Wall clock time and date at job start Mon Mar 30 2020 06:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47208 * 2 1 4 4 C 1.53005 * 109.46853 * 240.00300 * 2 1 3 5 5 H 1.09000 * 109.46972 * 299.35665 * 4 2 1 6 6 C 1.50702 * 109.46748 * 179.36333 * 4 2 1 7 7 H 1.08003 * 119.99374 * 244.36736 * 6 4 2 8 8 C 1.37874 * 120.00209 * 64.37220 * 6 4 2 9 9 N 1.31507 * 120.00074 * 5.46500 * 8 6 4 10 10 Si 1.86799 * 120.00024 * 185.47022 * 8 6 4 11 11 H 1.48504 * 109.46958 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47462 * 119.99550 * 10 8 6 13 13 H 1.48502 * 109.47171 * 240.00076 * 10 8 6 14 14 C 1.50697 * 109.47246 * 59.35937 * 4 2 1 15 15 C 1.40066 * 126.09466 * 66.84964 * 14 4 2 16 16 N 1.31027 * 108.24568 * 179.80497 * 15 14 4 17 17 N 1.39651 * 108.13472 * 0.39966 * 16 15 14 18 18 C 1.34743 * 126.10384 * 247.15662 * 14 4 2 19 19 C 1.50871 * 127.76516 * 0.05787 * 18 14 4 20 20 C 1.53434 * 108.17701 * 164.23648 * 19 18 14 21 21 C 1.53149 * 109.18748 * 48.56584 * 20 19 18 22 22 C 1.46588 * 127.55608 * 179.85294 * 17 16 15 23 23 H 1.09001 * 109.47420 * 174.93767 * 1 2 3 24 24 H 1.08997 * 109.47283 * 54.93888 * 1 2 3 25 25 H 1.09000 * 109.47011 * 294.93687 * 1 2 3 26 26 H 1.09003 * 109.46961 * 120.00586 * 2 1 3 27 27 H 1.09009 * 109.47170 * 70.10355 * 3 2 1 28 28 H 1.09001 * 109.47364 * 190.09864 * 3 2 1 29 29 H 1.08995 * 109.47637 * 310.10631 * 3 2 1 30 30 H 0.97006 * 120.00426 * 180.02562 * 9 8 6 31 31 H 1.07987 * 125.87762 * 359.97438 * 15 14 4 32 32 H 1.09001 * 109.72212 * 283.91046 * 19 18 14 33 33 H 1.09007 * 109.71585 * 44.56690 * 19 18 14 34 34 H 1.08999 * 109.51534 * 168.47786 * 20 19 18 35 35 H 1.09000 * 109.52169 * 288.65193 * 20 19 18 36 36 H 1.09004 * 109.45873 * 50.58632 * 21 20 19 37 37 H 1.09003 * 109.45645 * 170.53022 * 21 20 19 38 38 H 1.08993 * 109.58169 * 42.85998 * 22 17 16 39 39 H 1.09006 * 109.69289 * 282.51996 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2493 5 1 1.6860 -1.7521 -1.2436 6 6 3.5469 -0.7075 -1.2572 7 1 4.0779 -0.1775 -2.0341 8 6 4.2475 -1.3717 -0.2729 9 7 3.6058 -2.1055 0.6098 10 14 6.1083 -1.2293 -0.1931 11 1 6.5852 -0.3515 -1.2920 12 1 6.5046 -0.6463 1.1140 13 1 6.7147 -2.5771 -0.3382 14 6 1.5247 -0.0200 -2.4797 15 6 1.8756 1.2682 -2.9032 16 7 1.2277 1.5260 -4.0125 17 7 0.4393 0.4161 -4.3235 18 6 0.6399 -0.5181 -3.3655 19 6 -0.0343 -1.8675 -3.3388 20 6 -1.2257 -1.8265 -4.3047 21 6 -0.7684 -1.2402 -5.6436 22 6 -0.4571 0.2503 -5.4714 23 1 -0.3634 -1.0236 -0.0907 24 1 -0.3634 0.5903 -0.8412 25 1 -0.3633 0.4333 0.9319 26 1 1.8933 -0.5139 0.8900 27 1 1.8314 1.9016 0.9664 28 1 3.1150 1.4478 -0.1802 29 1 1.5370 2.0057 -0.7859 30 1 4.0986 -2.5725 1.3026 31 1 2.5640 1.9332 -2.4031 32 1 0.6699 -2.6368 -3.6558 33 1 -0.3859 -2.0831 -2.3298 34 1 -1.6037 -2.8370 -4.4598 35 1 -2.0142 -1.2024 -3.8842 36 1 0.1274 -1.7616 -5.9812 37 1 -1.5599 -1.3628 -6.3829 38 1 0.0278 0.6286 -6.3712 39 1 -1.3827 0.7990 -5.2969 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259925389.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:03 Heat of formation + Delta-G solvation = 51.276676 kcal Electronic energy + Delta-G solvation = -19102.745511 eV Core-core repulsion = 16431.977687 eV Total energy + Delta-G solvation = -2670.767824 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.84694 -36.51670 -35.46480 -32.03976 -31.68770 -29.73921 -28.51293 -26.23042 -25.84569 -23.84526 -22.90793 -21.70170 -19.97634 -18.86939 -17.75995 -16.24286 -15.44054 -15.17104 -14.48144 -14.21535 -13.98431 -13.78619 -13.61292 -13.18118 -12.70023 -12.57351 -12.09616 -11.91254 -11.48643 -11.36174 -11.03141 -10.93219 -10.90363 -10.85413 -10.70022 -10.54640 -10.13581 -9.88106 -9.70929 -9.47846 -9.08885 -8.82347 -8.38524 -8.23732 -7.21314 -5.93030 -3.93501 2.65296 3.15567 3.34023 3.42830 3.47128 3.81259 4.51963 4.64696 4.78090 4.91305 5.17304 5.38791 5.40095 5.50991 5.61018 5.74095 5.89757 5.91152 6.01663 6.19908 6.26568 6.28329 6.34255 6.40918 6.59797 6.65030 6.73738 6.86800 6.96455 7.04348 7.10965 7.51588 7.54773 7.64459 7.81234 7.90280 8.02648 8.14416 8.51157 8.63167 9.08751 9.68448 11.14742 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.025270 B = 0.007476 C = 0.007314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.754922 B = 3744.227973 C = 3827.207313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.081 4.081 3 C -0.135 4.135 4 C 0.119 3.881 5 H 0.035 0.965 6 C -0.496 4.496 7 H 0.055 0.945 8 C 0.063 3.937 9 N -0.890 5.890 10 Si 0.882 3.118 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.287 1.287 14 C -0.162 4.162 15 C 0.054 3.946 16 N -0.321 5.321 17 N -0.387 5.387 18 C 0.050 3.950 19 C -0.050 4.050 20 C -0.124 4.124 21 C -0.134 4.134 22 C 0.141 3.859 23 H 0.040 0.960 24 H 0.037 0.963 25 H 0.030 0.970 26 H 0.086 0.914 27 H 0.022 0.978 28 H 0.065 0.935 29 H 0.038 0.962 30 H 0.258 0.742 31 H 0.177 0.823 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.186 1.026 -7.739 12.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.100 4.100 3 C -0.192 4.192 4 C 0.100 3.900 5 H 0.053 0.947 6 C -0.534 4.534 7 H 0.073 0.927 8 C -0.138 4.138 9 N -0.529 5.529 10 Si 0.710 3.290 11 H -0.198 1.198 12 H -0.211 1.211 13 H -0.213 1.213 14 C -0.173 4.173 15 C -0.131 4.131 16 N -0.142 5.142 17 N -0.173 5.173 18 C -0.074 4.074 19 C -0.089 4.089 20 C -0.161 4.161 21 C -0.172 4.172 22 C 0.019 3.981 23 H 0.059 0.941 24 H 0.056 0.944 25 H 0.049 0.951 26 H 0.104 0.896 27 H 0.041 0.959 28 H 0.084 0.916 29 H 0.057 0.943 30 H 0.068 0.932 31 H 0.194 0.806 32 H 0.100 0.900 33 H 0.106 0.894 34 H 0.091 0.909 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.452 1.776 -8.641 12.929 hybrid contribution 1.250 -0.452 0.716 1.510 sum -8.201 1.325 -7.925 11.482 Atomic orbital electron populations 1.21858 0.98909 0.99790 0.98955 1.21036 0.91327 0.95443 1.02213 1.21900 1.02168 0.97082 0.98085 1.17251 0.94366 0.93316 0.85104 0.94710 1.21138 0.90726 1.31438 1.10101 0.92702 1.24905 0.97683 0.95131 0.96045 1.69931 1.35059 1.30862 1.17085 0.86693 0.86690 0.77727 0.77879 1.19826 1.21093 1.21319 1.20358 1.00439 0.95335 1.01128 1.23894 0.99011 0.97174 0.92980 1.77092 1.10808 1.08126 1.18170 1.48285 1.36269 1.12178 1.20546 1.20640 1.01347 0.93176 0.92245 1.20294 0.95774 0.92144 1.00689 1.21658 0.98219 1.01368 0.94878 1.21910 1.02415 0.94291 0.98613 1.21483 0.92308 0.97013 0.87251 0.94085 0.94372 0.95112 0.89590 0.95923 0.91630 0.94301 0.93230 0.80597 0.90026 0.89395 0.90933 0.91654 0.90820 0.89948 0.90168 0.91162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 8.82 37.16 0.33 -2.40 16 2 C -0.08 -1.84 2.58 -90.62 -0.23 -2.07 16 3 C -0.14 -2.84 7.79 37.15 0.29 -2.55 16 4 C 0.12 2.86 1.87 -92.92 -0.17 2.68 16 5 H 0.03 0.91 7.49 -51.93 -0.39 0.52 16 6 C -0.50 -13.11 6.86 -34.44 -0.24 -13.35 16 7 H 0.05 1.49 7.53 -52.48 -0.40 1.09 16 8 C 0.06 1.70 5.26 -17.82 -0.09 1.61 16 9 N -0.89 -24.75 11.90 55.43 0.66 -24.10 16 10 Si 0.88 21.09 29.54 -169.99 -5.02 16.07 16 11 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 14 C -0.16 -3.53 3.49 -105.18 -0.37 -3.89 16 15 C 0.05 1.16 9.34 -17.21 -0.16 0.99 16 16 N -0.32 -6.60 12.62 30.70 0.39 -6.22 16 17 N -0.39 -7.07 4.04 -56.96 -0.23 -7.30 16 18 C 0.05 0.96 6.59 -82.22 -0.54 0.41 16 19 C -0.05 -0.79 5.67 -27.57 -0.16 -0.95 16 20 C -0.12 -1.45 5.97 -26.43 -0.16 -1.61 16 21 C -0.13 -1.45 5.93 -26.53 -0.16 -1.61 16 22 C 0.14 1.87 7.28 -3.87 -0.03 1.84 16 23 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 24 H 0.04 0.75 7.36 -51.93 -0.38 0.37 16 25 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.09 2.20 6.66 -51.93 -0.35 1.86 16 27 H 0.02 0.43 8.14 -51.92 -0.42 0.01 16 28 H 0.06 1.46 6.85 -51.93 -0.36 1.11 16 29 H 0.04 0.77 5.64 -51.93 -0.29 0.48 16 30 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 31 H 0.18 3.59 6.77 -52.49 -0.36 3.23 16 32 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.09 1.41 8.06 -51.93 -0.42 0.99 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.76 8.12 -51.93 -0.42 0.34 16 36 H 0.07 0.85 8.12 -51.93 -0.42 0.43 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 302.92 15.07 4.56 4.56 Total: -1.00 -29.41 302.92 -7.62 -37.04 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -6.29 Total: 0.82 kcal Atomic # 6 Polarization: -19.20 SS G_CDS: -1.69 Total: -20.89 kcal Atomic # 7 Polarization: -38.42 SS G_CDS: 0.82 Total: -37.61 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.41 -7.62 -37.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259925389.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.315 kcal (2) G-P(sol) polarization free energy of solvation -29.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds