Wall clock time and date at job start Mon Mar 30 2020 06:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47023 * 2 1 4 4 C 1.50706 * 109.46535 * 119.99505 * 2 1 3 5 5 N 1.30787 * 125.72699 * 278.35451 * 4 2 1 6 6 C 1.34422 * 109.32063 * 180.02562 * 5 4 2 7 7 C 1.33860 * 107.79805 * 0.02562 * 6 5 4 8 8 N 1.34408 * 125.71853 * 98.38102 * 4 2 1 9 9 C 1.46467 * 128.44681 * 359.87474 * 8 4 2 10 10 H 1.08996 * 109.60264 * 77.51628 * 9 8 4 11 11 C 1.53004 * 109.59968 * 317.19911 * 9 8 4 12 12 C 1.50695 * 109.47060 * 176.45939 * 11 9 8 13 13 H 1.08003 * 120.00311 * 0.02562 * 12 11 9 14 14 C 1.37878 * 119.99826 * 179.97438 * 12 11 9 15 15 N 1.31513 * 119.99909 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00184 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47050 * 89.99640 * 16 14 12 18 18 H 1.48501 * 109.47176 * 209.99986 * 16 14 12 19 19 H 1.48499 * 109.46953 * 330.00009 * 16 14 12 20 20 C 1.53286 * 108.82891 * 197.35624 * 9 8 4 21 21 C 1.53459 * 109.53074 * 309.30971 * 20 9 8 22 22 C 1.50717 * 128.67757 * 179.87185 * 7 6 5 23 23 H 1.08998 * 109.47527 * 300.00471 * 1 2 3 24 24 H 1.09002 * 109.47192 * 59.99994 * 1 2 3 25 25 H 1.08997 * 109.47483 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47136 * 239.99208 * 2 1 3 27 27 H 1.09006 * 109.46945 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47169 * 299.99252 * 3 2 1 29 29 H 1.09000 * 109.47759 * 60.00070 * 3 2 1 30 30 H 1.08005 * 126.09806 * 180.02562 * 6 5 4 31 31 H 1.09006 * 109.46542 * 296.45652 * 11 9 8 32 32 H 1.08996 * 109.46879 * 56.45627 * 11 9 8 33 33 H 0.96999 * 119.99924 * 179.97438 * 15 14 12 34 34 H 1.09004 * 109.43176 * 69.24495 * 20 9 8 35 35 H 1.09000 * 109.43309 * 189.09702 * 20 9 8 36 36 H 1.08998 * 109.47612 * 309.84762 * 21 20 9 37 37 H 1.09000 * 109.47047 * 189.80799 * 21 20 9 38 38 H 1.09002 * 109.74322 * 315.48613 * 22 7 6 39 39 H 1.08994 * 109.74208 * 76.15756 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0322 -0.7104 1.2306 5 7 2.1412 -0.1862 2.4239 6 6 2.6235 -1.1100 3.2730 7 6 2.8185 -2.2394 2.5814 8 7 2.4436 -1.9887 1.2857 9 6 2.5017 -2.9742 0.2037 10 1 3.3712 -2.7777 -0.4235 11 6 1.2290 -2.8849 -0.6407 12 6 1.3295 -3.8386 -1.8031 13 1 2.2126 -4.4478 -1.9271 14 6 0.2935 -3.9342 -2.7080 15 7 -0.7825 -3.1935 -2.5562 16 14 0.4177 -5.1169 -4.1486 17 1 -0.1345 -6.4376 -3.7538 18 1 -0.3553 -4.5805 -5.2975 19 1 1.8418 -5.2727 -4.5397 20 6 2.6155 -4.3749 0.8159 21 6 3.7541 -4.3943 1.8446 22 6 3.3465 -3.5638 3.0699 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 2.8187 -0.9666 4.3255 31 1 0.3671 -3.1488 -0.0277 32 1 1.1114 -1.8678 -1.0143 33 1 -1.5112 -3.2605 -3.1930 34 1 1.6779 -4.6326 1.3085 35 1 2.8213 -5.0994 0.0280 36 1 4.6537 -3.9699 1.3989 37 1 3.9497 -5.4220 2.1506 38 1 4.2144 -3.4011 3.7089 39 1 2.5702 -4.0860 3.6291 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259911331.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:35 Heat of formation + Delta-G solvation = 31.543629 kcal Electronic energy + Delta-G solvation = -19043.056189 eV Core-core repulsion = 16371.432676 eV Total energy + Delta-G solvation = -2671.623513 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.87052 -36.56160 -35.30581 -33.19954 -32.23250 -30.11587 -28.32593 -26.65395 -26.14407 -24.15212 -22.24137 -21.77281 -21.01325 -19.13772 -18.21860 -16.73420 -15.96356 -15.10648 -14.50559 -14.28978 -14.05668 -13.77037 -13.49355 -13.35001 -13.05293 -12.60592 -12.51041 -12.13552 -11.75790 -11.63327 -11.15139 -10.98857 -10.89751 -10.82474 -10.67430 -10.65268 -10.54006 -10.36834 -10.09458 -9.65920 -9.39977 -9.15309 -8.72502 -8.48134 -7.62302 -6.16858 -4.20752 2.66864 3.21714 3.29112 3.30525 3.49911 3.68415 4.32788 4.93175 5.01426 5.08830 5.14110 5.21782 5.37241 5.44836 5.64330 5.72823 5.77919 5.82099 5.94160 5.99782 6.03614 6.14304 6.16731 6.28933 6.35560 6.43706 6.44717 6.48366 6.51633 6.69104 6.76433 6.95820 7.11243 7.33219 7.44272 7.50016 7.73962 7.91557 8.17634 8.71864 8.82514 9.43591 10.93887 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.020326 B = 0.008617 C = 0.006455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.198192 B = 3248.751047 C = 4336.546441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.013 4.013 3 C -0.132 4.132 4 C 0.227 3.773 5 N -0.504 5.504 6 C -0.038 4.038 7 C -0.037 4.037 8 N -0.434 5.434 9 C 0.130 3.870 10 H 0.077 0.923 11 C 0.005 3.995 12 C -0.525 4.525 13 H 0.058 0.942 14 C 0.064 3.936 15 N -0.886 5.886 16 Si 0.893 3.107 17 H -0.280 1.280 18 H -0.285 1.285 19 H -0.273 1.273 20 C -0.115 4.115 21 C -0.127 4.127 22 C -0.041 4.041 23 H 0.050 0.950 24 H 0.059 0.941 25 H 0.073 0.927 26 H 0.096 0.904 27 H 0.048 0.952 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.159 0.841 31 H 0.023 0.977 32 H 0.050 0.950 33 H 0.263 0.737 34 H 0.068 0.932 35 H 0.089 0.911 36 H 0.061 0.939 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.430 1.312 6.665 9.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.033 4.033 3 C -0.190 4.190 4 C -0.036 4.036 5 N -0.223 5.223 6 C -0.186 4.186 7 C -0.153 4.153 8 N -0.114 5.114 9 C 0.029 3.971 10 H 0.095 0.905 11 C -0.032 4.032 12 C -0.563 4.563 13 H 0.076 0.924 14 C -0.139 4.139 15 N -0.524 5.524 16 Si 0.721 3.279 17 H -0.206 1.206 18 H -0.211 1.211 19 H -0.198 1.198 20 C -0.153 4.153 21 C -0.165 4.165 22 C -0.079 4.079 23 H 0.069 0.931 24 H 0.078 0.922 25 H 0.092 0.908 26 H 0.114 0.886 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.176 0.824 31 H 0.042 0.958 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.107 0.893 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.095 0.905 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 6.056 2.055 6.648 9.225 hybrid contribution 0.181 -1.599 -0.941 1.864 sum 6.237 0.456 5.707 8.466 Atomic orbital electron populations 1.21847 0.93071 1.03718 1.01148 1.19749 0.96779 0.95040 0.91728 1.21697 1.00462 0.94993 1.01895 1.22940 1.02259 0.82391 0.96013 1.70327 1.20865 1.31661 0.99459 1.21651 1.07703 0.89992 0.99284 1.21049 1.10015 0.98668 0.85609 1.45726 1.45785 1.11001 1.08906 1.22024 1.02982 0.86075 0.86062 0.90471 1.19859 0.89636 0.99815 0.93869 1.20983 1.03176 1.23086 1.09098 0.92373 1.24951 0.95248 0.95817 0.97897 1.69945 1.06462 1.39286 1.36673 0.86575 0.78187 0.81094 0.82068 1.20628 1.21093 1.19833 1.21869 0.98533 0.96354 0.98528 1.21795 0.98904 0.99828 0.95958 1.20136 1.00081 0.90345 0.97344 0.93084 0.92160 0.90807 0.88639 0.93282 0.92483 0.91745 0.82361 0.95848 0.93260 0.92732 0.91358 0.89273 0.92033 0.91376 0.90487 0.90701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 8.61 37.16 0.32 -2.30 16 2 C -0.01 -0.24 2.36 -91.77 -0.22 -0.46 16 3 C -0.13 -2.09 8.99 37.16 0.33 -1.75 16 4 C 0.23 4.54 6.39 -155.75 -1.00 3.55 16 5 N -0.50 -10.09 10.88 -11.02 -0.12 -10.21 16 6 C -0.04 -0.68 11.84 -17.95 -0.21 -0.89 16 7 C -0.04 -0.66 6.57 -81.73 -0.54 -1.20 16 8 N -0.43 -8.53 2.98 -102.40 -0.31 -8.83 16 9 C 0.13 2.59 2.86 -67.80 -0.19 2.40 16 10 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 11 C 0.01 0.12 3.35 -27.88 -0.09 0.03 16 12 C -0.52 -13.42 8.52 -34.44 -0.29 -13.72 16 13 H 0.06 1.43 7.03 -52.48 -0.37 1.06 16 14 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 15 N -0.89 -24.61 13.29 55.43 0.74 -23.87 16 16 Si 0.89 20.35 29.54 -169.99 -5.02 15.33 16 17 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 18 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 20 C -0.12 -2.01 4.89 -26.35 -0.13 -2.14 16 21 C -0.13 -1.78 5.96 -26.21 -0.16 -1.94 16 22 C -0.04 -0.57 6.32 -27.60 -0.17 -0.74 16 23 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 24 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 25 H 0.07 1.60 6.40 -51.93 -0.33 1.27 16 26 H 0.10 1.89 5.94 -51.93 -0.31 1.58 16 27 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.06 1.02 8.04 -51.93 -0.42 0.61 16 30 H 0.16 2.35 8.06 -52.48 -0.42 1.93 16 31 H 0.02 0.62 7.91 -51.93 -0.41 0.21 16 32 H 0.05 1.20 3.42 -51.93 -0.18 1.02 16 33 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 34 H 0.07 1.27 8.09 -51.93 -0.42 0.85 16 35 H 0.09 1.56 7.21 -51.93 -0.37 1.19 16 36 H 0.06 0.86 8.12 -51.93 -0.42 0.44 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 303.79 15.07 4.58 4.58 Total: -1.00 -28.49 303.79 -8.75 -37.24 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -6.17 Total: 3.35 kcal Atomic # 6 Polarization: -15.14 SS G_CDS: -2.45 Total: -17.59 kcal Atomic # 7 Polarization: -43.23 SS G_CDS: 0.31 Total: -42.92 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -28.49 -8.75 -37.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259911331.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.788 kcal (2) G-P(sol) polarization free energy of solvation -28.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds