Wall clock time and date at job start Mon Mar 30 2020 05:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50699 * 109.47066 * 2 1 4 4 N 1.30782 * 125.72202 * 269.68807 * 3 2 1 5 5 C 1.34434 * 109.32077 * 179.82841 * 4 3 2 6 6 C 1.50696 * 126.10328 * 180.13724 * 5 4 3 7 7 C 1.50694 * 109.47095 * 262.90267 * 6 5 4 8 8 H 1.08002 * 120.00069 * 359.97438 * 7 6 5 9 9 C 1.37880 * 120.00335 * 180.02562 * 7 6 5 10 10 N 1.31516 * 119.99854 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00467 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47220 * 59.99604 * 11 9 7 13 13 H 1.48495 * 109.47031 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.46774 * 299.99954 * 11 9 7 15 15 C 1.33859 * 107.79318 * 0.39482 * 5 4 3 16 16 N 1.34412 * 125.72275 * 89.99957 * 3 2 1 17 17 C 1.46465 * 128.44424 * 0.12140 * 16 3 2 18 18 C 1.53280 * 108.69664 * 162.70455 * 17 16 3 19 19 C 1.53112 * 109.71308 * 50.73802 * 18 17 16 20 20 C 1.50711 * 128.67609 * 179.89625 * 15 5 4 21 21 H 1.09006 * 109.74142 * 283.79514 * 20 15 5 22 22 C 1.52998 * 109.74776 * 44.46778 * 20 15 5 23 23 H 1.08995 * 109.47546 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.47013 * 59.99544 * 1 2 3 25 25 H 1.08998 * 109.47195 * 300.00219 * 1 2 3 26 26 H 1.08991 * 109.46708 * 119.99989 * 2 1 3 27 27 H 1.09003 * 109.46795 * 240.00006 * 2 1 3 28 28 H 1.09006 * 109.46973 * 22.89877 * 6 5 4 29 29 H 1.08996 * 109.47525 * 142.90059 * 6 5 4 30 30 H 0.96999 * 120.00343 * 180.02562 * 10 9 7 31 31 H 1.09002 * 109.60161 * 282.47441 * 17 16 3 32 32 H 1.09009 * 109.59665 * 42.94329 * 17 16 3 33 33 H 1.09005 * 109.43332 * 290.65864 * 18 17 16 34 34 H 1.09006 * 109.38716 * 170.78862 * 18 17 16 35 35 H 1.09006 * 109.50199 * 170.13548 * 19 18 17 36 36 H 1.09001 * 109.52725 * 50.04847 * 19 18 17 37 37 H 1.08999 * 109.47364 * 43.10094 * 22 20 15 38 38 H 1.09009 * 109.47033 * 163.09927 * 22 20 15 39 39 H 1.09000 * 109.46974 * 283.09505 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2923 2.1388 -1.0618 5 6 2.7167 3.3566 -0.6822 6 6 3.1159 4.4836 -1.5995 7 6 4.6144 4.4945 -1.7591 8 1 5.2173 3.7592 -1.2471 9 6 5.2157 5.4439 -2.5579 10 7 4.4816 6.3397 -3.1809 11 14 7.0733 5.4579 -2.7551 12 1 7.5192 4.1660 -3.3358 13 1 7.4666 6.5684 -3.6591 14 1 7.7105 5.6502 -1.4276 15 6 2.7266 3.3876 0.6560 16 7 2.2939 2.1607 1.0912 17 6 2.1630 1.7832 2.5003 18 6 2.9691 2.7713 3.3507 19 6 2.5899 4.2061 2.9739 20 6 3.1229 4.5194 1.5689 21 1 4.2091 4.6060 1.5979 22 6 2.5134 5.8286 1.0638 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5139 0.8899 26 1 1.8933 -0.5138 0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 2.6478 4.3423 -2.5737 29 1 2.7890 5.4321 -1.1735 30 1 4.9046 7.0074 -3.7432 31 1 1.1136 1.8202 2.7928 32 1 2.5502 0.7746 2.6461 33 1 4.0337 2.6188 3.1725 34 1 2.7504 2.6035 4.4053 35 1 3.0283 4.8990 3.6922 36 1 1.5050 4.3106 2.9831 37 1 1.4800 5.6562 0.7630 38 1 2.5407 6.5730 1.8597 39 1 3.0853 6.1896 0.2090 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259918346.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:52 Heat of formation + Delta-G solvation = 32.774943 kcal Electronic energy + Delta-G solvation = -18784.391284 eV Core-core repulsion = 16112.821165 eV Total energy + Delta-G solvation = -2671.570119 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.71984 -36.60857 -34.67139 -32.90166 -32.49332 -30.30042 -29.16684 -26.86380 -25.73168 -23.56554 -22.91389 -22.29373 -20.32717 -19.27368 -18.35816 -16.30218 -15.78607 -15.40205 -14.53622 -14.40466 -14.23813 -13.98365 -13.76230 -13.43199 -12.91858 -12.73206 -12.32178 -12.07602 -11.67398 -11.49577 -11.39751 -11.14776 -11.11061 -10.99756 -10.79762 -10.68277 -10.61609 -10.41379 -9.91833 -9.68051 -9.31366 -8.91251 -8.55707 -8.23165 -7.15918 -5.88652 -3.89473 2.76758 3.32809 3.39740 3.43724 3.47194 4.05731 4.57801 4.63166 4.75074 4.79963 4.91200 5.16062 5.22263 5.33735 5.40617 5.45398 5.47020 5.62147 5.67506 5.76323 5.85475 5.89931 5.96666 6.02703 6.09635 6.23299 6.26470 6.32002 6.52125 6.72321 6.75889 6.97313 7.18688 7.65574 7.75381 7.92423 8.05507 8.10768 8.54757 9.07047 9.13808 9.71775 11.21228 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.021613 B = 0.007504 C = 0.006398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.228574 B = 3730.457369 C = 4375.512380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.030 4.030 3 C 0.184 3.816 4 N -0.488 5.488 5 C 0.062 3.938 6 C 0.085 3.915 7 C -0.497 4.497 8 H 0.050 0.950 9 C 0.058 3.942 10 N -0.897 5.897 11 Si 0.890 3.110 12 H -0.278 1.278 13 H -0.288 1.288 14 H -0.278 1.278 15 C -0.042 4.042 16 N -0.461 5.461 17 C 0.110 3.890 18 C -0.132 4.132 19 C -0.119 4.119 20 C -0.002 4.002 21 H 0.083 0.917 22 C -0.146 4.146 23 H 0.058 0.942 24 H 0.063 0.937 25 H 0.048 0.952 26 H 0.067 0.933 27 H 0.089 0.911 28 H 0.027 0.973 29 H 0.044 0.956 30 H 0.260 0.740 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.050 0.950 38 H 0.047 0.953 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.203 -8.044 14.205 17.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.069 4.069 3 C -0.076 4.076 4 N -0.208 5.208 5 C -0.066 4.066 6 C 0.047 3.953 7 C -0.536 4.536 8 H 0.069 0.931 9 C -0.143 4.143 10 N -0.537 5.537 11 Si 0.718 3.282 12 H -0.204 1.204 13 H -0.213 1.213 14 H -0.204 1.204 15 C -0.152 4.152 16 N -0.147 5.147 17 C -0.013 4.013 18 C -0.169 4.169 19 C -0.157 4.157 20 C -0.022 4.022 21 H 0.101 0.899 22 C -0.203 4.203 23 H 0.077 0.923 24 H 0.082 0.918 25 H 0.067 0.933 26 H 0.086 0.914 27 H 0.108 0.892 28 H 0.046 0.954 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.091 0.909 32 H 0.098 0.902 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.294 -8.209 13.412 16.938 hybrid contribution 1.189 0.125 0.726 1.398 sum -5.106 -8.085 14.138 17.068 Atomic orbital electron populations 1.21712 0.94635 1.01397 1.02396 1.19789 0.95821 0.88252 1.03059 1.22871 1.06563 0.96400 0.81804 1.70407 1.18360 1.04489 1.27555 1.21202 0.99773 0.94177 0.91427 1.17877 0.95877 0.88824 0.92723 1.21001 0.91409 1.13432 1.27802 0.93127 1.24944 0.97824 0.95713 0.95804 1.69943 1.35033 1.17514 1.31208 0.86684 0.86125 0.77470 0.77883 1.20395 1.21319 1.20395 1.20718 1.11749 0.87605 0.95135 1.45023 1.51515 1.12244 1.05960 1.21746 1.00818 0.99219 0.79550 1.21843 1.00789 0.95305 0.98995 1.21773 1.01201 0.95376 0.97371 1.19558 1.00377 0.91683 0.90572 0.89867 1.21939 1.01260 0.95067 1.02077 0.92271 0.91813 0.93278 0.91431 0.89236 0.95434 0.93776 0.93006 0.90861 0.90216 0.90903 0.90355 0.91184 0.91881 0.93119 0.93352 0.89140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.90 37.16 0.37 -1.32 16 2 C -0.03 -0.41 6.30 -27.88 -0.18 -0.59 16 3 C 0.18 3.51 7.20 -155.75 -1.12 2.39 16 4 N -0.49 -11.66 11.27 -7.27 -0.08 -11.74 16 5 C 0.06 1.53 6.18 -82.99 -0.51 1.02 16 6 C 0.08 2.34 5.08 -29.04 -0.15 2.19 16 7 C -0.50 -14.59 9.09 -34.44 -0.31 -14.90 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 10 N -0.90 -27.08 13.29 55.43 0.74 -26.35 16 11 Si 0.89 22.26 29.54 -169.99 -5.02 17.24 16 12 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 13 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 14 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 15 C -0.04 -0.86 6.02 -81.73 -0.49 -1.35 16 16 N -0.46 -8.14 3.13 -109.43 -0.34 -8.48 16 17 C 0.11 1.35 6.68 -3.92 -0.03 1.33 16 18 C -0.13 -1.50 5.91 -26.53 -0.16 -1.65 16 19 C -0.12 -1.55 5.23 -26.42 -0.14 -1.69 16 20 C 0.00 -0.04 3.04 -91.51 -0.28 -0.32 16 21 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 22 C -0.15 -2.59 8.09 37.16 0.30 -2.29 16 23 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.07 0.75 7.59 -51.93 -0.39 0.36 16 27 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.04 1.20 4.80 -51.93 -0.25 0.95 16 30 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.08 0.83 7.72 -51.92 -0.40 0.43 16 33 H 0.07 0.90 8.11 -51.93 -0.42 0.48 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.06 0.81 8.09 -51.93 -0.42 0.39 16 37 H 0.05 0.91 8.03 -51.93 -0.42 0.49 16 38 H 0.05 0.71 8.06 -51.92 -0.42 0.29 16 39 H 0.09 1.91 5.86 -51.93 -0.30 1.61 16 LS Contribution 310.30 15.07 4.68 4.68 Total: -1.00 -33.47 310.30 -9.19 -42.66 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: -6.37 Total: -2.39 kcal Atomic # 6 Polarization: -12.83 SS G_CDS: -2.79 Total: -15.62 kcal Atomic # 7 Polarization: -46.88 SS G_CDS: 0.31 Total: -46.57 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -33.47 -9.19 -42.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259918346.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.436 kcal (2) G-P(sol) polarization free energy of solvation -33.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds