Wall clock time and date at job start Mon Mar 30 2020 05:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50699 * 109.47066 * 2 1 4 4 N 1.30782 * 125.72202 * 269.68807 * 3 2 1 5 5 C 1.34434 * 109.32077 * 179.82841 * 4 3 2 6 6 C 1.50696 * 126.10328 * 180.13724 * 5 4 3 7 7 C 1.50694 * 109.47095 * 262.90267 * 6 5 4 8 8 H 1.08002 * 120.00069 * 359.97438 * 7 6 5 9 9 C 1.37880 * 120.00335 * 180.02562 * 7 6 5 10 10 N 1.31516 * 119.99854 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00467 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47220 * 59.99604 * 11 9 7 13 13 H 1.48495 * 109.47031 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.46774 * 299.99954 * 11 9 7 15 15 C 1.33859 * 107.79318 * 0.39482 * 5 4 3 16 16 N 1.34412 * 125.72275 * 89.99957 * 3 2 1 17 17 C 1.46465 * 128.44424 * 0.12140 * 16 3 2 18 18 C 1.53280 * 108.69664 * 162.70455 * 17 16 3 19 19 C 1.53112 * 109.71308 * 50.73802 * 18 17 16 20 20 C 1.50711 * 128.67609 * 179.89625 * 15 5 4 21 21 H 1.09006 * 109.74142 * 283.79514 * 20 15 5 22 22 C 1.52998 * 109.74776 * 44.46778 * 20 15 5 23 23 H 1.08995 * 109.47546 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.47013 * 59.99544 * 1 2 3 25 25 H 1.08998 * 109.47195 * 300.00219 * 1 2 3 26 26 H 1.08991 * 109.46708 * 119.99989 * 2 1 3 27 27 H 1.09003 * 109.46795 * 240.00006 * 2 1 3 28 28 H 1.09006 * 109.46973 * 22.89877 * 6 5 4 29 29 H 1.08996 * 109.47525 * 142.90059 * 6 5 4 30 30 H 0.96999 * 120.00343 * 180.02562 * 10 9 7 31 31 H 1.09002 * 109.60161 * 282.47441 * 17 16 3 32 32 H 1.09009 * 109.59665 * 42.94329 * 17 16 3 33 33 H 1.09005 * 109.43332 * 290.65864 * 18 17 16 34 34 H 1.09006 * 109.38716 * 170.78862 * 18 17 16 35 35 H 1.09006 * 109.50199 * 170.13548 * 19 18 17 36 36 H 1.09001 * 109.52725 * 50.04847 * 19 18 17 37 37 H 1.08999 * 109.47364 * 43.10094 * 22 20 15 38 38 H 1.09009 * 109.47033 * 163.09927 * 22 20 15 39 39 H 1.09000 * 109.46974 * 283.09505 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2923 2.1388 -1.0618 5 6 2.7167 3.3566 -0.6822 6 6 3.1159 4.4836 -1.5995 7 6 4.6144 4.4945 -1.7591 8 1 5.2173 3.7592 -1.2471 9 6 5.2157 5.4439 -2.5579 10 7 4.4816 6.3397 -3.1809 11 14 7.0733 5.4579 -2.7551 12 1 7.5192 4.1660 -3.3358 13 1 7.4666 6.5684 -3.6591 14 1 7.7105 5.6502 -1.4276 15 6 2.7266 3.3876 0.6560 16 7 2.2939 2.1607 1.0912 17 6 2.1630 1.7832 2.5003 18 6 2.9691 2.7713 3.3507 19 6 2.5899 4.2061 2.9739 20 6 3.1229 4.5194 1.5689 21 1 4.2091 4.6060 1.5979 22 6 2.5134 5.8286 1.0638 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5139 0.8899 26 1 1.8933 -0.5138 0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 2.6478 4.3423 -2.5737 29 1 2.7890 5.4321 -1.1735 30 1 4.9046 7.0074 -3.7432 31 1 1.1136 1.8202 2.7928 32 1 2.5502 0.7746 2.6461 33 1 4.0337 2.6188 3.1725 34 1 2.7504 2.6035 4.4053 35 1 3.0283 4.8990 3.6922 36 1 1.5050 4.3106 2.9831 37 1 1.4800 5.6562 0.7630 38 1 2.5407 6.5730 1.8597 39 1 3.0853 6.1896 0.2090 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259918346.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:52 Heat of formation + Delta-G solvation = 12.374583 kcal Electronic energy + Delta-G solvation = -18785.275910 eV Core-core repulsion = 16112.821165 eV Total energy + Delta-G solvation = -2672.454745 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.21445 -37.83076 -36.27154 -34.68130 -33.90080 -31.61281 -31.09068 -28.33544 -27.23152 -25.17528 -24.43401 -23.50765 -21.77351 -20.72835 -19.69422 -18.49563 -17.29055 -16.72916 -16.42336 -15.80529 -15.47811 -15.10130 -15.04061 -14.45244 -14.38657 -14.27332 -13.99338 -13.62207 -13.30667 -12.97506 -12.84114 -12.67271 -12.49172 -12.41491 -12.29222 -12.01684 -11.92071 -11.75988 -11.60064 -11.51215 -11.34025 -10.66124 -10.44212 -10.11221 -8.83102 -8.13386 -6.26029 1.27387 1.36688 1.40539 1.48575 2.03986 2.29968 2.50077 3.14509 3.57672 3.65534 3.77040 3.81488 4.00978 4.14452 4.33598 4.38866 4.42265 4.48155 4.59219 4.66421 4.73557 4.80356 4.85353 4.90333 4.96969 5.02624 5.10226 5.14321 5.18263 5.30233 5.32744 5.42707 5.49911 5.63080 5.74022 5.85139 6.03858 6.31351 6.62388 6.82581 7.39754 7.45938 8.94692 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.021613 B = 0.007504 C = 0.006398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.228574 B = 3730.457369 C = 4375.512380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.029 4.029 3 C 0.192 3.808 4 N -0.548 5.548 5 C 0.006 3.994 6 C 0.099 3.901 7 C -0.515 4.515 8 H 0.039 0.961 9 C 0.007 3.993 10 N -0.930 5.930 11 Si 0.961 3.039 12 H -0.277 1.277 13 H -0.276 1.276 14 H -0.263 1.263 15 C -0.032 4.032 16 N -0.455 5.455 17 C 0.097 3.903 18 C -0.128 4.128 19 C -0.111 4.111 20 C -0.008 4.008 21 H 0.067 0.933 22 C -0.137 4.137 23 H 0.093 0.907 24 H 0.035 0.965 25 H 0.057 0.943 26 H 0.106 0.894 27 H 0.083 0.917 28 H -0.023 1.023 29 H 0.038 0.962 30 H 0.265 0.735 31 H 0.099 0.901 32 H 0.109 0.891 33 H 0.060 0.940 34 H 0.124 0.876 35 H 0.095 0.905 36 H 0.069 0.931 37 H 0.041 0.959 38 H 0.083 0.917 39 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.985 -9.712 17.843 21.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.068 4.068 3 C -0.070 4.070 4 N -0.269 5.269 5 C -0.121 4.121 6 C 0.061 3.939 7 C -0.554 4.554 8 H 0.057 0.943 9 C -0.191 4.191 10 N -0.570 5.570 11 Si 0.786 3.214 12 H -0.203 1.203 13 H -0.200 1.200 14 H -0.188 1.188 15 C -0.145 4.145 16 N -0.140 5.140 17 C -0.024 4.024 18 C -0.165 4.165 19 C -0.149 4.149 20 C -0.027 4.027 21 H 0.085 0.915 22 C -0.195 4.195 23 H 0.111 0.889 24 H 0.054 0.946 25 H 0.076 0.924 26 H 0.124 0.876 27 H 0.102 0.898 28 H -0.005 1.005 29 H 0.055 0.945 30 H 0.074 0.926 31 H 0.118 0.882 32 H 0.127 0.873 33 H 0.079 0.921 34 H 0.142 0.858 35 H 0.114 0.886 36 H 0.088 0.912 37 H 0.060 0.940 38 H 0.102 0.898 39 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -6.085 -9.887 17.087 20.658 hybrid contribution 1.049 0.599 -0.399 1.272 sum -5.037 -9.287 16.688 19.751 Atomic orbital electron populations 1.21662 0.92943 1.03321 1.01452 1.20059 0.97113 0.84973 1.04660 1.23782 1.04272 0.97801 0.81173 1.70243 1.20832 1.05048 1.30807 1.20815 1.03931 0.94375 0.92989 1.17525 0.94901 0.90448 0.91033 1.21181 0.92347 1.13485 1.28337 0.94304 1.25839 1.03197 0.94976 0.95064 1.70073 1.37293 1.18041 1.31577 0.85569 0.79620 0.77658 0.78601 1.20259 1.20048 1.18795 1.20926 1.09853 0.89505 0.94181 1.45316 1.49825 1.10670 1.08154 1.22317 1.02988 1.01028 0.76047 1.21895 0.99837 0.93515 1.01266 1.21739 1.01515 0.97477 0.94153 1.19684 0.99518 0.90271 0.93269 0.91508 1.21801 0.99776 0.96417 1.01491 0.88859 0.94590 0.92405 0.87586 0.89797 1.00510 0.94461 0.92616 0.88245 0.87308 0.92118 0.85828 0.88624 0.91188 0.94015 0.89806 0.93677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 9.90 71.98 0.71 -2.15 16 2 C -0.03 -0.73 6.30 29.85 0.19 -0.55 16 3 C 0.19 7.23 7.20 138.25 0.99 8.23 16 4 N -0.55 -27.58 11.27 -176.91 -1.99 -29.57 16 5 C 0.01 0.31 6.18 41.16 0.25 0.57 16 6 C 0.10 5.94 5.08 29.10 0.15 6.09 16 7 C -0.51 -32.11 9.09 25.60 0.23 -31.88 16 8 H 0.04 2.44 7.74 -2.91 -0.02 2.42 16 9 C 0.01 0.42 5.46 84.66 0.46 0.88 16 10 N -0.93 -58.75 13.29 21.45 0.28 -58.46 16 11 Si 0.96 46.83 29.54 68.60 2.03 48.85 16 12 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 13 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 14 H -0.26 -12.13 7.11 99.48 0.71 -11.42 16 15 C -0.03 -1.33 6.02 40.73 0.25 -1.09 16 16 N -0.45 -15.37 3.13 -500.14 -1.57 -16.93 16 17 C 0.10 1.94 6.68 86.48 0.58 2.52 16 18 C -0.13 -2.30 5.91 30.73 0.18 -2.12 16 19 C -0.11 -2.51 5.23 30.80 0.16 -2.35 16 20 C -0.01 -0.27 3.04 -11.37 -0.03 -0.30 16 21 H 0.07 2.54 8.14 -2.38 -0.02 2.52 16 22 C -0.14 -5.02 8.09 71.98 0.58 -4.44 16 23 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 24 H 0.03 0.95 8.14 -2.38 -0.02 0.93 16 25 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.11 1.87 7.59 -2.39 -0.02 1.85 16 27 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 28 H -0.02 -1.60 8.14 -2.38 -0.02 -1.62 16 29 H 0.04 2.24 4.80 -2.39 -0.01 2.23 16 30 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 31 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.11 1.62 7.72 -2.38 -0.02 1.60 16 33 H 0.06 1.28 8.11 -2.38 -0.02 1.26 16 34 H 0.12 1.23 8.14 -2.38 -0.02 1.21 16 35 H 0.10 1.71 8.14 -2.38 -0.02 1.69 16 36 H 0.07 1.52 8.09 -2.39 -0.02 1.50 16 37 H 0.04 1.55 8.03 -2.39 -0.02 1.53 16 38 H 0.08 2.39 8.06 -2.38 -0.02 2.37 16 39 H 0.04 2.04 5.86 -2.39 -0.01 2.03 16 Total: -1.00 -80.79 310.30 4.47 -76.32 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: 1.01 Total: 6.37 kcal Atomic # 6 Polarization: -31.28 SS G_CDS: 4.71 Total: -26.58 kcal Atomic # 7 Polarization: -101.69 SS G_CDS: -3.28 Total: -104.97 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 2.03 Total: 48.85 kcal Total: -80.79 4.47 -76.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259918346.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.695 kcal (2) G-P(sol) polarization free energy of solvation -80.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds