Wall clock time and date at job start Mon Mar 30 2020 06:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47023 * 2 1 4 4 C 1.50706 * 109.46535 * 119.99505 * 2 1 3 5 5 N 1.30787 * 125.72699 * 278.35451 * 4 2 1 6 6 C 1.34422 * 109.32063 * 180.02562 * 5 4 2 7 7 C 1.33860 * 107.79805 * 0.02562 * 6 5 4 8 8 N 1.34408 * 125.71853 * 98.38102 * 4 2 1 9 9 C 1.46467 * 128.44681 * 359.87474 * 8 4 2 10 10 H 1.08996 * 109.60264 * 77.51628 * 9 8 4 11 11 C 1.53004 * 109.59968 * 317.19911 * 9 8 4 12 12 C 1.50695 * 109.47060 * 176.45939 * 11 9 8 13 13 H 1.08003 * 120.00311 * 0.02562 * 12 11 9 14 14 C 1.37878 * 119.99826 * 179.97438 * 12 11 9 15 15 N 1.31513 * 119.99909 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00184 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47050 * 89.99640 * 16 14 12 18 18 H 1.48501 * 109.47176 * 209.99986 * 16 14 12 19 19 H 1.48499 * 109.46953 * 330.00009 * 16 14 12 20 20 C 1.53286 * 108.82891 * 197.35624 * 9 8 4 21 21 C 1.53459 * 109.53074 * 309.30971 * 20 9 8 22 22 C 1.50717 * 128.67757 * 179.87185 * 7 6 5 23 23 H 1.08998 * 109.47527 * 300.00471 * 1 2 3 24 24 H 1.09002 * 109.47192 * 59.99994 * 1 2 3 25 25 H 1.08997 * 109.47483 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47136 * 239.99208 * 2 1 3 27 27 H 1.09006 * 109.46945 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47169 * 299.99252 * 3 2 1 29 29 H 1.09000 * 109.47759 * 60.00070 * 3 2 1 30 30 H 1.08005 * 126.09806 * 180.02562 * 6 5 4 31 31 H 1.09006 * 109.46542 * 296.45652 * 11 9 8 32 32 H 1.08996 * 109.46879 * 56.45627 * 11 9 8 33 33 H 0.96999 * 119.99924 * 179.97438 * 15 14 12 34 34 H 1.09004 * 109.43176 * 69.24495 * 20 9 8 35 35 H 1.09000 * 109.43309 * 189.09702 * 20 9 8 36 36 H 1.08998 * 109.47612 * 309.84762 * 21 20 9 37 37 H 1.09000 * 109.47047 * 189.80799 * 21 20 9 38 38 H 1.09002 * 109.74322 * 315.48613 * 22 7 6 39 39 H 1.08994 * 109.74208 * 76.15756 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0322 -0.7104 1.2306 5 7 2.1412 -0.1862 2.4239 6 6 2.6235 -1.1100 3.2730 7 6 2.8185 -2.2394 2.5814 8 7 2.4436 -1.9887 1.2857 9 6 2.5017 -2.9742 0.2037 10 1 3.3712 -2.7777 -0.4235 11 6 1.2290 -2.8849 -0.6407 12 6 1.3295 -3.8386 -1.8031 13 1 2.2126 -4.4478 -1.9271 14 6 0.2935 -3.9342 -2.7080 15 7 -0.7825 -3.1935 -2.5562 16 14 0.4177 -5.1169 -4.1486 17 1 -0.1345 -6.4376 -3.7538 18 1 -0.3553 -4.5805 -5.2975 19 1 1.8418 -5.2727 -4.5397 20 6 2.6155 -4.3749 0.8159 21 6 3.7541 -4.3943 1.8446 22 6 3.3465 -3.5638 3.0699 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 2.8187 -0.9666 4.3255 31 1 0.3671 -3.1488 -0.0277 32 1 1.1114 -1.8678 -1.0143 33 1 -1.5112 -3.2605 -3.1930 34 1 1.6779 -4.6326 1.3085 35 1 2.8213 -5.0994 0.0280 36 1 4.6537 -3.9699 1.3989 37 1 3.9497 -5.4220 2.1506 38 1 4.2144 -3.4011 3.7089 39 1 2.5702 -4.0860 3.6291 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259911331.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:35 Heat of formation + Delta-G solvation = 17.144784 kcal Electronic energy + Delta-G solvation = -19043.680570 eV Core-core repulsion = 16371.432676 eV Total energy + Delta-G solvation = -2672.247893 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.32252 -38.02696 -36.79961 -34.94289 -33.78065 -31.70072 -29.91458 -28.04790 -27.70324 -25.87015 -23.71330 -23.15917 -22.64379 -20.53016 -19.71591 -18.57173 -17.59383 -16.75609 -16.23976 -15.73318 -15.35720 -15.17253 -14.92431 -14.72113 -14.47070 -14.14318 -14.08618 -13.79599 -13.31267 -13.02888 -12.83999 -12.69712 -12.48042 -12.39923 -12.16594 -12.09039 -11.83962 -11.82697 -11.76623 -11.35462 -11.10558 -10.77830 -10.50557 -10.27767 -9.02388 -8.20128 -6.30335 1.22655 1.41318 1.42415 1.52241 2.01740 2.22982 2.41972 3.14309 3.51282 3.70681 3.77051 3.89046 4.01584 4.04550 4.23199 4.31737 4.35657 4.53320 4.57115 4.64664 4.80101 4.81543 4.88447 4.94204 4.95730 5.01640 5.07351 5.11940 5.17003 5.29521 5.32531 5.40527 5.46834 5.51063 5.73976 5.75983 6.00223 6.11003 6.43460 6.81809 7.25101 7.37757 8.90977 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.020326 B = 0.008617 C = 0.006455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.198192 B = 3248.751047 C = 4336.546441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.012 4.012 3 C -0.122 4.122 4 C 0.202 3.798 5 N -0.519 5.519 6 C -0.052 4.052 7 C -0.040 4.040 8 N -0.445 5.445 9 C 0.136 3.864 10 H 0.077 0.923 11 C 0.016 3.984 12 C -0.534 4.534 13 H 0.067 0.933 14 C 0.010 3.990 15 N -0.921 5.921 16 Si 0.959 3.041 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.262 1.262 20 C -0.112 4.112 21 C -0.118 4.118 22 C -0.039 4.039 23 H 0.057 0.943 24 H 0.069 0.931 25 H 0.035 0.965 26 H 0.076 0.924 27 H 0.051 0.949 28 H 0.076 0.924 29 H 0.063 0.937 30 H 0.190 0.810 31 H -0.016 1.016 32 H 0.039 0.961 33 H 0.263 0.737 34 H 0.051 0.949 35 H 0.087 0.913 36 H 0.064 0.936 37 H 0.099 0.901 38 H 0.110 0.890 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.176 0.494 7.361 11.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.032 4.032 3 C -0.180 4.180 4 C -0.060 4.060 5 N -0.238 5.238 6 C -0.199 4.199 7 C -0.156 4.156 8 N -0.126 5.126 9 C 0.034 3.966 10 H 0.095 0.905 11 C -0.021 4.021 12 C -0.572 4.572 13 H 0.085 0.915 14 C -0.189 4.189 15 N -0.561 5.561 16 Si 0.784 3.216 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.186 1.186 20 C -0.150 4.150 21 C -0.155 4.155 22 C -0.077 4.077 23 H 0.076 0.924 24 H 0.088 0.912 25 H 0.054 0.946 26 H 0.094 0.906 27 H 0.070 0.930 28 H 0.095 0.905 29 H 0.082 0.918 30 H 0.207 0.793 31 H 0.002 0.998 32 H 0.057 0.943 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.105 0.895 36 H 0.083 0.917 37 H 0.118 0.882 38 H 0.128 0.872 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 7.820 1.238 7.361 10.810 hybrid contribution -0.389 -1.320 -1.102 1.763 sum 7.431 -0.082 6.259 9.716 Atomic orbital electron populations 1.21712 0.93674 1.01366 1.01890 1.19714 0.96189 0.96597 0.90710 1.21618 1.00558 0.93014 1.02784 1.23193 1.03332 0.82936 0.96551 1.70303 1.21232 1.32581 0.99722 1.22229 1.07458 0.89719 1.00508 1.21784 1.08903 1.00349 0.84536 1.45786 1.46331 1.10817 1.09656 1.21801 1.00601 0.87930 0.86284 0.90546 1.19633 0.90155 0.98807 0.93480 1.21368 1.03311 1.23129 1.09433 0.91508 1.25801 0.94971 0.97459 1.00650 1.70086 1.07245 1.40997 1.37727 0.85540 0.78595 0.78834 0.78644 1.20212 1.21162 1.18618 1.21830 0.99467 0.94291 0.99398 1.21758 0.97084 1.01889 0.94797 1.20333 1.01578 0.88138 0.97629 0.92426 0.91167 0.94578 0.90553 0.92971 0.90529 0.91829 0.79349 0.99797 0.94310 0.92851 0.93055 0.89497 0.91680 0.88209 0.87174 0.89553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.02 8.61 71.98 0.62 -4.40 16 2 C -0.01 -0.46 2.36 -11.54 -0.03 -0.49 16 3 C -0.12 -3.78 8.99 71.98 0.65 -3.13 16 4 C 0.20 8.18 6.39 138.25 0.88 9.06 16 5 N -0.52 -20.51 10.88 -188.77 -2.05 -22.56 16 6 C -0.05 -1.77 11.84 83.30 0.99 -0.79 16 7 C -0.04 -1.36 6.57 40.73 0.27 -1.09 16 8 N -0.44 -17.49 2.98 -477.88 -1.43 -18.91 16 9 C 0.14 5.48 2.86 45.09 0.13 5.61 16 10 H 0.08 3.07 8.14 -2.39 -0.02 3.05 16 11 C 0.02 0.81 3.35 29.85 0.10 0.91 16 12 C -0.53 -27.79 8.52 25.60 0.22 -27.57 16 13 H 0.07 3.28 7.03 -2.91 -0.02 3.26 16 14 C 0.01 0.56 5.46 84.66 0.46 1.02 16 15 N -0.92 -52.77 13.29 21.45 0.28 -52.48 16 16 Si 0.96 41.87 29.54 68.60 2.03 43.90 16 17 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 18 H -0.29 -12.44 7.11 99.48 0.71 -11.73 16 19 H -0.26 -10.87 7.11 99.48 0.71 -10.17 16 20 C -0.11 -3.83 4.89 30.84 0.15 -3.68 16 21 C -0.12 -2.94 5.96 30.93 0.18 -2.76 16 22 C -0.04 -0.95 6.32 30.03 0.19 -0.76 16 23 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 24 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 25 H 0.04 1.66 6.40 -2.39 -0.02 1.64 16 26 H 0.08 3.16 5.94 -2.39 -0.01 3.15 16 27 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 28 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.06 1.97 8.04 -2.39 -0.02 1.96 16 30 H 0.19 5.06 8.06 -2.91 -0.02 5.04 16 31 H -0.02 -0.92 7.91 -2.38 -0.02 -0.94 16 32 H 0.04 1.99 3.42 -2.39 -0.01 1.98 16 33 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 34 H 0.05 1.91 8.09 -2.38 -0.02 1.89 16 35 H 0.09 2.97 7.21 -2.39 -0.02 2.95 16 36 H 0.06 1.61 8.12 -2.39 -0.02 1.59 16 37 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -62.68 303.79 4.66 -58.02 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: 1.02 Total: 20.10 kcal Atomic # 6 Polarization: -32.87 SS G_CDS: 4.81 Total: -28.06 kcal Atomic # 7 Polarization: -90.76 SS G_CDS: -3.19 Total: -93.96 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Total: -62.68 4.66 -58.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259911331.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.160 kcal (2) G-P(sol) polarization free energy of solvation -62.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds