Wall clock time and date at job start Mon Mar 30 2020 05:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50699 * 109.47070 * 2 1 4 4 N 1.30784 * 125.72512 * 90.02747 * 3 2 1 5 5 C 1.34424 * 109.32669 * 180.02562 * 4 3 2 6 6 C 1.50696 * 126.10371 * 179.97438 * 5 4 3 7 7 C 1.50704 * 109.47034 * 273.86551 * 6 5 4 8 8 H 1.07989 * 120.00052 * 0.02562 * 7 6 5 9 9 C 1.37878 * 119.99395 * 180.02562 * 7 6 5 10 10 N 1.31512 * 120.00453 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99605 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.47063 * 89.99871 * 11 9 7 13 13 H 1.48494 * 109.47069 * 209.99690 * 11 9 7 14 14 H 1.48501 * 109.47251 * 330.00006 * 11 9 7 15 15 C 1.33860 * 107.79410 * 359.97438 * 5 4 3 16 16 N 1.34404 * 125.72593 * 269.71217 * 3 2 1 17 17 C 1.46480 * 128.44208 * 0.43069 * 16 3 2 18 18 C 1.53281 * 108.63513 * 196.96061 * 17 16 3 19 19 C 1.53119 * 109.70847 * 309.03788 * 18 17 16 20 20 C 1.50710 * 128.67879 * 179.89954 * 15 5 4 21 21 H 1.09000 * 109.74849 * 76.11714 * 20 15 5 22 22 C 1.52996 * 109.74578 * 315.39291 * 20 15 5 23 23 H 1.09000 * 109.47296 * 299.99680 * 1 2 3 24 24 H 1.09003 * 109.47065 * 60.00001 * 1 2 3 25 25 H 1.09006 * 109.47197 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47296 * 240.00320 * 2 1 3 27 27 H 1.08999 * 109.47304 * 120.00436 * 2 1 3 28 28 H 1.08997 * 109.47036 * 33.86413 * 6 5 4 29 29 H 1.08999 * 109.47256 * 153.86516 * 6 5 4 30 30 H 0.97001 * 119.99793 * 180.02562 * 10 9 7 31 31 H 1.09005 * 109.79130 * 77.12588 * 17 16 3 32 32 H 1.08994 * 109.59398 * 316.68870 * 17 16 3 33 33 H 1.09006 * 109.43255 * 188.96682 * 18 17 16 34 34 H 1.09001 * 109.39515 * 69.08496 * 18 17 16 35 35 H 1.08996 * 109.50017 * 309.96311 * 19 18 17 36 36 H 1.08997 * 109.52586 * 189.87433 * 19 18 17 37 37 H 1.09010 * 109.46797 * 67.16311 * 22 20 15 38 38 H 1.08992 * 109.47550 * 187.15964 * 22 20 15 39 39 H 1.08997 * 109.47378 * 307.16601 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2873 2.1406 1.0617 5 6 2.7164 3.3567 0.6822 6 6 3.1147 4.4840 1.5996 7 6 1.8913 5.2766 1.9818 8 1 0.9223 4.9923 1.5991 9 6 2.0092 6.3649 2.8201 10 7 3.1891 6.7109 3.2866 11 14 0.4927 7.3471 3.2945 12 1 -0.1020 6.7742 4.5288 13 1 0.8752 8.7608 3.5394 14 1 -0.5008 7.2868 2.1924 15 6 2.7269 3.3876 -0.6560 16 7 2.2991 2.1589 -1.0911 17 6 2.1644 1.7827 -2.5003 18 6 2.9714 2.7705 -3.3503 19 6 2.5916 4.2054 -2.9744 20 6 3.1238 4.5191 -1.5689 21 1 4.2100 4.6064 -1.5964 22 6 2.5117 5.8280 -1.0660 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 3.5780 4.0753 2.4976 29 1 3.8243 5.1348 1.0887 30 1 3.2720 7.4764 3.8766 31 1 1.1152 1.8201 -2.7937 32 1 2.5496 0.7738 -2.6477 33 1 2.7546 2.6026 -4.4053 34 1 4.0355 2.6180 -3.1700 35 1 1.5067 4.3092 -2.9847 36 1 3.0303 4.8984 -3.6923 37 1 2.9673 6.0999 -0.1138 38 1 2.6940 6.6179 -1.7946 39 1 1.4379 5.6987 -0.9312 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259918349.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:55 Heat of formation + Delta-G solvation = 31.291597 kcal Electronic energy + Delta-G solvation = -18846.331062 eV Core-core repulsion = 16174.696621 eV Total energy + Delta-G solvation = -2671.634442 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.72279 -36.60012 -34.68476 -32.91127 -32.43352 -30.28547 -29.17031 -26.85205 -25.62117 -23.64499 -22.78140 -22.26091 -20.39875 -19.24383 -18.34643 -16.17485 -15.95255 -15.37698 -14.53039 -14.39647 -14.21925 -13.95361 -13.72832 -13.42715 -12.83315 -12.65723 -12.25066 -11.93165 -11.84402 -11.51990 -11.34872 -11.13823 -11.05354 -10.92175 -10.76321 -10.66717 -10.57920 -10.40586 -9.85530 -9.69303 -9.30693 -8.89024 -8.56600 -8.25507 -7.17288 -5.88326 -3.88427 2.75740 3.32572 3.39407 3.45247 3.48817 4.05266 4.58784 4.62543 4.74267 4.80725 4.91161 5.17120 5.23480 5.35465 5.41217 5.46056 5.49352 5.63491 5.67790 5.77353 5.85784 5.88775 5.96898 6.07534 6.13417 6.30801 6.31819 6.37851 6.58962 6.73406 6.83940 7.16659 7.30903 7.65478 7.71698 7.91092 8.04928 8.09780 8.54188 9.07058 9.14337 9.72450 11.21556 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.021318 B = 0.007817 C = 0.006491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.121637 B = 3581.285187 C = 4312.433216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.029 4.029 3 C 0.185 3.815 4 N -0.485 5.485 5 C 0.063 3.937 6 C 0.093 3.907 7 C -0.489 4.489 8 H 0.052 0.948 9 C 0.056 3.944 10 N -0.898 5.898 11 Si 0.889 3.111 12 H -0.282 1.282 13 H -0.287 1.287 14 H -0.275 1.275 15 C -0.046 4.046 16 N -0.460 5.460 17 C 0.109 3.891 18 C -0.131 4.131 19 C -0.120 4.120 20 C -0.004 4.004 21 H 0.074 0.926 22 C -0.146 4.146 23 H 0.064 0.936 24 H 0.048 0.952 25 H 0.058 0.942 26 H 0.067 0.933 27 H 0.089 0.911 28 H 0.028 0.972 29 H 0.033 0.967 30 H 0.259 0.741 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.098 0.902 38 H 0.041 0.959 39 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.640 -9.494 -14.406 17.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.068 4.068 3 C -0.076 4.076 4 N -0.205 5.205 5 C -0.065 4.065 6 C 0.055 3.945 7 C -0.528 4.528 8 H 0.070 0.930 9 C -0.144 4.144 10 N -0.538 5.538 11 Si 0.717 3.283 12 H -0.208 1.208 13 H -0.213 1.213 14 H -0.200 1.200 15 C -0.156 4.156 16 N -0.147 5.147 17 C -0.014 4.014 18 C -0.168 4.168 19 C -0.157 4.157 20 C -0.023 4.023 21 H 0.093 0.907 22 C -0.203 4.203 23 H 0.083 0.917 24 H 0.067 0.933 25 H 0.077 0.923 26 H 0.085 0.915 27 H 0.107 0.893 28 H 0.046 0.954 29 H 0.051 0.949 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.117 0.883 38 H 0.060 0.940 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.656 -9.681 -13.627 16.798 hybrid contribution -0.841 0.733 -0.587 1.261 sum -2.498 -8.948 -14.214 16.981 Atomic orbital electron populations 1.21717 0.94588 1.01365 1.02579 1.19784 0.95918 0.88197 1.02935 1.22897 1.06534 0.96389 0.81788 1.70395 1.18042 1.04598 1.27450 1.21189 1.00398 0.93660 0.91258 1.17719 0.96546 0.87849 0.92367 1.20974 0.93449 1.10713 1.27647 0.92988 1.24942 0.95659 0.97538 0.96244 1.69954 1.22377 1.27559 1.33876 0.86640 0.83531 0.79216 0.78916 1.20794 1.21344 1.20049 1.20763 1.12324 0.87381 0.95151 1.45021 1.51557 1.12181 1.05949 1.21741 1.00935 0.99142 0.79559 1.21841 1.00558 0.95405 0.99036 1.21770 1.01479 0.95209 0.97280 1.19609 0.99506 0.92369 0.90847 0.90741 1.21994 1.01803 0.93617 1.02860 0.91668 0.93272 0.92288 0.91472 0.89276 0.95383 0.94865 0.93092 0.90849 0.90221 0.90368 0.91058 0.91717 0.91226 0.88323 0.94022 0.92700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.89 37.16 0.37 -1.43 16 2 C -0.03 -0.40 6.30 -27.88 -0.18 -0.58 16 3 C 0.18 3.50 7.20 -155.76 -1.12 2.38 16 4 N -0.48 -11.54 11.27 -7.27 -0.08 -11.63 16 5 C 0.06 1.54 6.18 -83.00 -0.51 1.03 16 6 C 0.09 2.54 4.60 -29.03 -0.13 2.41 16 7 C -0.49 -14.08 7.65 -34.44 -0.26 -14.34 16 8 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 10 N -0.90 -26.91 13.29 55.43 0.74 -26.18 16 11 Si 0.89 22.20 29.54 -169.99 -5.02 17.18 16 12 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 13 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 14 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 15 C -0.05 -0.94 6.08 -81.73 -0.50 -1.44 16 16 N -0.46 -8.09 3.13 -109.43 -0.34 -8.44 16 17 C 0.11 1.34 6.68 -3.91 -0.03 1.32 16 18 C -0.13 -1.45 5.91 -26.52 -0.16 -1.60 16 19 C -0.12 -1.58 5.28 -26.40 -0.14 -1.72 16 20 C 0.00 -0.06 2.93 -91.50 -0.27 -0.33 16 21 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 22 C -0.15 -2.77 8.15 37.16 0.30 -2.47 16 23 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 24 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.07 0.74 7.59 -51.93 -0.39 0.34 16 27 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.03 0.91 6.34 -51.93 -0.33 0.58 16 30 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.08 0.80 7.72 -51.93 -0.40 0.40 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.82 8.11 -51.93 -0.42 0.40 16 35 H 0.06 0.89 8.08 -51.93 -0.42 0.47 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.10 2.24 4.68 -51.92 -0.24 2.00 16 38 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 LS Contribution 308.98 15.07 4.66 4.66 Total: -1.00 -32.97 308.98 -9.17 -42.14 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: -6.40 Total: -2.49 kcal Atomic # 6 Polarization: -12.52 SS G_CDS: -2.72 Total: -15.24 kcal Atomic # 7 Polarization: -46.55 SS G_CDS: 0.31 Total: -46.24 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.97 -9.17 -42.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259918349.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.434 kcal (2) G-P(sol) polarization free energy of solvation -32.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds