Wall clock time and date at job start Mon Mar 30 2020 05:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50699 * 109.47070 * 2 1 4 4 N 1.30784 * 125.72512 * 90.02747 * 3 2 1 5 5 C 1.34424 * 109.32669 * 180.02562 * 4 3 2 6 6 C 1.50696 * 126.10371 * 179.97438 * 5 4 3 7 7 C 1.50704 * 109.47034 * 273.86551 * 6 5 4 8 8 H 1.07989 * 120.00052 * 0.02562 * 7 6 5 9 9 C 1.37878 * 119.99395 * 180.02562 * 7 6 5 10 10 N 1.31512 * 120.00453 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99605 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.47063 * 89.99871 * 11 9 7 13 13 H 1.48494 * 109.47069 * 209.99690 * 11 9 7 14 14 H 1.48501 * 109.47251 * 330.00006 * 11 9 7 15 15 C 1.33860 * 107.79410 * 359.97438 * 5 4 3 16 16 N 1.34404 * 125.72593 * 269.71217 * 3 2 1 17 17 C 1.46480 * 128.44208 * 0.43069 * 16 3 2 18 18 C 1.53281 * 108.63513 * 196.96061 * 17 16 3 19 19 C 1.53119 * 109.70847 * 309.03788 * 18 17 16 20 20 C 1.50710 * 128.67879 * 179.89954 * 15 5 4 21 21 H 1.09000 * 109.74849 * 76.11714 * 20 15 5 22 22 C 1.52996 * 109.74578 * 315.39291 * 20 15 5 23 23 H 1.09000 * 109.47296 * 299.99680 * 1 2 3 24 24 H 1.09003 * 109.47065 * 60.00001 * 1 2 3 25 25 H 1.09006 * 109.47197 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47296 * 240.00320 * 2 1 3 27 27 H 1.08999 * 109.47304 * 120.00436 * 2 1 3 28 28 H 1.08997 * 109.47036 * 33.86413 * 6 5 4 29 29 H 1.08999 * 109.47256 * 153.86516 * 6 5 4 30 30 H 0.97001 * 119.99793 * 180.02562 * 10 9 7 31 31 H 1.09005 * 109.79130 * 77.12588 * 17 16 3 32 32 H 1.08994 * 109.59398 * 316.68870 * 17 16 3 33 33 H 1.09006 * 109.43255 * 188.96682 * 18 17 16 34 34 H 1.09001 * 109.39515 * 69.08496 * 18 17 16 35 35 H 1.08996 * 109.50017 * 309.96311 * 19 18 17 36 36 H 1.08997 * 109.52586 * 189.87433 * 19 18 17 37 37 H 1.09010 * 109.46797 * 67.16311 * 22 20 15 38 38 H 1.08992 * 109.47550 * 187.15964 * 22 20 15 39 39 H 1.08997 * 109.47378 * 307.16601 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2873 2.1406 1.0617 5 6 2.7164 3.3567 0.6822 6 6 3.1147 4.4840 1.5996 7 6 1.8913 5.2766 1.9818 8 1 0.9223 4.9923 1.5991 9 6 2.0092 6.3649 2.8201 10 7 3.1891 6.7109 3.2866 11 14 0.4927 7.3471 3.2945 12 1 -0.1020 6.7742 4.5288 13 1 0.8752 8.7608 3.5394 14 1 -0.5008 7.2868 2.1924 15 6 2.7269 3.3876 -0.6560 16 7 2.2991 2.1589 -1.0911 17 6 2.1644 1.7827 -2.5003 18 6 2.9714 2.7705 -3.3503 19 6 2.5916 4.2054 -2.9744 20 6 3.1238 4.5191 -1.5689 21 1 4.2100 4.6064 -1.5964 22 6 2.5117 5.8280 -1.0660 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 3.5780 4.0753 2.4976 29 1 3.8243 5.1348 1.0887 30 1 3.2720 7.4764 3.8766 31 1 1.1152 1.8201 -2.7937 32 1 2.5496 0.7738 -2.6477 33 1 2.7546 2.6026 -4.4053 34 1 4.0355 2.6180 -3.1700 35 1 1.5067 4.3092 -2.9847 36 1 3.0303 4.8984 -3.6923 37 1 2.9673 6.0999 -0.1138 38 1 2.6940 6.6179 -1.7946 39 1 1.4379 5.6987 -0.9312 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259918349.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:54 Heat of formation + Delta-G solvation = 11.329144 kcal Electronic energy + Delta-G solvation = -18847.196699 eV Core-core repulsion = 16174.696621 eV Total energy + Delta-G solvation = -2672.500078 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.21068 -37.81964 -36.30135 -34.65334 -33.87258 -31.59342 -31.08467 -28.39060 -27.07420 -25.25071 -24.35595 -23.47915 -21.82024 -20.69690 -19.69029 -18.43381 -17.33690 -16.72707 -16.40863 -15.80833 -15.46624 -15.10205 -15.00091 -14.44212 -14.34071 -14.09865 -13.93317 -13.81111 -13.30086 -13.01082 -12.76434 -12.64730 -12.50285 -12.41144 -12.22166 -12.00971 -11.92037 -11.77577 -11.60441 -11.47641 -11.32270 -10.64045 -10.45570 -10.11550 -8.83275 -8.11759 -6.22319 1.27036 1.37080 1.39080 1.49546 2.04429 2.30458 2.51019 3.16582 3.58545 3.65964 3.77511 3.82331 4.03027 4.14951 4.34097 4.39149 4.42525 4.47158 4.57340 4.71950 4.75034 4.81636 4.86763 4.93470 4.96568 5.02586 5.10901 5.16801 5.21618 5.32479 5.33256 5.40339 5.59511 5.69380 5.72791 5.87076 6.03642 6.32501 6.62272 6.84568 7.42409 7.46752 8.96671 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.021318 B = 0.007817 C = 0.006491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.121637 B = 3581.285187 C = 4312.433216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.028 4.028 3 C 0.192 3.808 4 N -0.545 5.545 5 C 0.007 3.993 6 C 0.111 3.889 7 C -0.496 4.496 8 H 0.037 0.963 9 C 0.007 3.993 10 N -0.930 5.930 11 Si 0.956 3.044 12 H -0.279 1.279 13 H -0.274 1.274 14 H -0.268 1.268 15 C -0.035 4.035 16 N -0.454 5.454 17 C 0.096 3.904 18 C -0.125 4.125 19 C -0.113 4.113 20 C -0.008 4.008 21 H 0.077 0.923 22 C -0.137 4.137 23 H 0.031 0.969 24 H 0.054 0.946 25 H 0.094 0.906 26 H 0.109 0.891 27 H 0.086 0.914 28 H -0.020 1.020 29 H 0.020 0.980 30 H 0.264 0.736 31 H 0.092 0.908 32 H 0.113 0.887 33 H 0.122 0.878 34 H 0.068 0.932 35 H 0.060 0.940 36 H 0.096 0.904 37 H 0.052 0.948 38 H 0.073 0.927 39 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.918 -10.811 -17.877 21.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.067 4.067 3 C -0.071 4.071 4 N -0.266 5.266 5 C -0.121 4.121 6 C 0.073 3.927 7 C -0.534 4.534 8 H 0.055 0.945 9 C -0.191 4.191 10 N -0.571 5.571 11 Si 0.781 3.219 12 H -0.205 1.205 13 H -0.199 1.199 14 H -0.192 1.192 15 C -0.148 4.148 16 N -0.139 5.139 17 C -0.025 4.025 18 C -0.162 4.162 19 C -0.150 4.150 20 C -0.028 4.028 21 H 0.095 0.905 22 C -0.194 4.194 23 H 0.051 0.949 24 H 0.073 0.927 25 H 0.113 0.887 26 H 0.127 0.873 27 H 0.105 0.895 28 H -0.002 1.002 29 H 0.038 0.962 30 H 0.073 0.927 31 H 0.110 0.890 32 H 0.131 0.869 33 H 0.140 0.860 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.115 0.885 37 H 0.071 0.929 38 H 0.092 0.908 39 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -2.936 -11.011 -17.132 20.576 hybrid contribution -0.418 1.074 0.466 1.243 sum -3.354 -9.937 -16.666 19.692 Atomic orbital electron populations 1.21673 0.93438 1.03265 1.01220 1.20051 0.96719 0.85035 1.04858 1.23796 1.04288 0.97814 0.81171 1.70227 1.20475 1.05161 1.30704 1.20800 1.04571 0.93866 0.92823 1.17305 0.95543 0.88797 0.91029 1.21041 0.93133 1.11300 1.27961 0.94500 1.25777 0.98866 0.98466 0.95970 1.70074 1.24512 1.28157 1.34362 0.85581 0.79667 0.78039 0.78578 1.20455 1.19894 1.19249 1.20985 1.10369 0.89258 0.94217 1.45312 1.49852 1.10621 1.08129 1.22310 1.02773 1.01279 0.76110 1.21883 1.00092 0.93137 1.01131 1.21735 1.01174 0.97731 0.94392 1.19742 0.99666 0.90190 0.93164 0.90512 1.21824 0.99978 0.95964 1.01640 0.94924 0.92723 0.88717 0.87322 0.89510 1.00221 0.96206 0.92725 0.88950 0.86904 0.86005 0.91360 0.92083 0.88516 0.92858 0.90832 0.94763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 9.89 71.98 0.71 -2.38 16 2 C -0.03 -0.69 6.30 29.85 0.19 -0.51 16 3 C 0.19 7.17 7.20 138.25 0.99 8.17 16 4 N -0.54 -27.21 11.27 -176.92 -1.99 -29.21 16 5 C 0.01 0.34 6.18 41.16 0.25 0.60 16 6 C 0.11 6.61 4.60 29.10 0.13 6.75 16 7 C -0.50 -30.40 7.65 25.60 0.20 -30.21 16 8 H 0.04 2.31 7.74 -2.92 -0.02 2.29 16 9 C 0.01 0.40 5.46 84.66 0.46 0.86 16 10 N -0.93 -58.40 13.29 21.45 0.28 -58.12 16 11 Si 0.96 46.89 29.54 68.60 2.03 48.91 16 12 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 13 H -0.27 -12.76 7.11 99.48 0.71 -12.06 16 14 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 15 C -0.04 -1.47 6.08 40.73 0.25 -1.22 16 16 N -0.45 -15.22 3.13 -500.12 -1.57 -16.78 16 17 C 0.10 1.90 6.68 86.48 0.58 2.48 16 18 C -0.13 -2.15 5.91 30.73 0.18 -1.97 16 19 C -0.11 -2.58 5.28 30.81 0.16 -2.41 16 20 C -0.01 -0.27 2.93 -11.36 -0.03 -0.31 16 21 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 22 C -0.14 -5.33 8.15 71.98 0.59 -4.75 16 23 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 24 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 26 H 0.11 1.84 7.59 -2.39 -0.02 1.82 16 27 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 28 H -0.02 -1.37 8.14 -2.39 -0.02 -1.39 16 29 H 0.02 1.20 6.34 -2.39 -0.02 1.18 16 30 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 31 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 32 H 0.11 1.57 7.72 -2.39 -0.02 1.55 16 33 H 0.12 1.16 8.14 -2.38 -0.02 1.14 16 34 H 0.07 1.27 8.11 -2.39 -0.02 1.25 16 35 H 0.06 1.46 8.08 -2.39 -0.02 1.44 16 36 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.05 2.57 4.68 -2.38 -0.01 2.56 16 38 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 39 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -79.54 308.98 4.43 -75.11 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: 1.01 Total: 4.98 kcal Atomic # 6 Polarization: -29.56 SS G_CDS: 4.66 Total: -24.90 kcal Atomic # 7 Polarization: -100.83 SS G_CDS: -3.27 Total: -104.11 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 2.03 Total: 48.91 kcal Total: -79.54 4.43 -75.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259918349.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.437 kcal (2) G-P(sol) polarization free energy of solvation -79.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds