -27.93078 -26.63176 -24.37968 -22.45185 -22.03906 -19.85480 -19.13352 -18.14083 -17.64198 -16.49537 -15.85074 -15.53591 -15.18630 -14.85903 -14.54572 -14.49944 -14.36258 -13.87391 -13.43556 -13.05676 -13.01144 -12.91461 -12.72116 -12.65954 -12.42915 -12.27393 -12.09849 -11.88981 -11.79534 -11.68606 -11.38979 -11.20632 -11.03866 -10.38175 -10.25754 -9.56112 -8.79467 -7.96428 -6.09676 1.38114 1.39601 1.48413 1.49983 2.38040 2.48396 2.53903 3.33057 3.72621 3.95715 4.10221 4.11829 4.34063 4.37758 4.44233 4.70189 4.74602 4.81488 4.92168 4.93515 4.95865 5.00610 5.02499 5.05711 5.14769 5.19124 5.25178 5.29327 5.33295 5.46445 5.52291 5.53605 5.65094 5.73631 5.82954 5.93936 6.30110 6.43178 6.89669 6.97806 7.54013 7.61151 9.06275 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.026375 B = 0.008086 C = 0.006794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.345667 B = 3461.879191 C = 4120.207917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.002 3.998 3 C -0.134 4.134 4 C -0.136 4.136 5 C 0.083 3.917 6 N -0.516 5.516 7 H 0.427 0.573 8 N -0.261 5.261 9 C 0.089 3.911 10 C -0.267 4.267 11 C -0.026 4.026 12 C -0.112 4.112 13 C -0.096 4.096 14 C 0.110 3.890 15 H 0.002 0.998 16 C -0.551 4.551 17 H 0.051 0.949 18 C 0.024 3.976 19 N -0.863 5.863 20 Si 0.945 3.055 21 H -0.272 1.272 22 H -0.291 1.291 23 H -0.274 1.274 24 H 0.051 0.949 25 H 0.091 0.909 26 H 0.049 0.951 27 H 0.064 0.936 28 H 0.087 0.913 29 H 0.040 0.960 30 H 0.040 0.960 31 H 0.086 0.914 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.046 0.954 37 H 0.047 0.953 38 H 0.057 0.943 39 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.792 8.142 -14.379 16.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.000 4.000 3 C -0.191 4.191 4 C -0.194 4.194 5 C -0.044 4.044 6 N -0.224 5.224 7 H 0.270 0.730 8 N -0.079 5.079 9 C -0.082 4.082 10 C -0.279 4.279 11 C -0.063 4.063 12 C -0.149 4.149 13 C -0.134 4.134 14 C 0.090 3.910 15 H 0.020 0.980 16 C -0.589 4.589 17 H 0.069 0.931 18 C -0.179 4.179 19 N -0.499 5.499 20 Si 0.771 3.229 21 H -0.198 1.198 22 H -0.217 1.217 23 H -0.198 1.198 24 H 0.070 0.930 25 H 0.109 0.891 26 H 0.068 0.932 27 H 0.083 0.917 28 H 0.106 0.894 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.105 0.895 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.101 0.899 35 H 0.105 0.895 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.076 0.924 39 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -2.692 7.759 -13.285 15.618 hybrid contribution -0.507 -0.921 0.685 1.255 sum -3.199 6.838 -12.600 14.688 Atomic orbital electron populations 1.21933 0.93319 1.01922 1.03263 1.19286 0.96052 0.95220 0.89486 1.21861 1.02091 0.93102 1.02077 1.21893 1.02224 0.99465 0.95788 1.20941 0.91192 0.99773 0.92506 1.47143 1.09426 1.48844 1.16966 0.72979 1.78027 1.02273 1.17549 1.10051 1.23253 0.94724 0.95855 0.94351 1.20171 0.95269 1.12868 0.99542 1.20052 0.89594 1.01032 0.95670 1.21572 0.98446 0.96481 0.98423 1.21499 0.97519 0.97363 0.97068 1.17370 0.87099 0.94506 0.92074 0.98046 1.21268 1.20937 0.94473 1.22209 0.93078 1.25654 0.95549 0.99684 0.97031 1.70145 1.20941 1.31844 1.26951 0.85780 0.76817 0.81553 0.78729 1.19783 1.21671 1.19841 0.92998 0.89053 0.93213 0.91692 0.89408 0.94101 0.94059 0.89473 0.91588 0.91334 0.89899 0.89502 0.93479 0.93463 0.92436 0.93859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.04 7.59 71.98 0.55 -2.49 16 2 C 0.00 0.04 0.82 -52.93 -0.04 0.00 16 3 C -0.13 -2.82 8.34 71.98 0.60 -2.22 16 4 C -0.14 -2.93 8.28 71.98 0.60 -2.33 16 5 C 0.08 3.03 5.58 41.20 0.23 3.26 16 6 N -0.52 -21.83 7.12 -48.28 -0.34 -22.17 16 7 H 0.43 15.43 7.99 -213.18 -1.70 13.73 16 8 N -0.26 -14.18 9.85 -47.13 -0.46 -14.65 16 9 C 0.09 4.63 6.25 43.44 0.27 4.91 16 10 C -0.27 -11.01 5.65 -20.10 -0.11 -11.13 16 11 C -0.03 -0.82 4.58 30.04 0.14 -0.69 16 12 C -0.11 -3.77 5.86 30.73 0.18 -3.59 16 13 C -0.10 -4.09 5.12 30.75 0.16 -3.93 16 14 C 0.11 5.92 2.46 -12.06 -0.03 5.89 16 15 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 16 C -0.55 -32.40 8.54 25.60 0.22 -32.18 16 17 H 0.05 2.95 7.75 -2.91 -0.02 2.93 16 18 C 0.02 1.43 5.12 84.66 0.43 1.86 16 19 N -0.86 -53.25 10.70 21.45 0.23 -53.02 16 20 Si 0.94 46.72 29.54 68.60 2.03 48.75 16 21 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 22 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 23 H -0.27 -13.24 7.11 99.48 0.71 -12.54 16 24 H 0.05 1.10 7.92 -2.38 -0.02 1.08 16 25 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.06 1.37 5.84 -2.39 -0.01 1.36 16 28 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.07 1.45 5.63 -2.39 -0.01 1.43 16 33 H 0.07 2.03 7.26 -2.38 -0.02 2.01 16 34 H 0.08 2.19 5.88 -2.39 -0.01 2.18 16 35 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.05 1.67 8.10 -2.39 -0.02 1.65 16 37 H 0.05 2.02 8.08 -2.39 -0.02 2.00 16 38 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 39 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -71.84 298.77 3.97 -67.87 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: -0.67 Total: 15.87 kcal Atomic # 6 Polarization: -45.83 SS G_CDS: 3.18 Total: -42.65 kcal Atomic # 7 Polarization: -89.26 SS G_CDS: -0.58 Total: -89.84 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.75 kcal Total: -71.84 3.97 -67.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259900665.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.440 kcal (2) G-P(sol) polarization free energy of solvation -71.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds