Wall clock time and date at job start Mon Mar 30 2020 06:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47208 * 2 1 4 4 C 1.53005 * 109.46853 * 240.00300 * 2 1 3 5 5 H 1.09000 * 109.46972 * 299.35665 * 4 2 1 6 6 C 1.50702 * 109.46748 * 179.36333 * 4 2 1 7 7 H 1.08003 * 119.99374 * 244.36736 * 6 4 2 8 8 C 1.37874 * 120.00209 * 64.37220 * 6 4 2 9 9 N 1.31507 * 120.00074 * 5.46500 * 8 6 4 10 10 Si 1.86799 * 120.00024 * 185.47022 * 8 6 4 11 11 H 1.48504 * 109.46958 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47462 * 119.99550 * 10 8 6 13 13 H 1.48502 * 109.47171 * 240.00076 * 10 8 6 14 14 C 1.50697 * 109.47246 * 59.35937 * 4 2 1 15 15 C 1.40066 * 126.09466 * 66.84964 * 14 4 2 16 16 N 1.31027 * 108.24568 * 179.80497 * 15 14 4 17 17 N 1.39651 * 108.13472 * 0.39966 * 16 15 14 18 18 C 1.34743 * 126.10384 * 247.15662 * 14 4 2 19 19 C 1.50871 * 127.76516 * 0.05787 * 18 14 4 20 20 C 1.53434 * 108.17701 * 164.23648 * 19 18 14 21 21 C 1.53149 * 109.18748 * 48.56584 * 20 19 18 22 22 C 1.46588 * 127.55608 * 179.85294 * 17 16 15 23 23 H 1.09001 * 109.47420 * 174.93767 * 1 2 3 24 24 H 1.08997 * 109.47283 * 54.93888 * 1 2 3 25 25 H 1.09000 * 109.47011 * 294.93687 * 1 2 3 26 26 H 1.09003 * 109.46961 * 120.00586 * 2 1 3 27 27 H 1.09009 * 109.47170 * 70.10355 * 3 2 1 28 28 H 1.09001 * 109.47364 * 190.09864 * 3 2 1 29 29 H 1.08995 * 109.47637 * 310.10631 * 3 2 1 30 30 H 0.97006 * 120.00426 * 180.02562 * 9 8 6 31 31 H 1.07987 * 125.87762 * 359.97438 * 15 14 4 32 32 H 1.09001 * 109.72212 * 283.91046 * 19 18 14 33 33 H 1.09007 * 109.71585 * 44.56690 * 19 18 14 34 34 H 1.08999 * 109.51534 * 168.47786 * 20 19 18 35 35 H 1.09000 * 109.52169 * 288.65193 * 20 19 18 36 36 H 1.09004 * 109.45873 * 50.58632 * 21 20 19 37 37 H 1.09003 * 109.45645 * 170.53022 * 21 20 19 38 38 H 1.08993 * 109.58169 * 42.85998 * 22 17 16 39 39 H 1.09006 * 109.69289 * 282.51996 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2493 5 1 1.6860 -1.7521 -1.2436 6 6 3.5469 -0.7075 -1.2572 7 1 4.0779 -0.1775 -2.0341 8 6 4.2475 -1.3717 -0.2729 9 7 3.6058 -2.1055 0.6098 10 14 6.1083 -1.2293 -0.1931 11 1 6.5852 -0.3515 -1.2920 12 1 6.5046 -0.6463 1.1140 13 1 6.7147 -2.5771 -0.3382 14 6 1.5247 -0.0200 -2.4797 15 6 1.8756 1.2682 -2.9032 16 7 1.2277 1.5260 -4.0125 17 7 0.4393 0.4161 -4.3235 18 6 0.6399 -0.5181 -3.3655 19 6 -0.0343 -1.8675 -3.3388 20 6 -1.2257 -1.8265 -4.3047 21 6 -0.7684 -1.2402 -5.6436 22 6 -0.4571 0.2503 -5.4714 23 1 -0.3634 -1.0236 -0.0907 24 1 -0.3634 0.5903 -0.8412 25 1 -0.3633 0.4333 0.9319 26 1 1.8933 -0.5139 0.8900 27 1 1.8314 1.9016 0.9664 28 1 3.1150 1.4478 -0.1802 29 1 1.5370 2.0057 -0.7859 30 1 4.0986 -2.5725 1.3026 31 1 2.5640 1.9332 -2.4031 32 1 0.6699 -2.6368 -3.6558 33 1 -0.3859 -2.0831 -2.3298 34 1 -1.6037 -2.8370 -4.4598 35 1 -2.0142 -1.2024 -3.8842 36 1 0.1274 -1.7616 -5.9812 37 1 -1.5599 -1.3628 -6.3829 38 1 0.0278 0.6286 -6.3712 39 1 -1.3827 0.7990 -5.2969 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259925389.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:03 Heat of formation + Delta-G solvation = 35.314794 kcal Electronic energy + Delta-G solvation = -19103.437670 eV Core-core repulsion = 16431.977687 eV Total energy + Delta-G solvation = -2671.459983 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.33532 -37.99413 -36.91671 -34.00500 -33.08020 -31.09305 -30.12657 -27.89815 -27.57538 -25.05582 -24.74607 -22.93821 -21.56719 -20.36997 -19.25361 -18.15028 -16.92548 -16.68420 -16.22144 -15.53031 -15.33409 -15.13427 -14.92294 -14.63201 -14.36650 -14.24001 -13.83419 -13.28881 -13.13937 -12.80858 -12.76749 -12.59144 -12.50907 -12.18751 -11.90276 -11.85599 -11.70881 -11.59465 -11.42789 -11.24300 -10.90957 -10.73095 -10.28780 -9.85702 -8.82692 -7.99425 -6.05673 1.12987 1.41159 1.45186 1.54622 1.84589 2.15802 2.52135 3.29844 3.62365 3.82586 3.92309 3.95850 4.26588 4.41587 4.51055 4.55041 4.60886 4.65603 4.67775 4.87782 4.91561 4.96201 4.99027 5.03660 5.10812 5.15189 5.21266 5.28238 5.33576 5.35063 5.47570 5.69564 5.79295 5.83898 5.97259 6.12796 6.23950 6.40197 6.56737 7.00838 7.04379 7.58578 9.06574 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.025270 B = 0.007476 C = 0.007314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.754922 B = 3744.227973 C = 3827.207313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.081 4.081 3 C -0.126 4.126 4 C 0.129 3.871 5 H 0.005 0.995 6 C -0.502 4.502 7 H 0.041 0.959 8 C 0.021 3.979 9 N -0.915 5.915 10 Si 0.935 3.065 11 H -0.273 1.273 12 H -0.281 1.281 13 H -0.285 1.285 14 C -0.196 4.196 15 C 0.042 3.958 16 N -0.336 5.336 17 N -0.379 5.379 18 C 0.057 3.943 19 C -0.055 4.055 20 C -0.116 4.116 21 C -0.126 4.126 22 C 0.126 3.874 23 H 0.040 0.960 24 H 0.039 0.961 25 H 0.047 0.953 26 H 0.052 0.948 27 H 0.037 0.963 28 H 0.045 0.955 29 H 0.049 0.951 30 H 0.258 0.742 31 H 0.174 0.826 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.100 0.900 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.125 0.875 38 H 0.092 0.908 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.752 1.064 -9.250 14.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.100 4.100 3 C -0.183 4.183 4 C 0.109 3.891 5 H 0.023 0.977 6 C -0.541 4.541 7 H 0.060 0.940 8 C -0.177 4.177 9 N -0.555 5.555 10 Si 0.762 3.238 11 H -0.198 1.198 12 H -0.207 1.207 13 H -0.211 1.211 14 C -0.207 4.207 15 C -0.142 4.142 16 N -0.158 5.158 17 N -0.165 5.165 18 C -0.069 4.069 19 C -0.094 4.094 20 C -0.154 4.154 21 C -0.165 4.165 22 C 0.006 3.994 23 H 0.059 0.941 24 H 0.058 0.942 25 H 0.066 0.934 26 H 0.071 0.929 27 H 0.056 0.944 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.191 0.809 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.119 0.881 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.143 0.857 38 H 0.110 0.890 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -11.025 1.830 -10.175 15.113 hybrid contribution 1.688 -0.481 1.107 2.075 sum -9.336 1.349 -9.067 13.084 Atomic orbital electron populations 1.21690 0.96588 1.00033 0.99854 1.20921 0.93333 0.95740 1.00021 1.21775 1.00881 0.96360 0.99256 1.16989 0.92921 0.92102 0.87081 0.97697 1.21356 0.92412 1.30803 1.09524 0.94030 1.25497 1.01166 0.95098 0.95947 1.70035 1.36261 1.31613 1.17591 0.85853 0.82547 0.77561 0.77800 1.19775 1.20681 1.21112 1.20189 1.02747 0.96086 1.01652 1.23846 0.99626 0.97188 0.93558 1.77015 1.11455 1.09436 1.17887 1.48718 1.35620 1.10975 1.21162 1.21062 1.00105 0.94314 0.91416 1.20430 0.97284 0.89915 1.01730 1.21658 0.96206 1.03385 0.94114 1.21950 1.03499 0.91985 0.99017 1.22038 0.92169 0.99396 0.85816 0.94066 0.94176 0.93425 0.92942 0.94414 0.93557 0.93245 0.93291 0.80884 0.90463 0.90210 0.88121 0.91152 0.91578 0.85724 0.89014 0.89185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.88 8.82 71.98 0.64 -4.24 16 2 C -0.08 -3.74 2.58 -10.79 -0.03 -3.77 16 3 C -0.13 -5.33 7.79 71.98 0.56 -4.77 16 4 C 0.13 6.36 1.87 -12.28 -0.02 6.34 16 5 H 0.00 0.27 7.49 -2.39 -0.02 0.25 16 6 C -0.50 -27.41 6.86 25.60 0.18 -27.24 16 7 H 0.04 2.33 7.53 -2.91 -0.02 2.30 16 8 C 0.02 1.17 5.26 84.65 0.45 1.61 16 9 N -0.91 -52.21 11.90 21.44 0.26 -51.95 16 10 Si 0.94 44.07 29.54 68.60 2.03 46.09 16 11 H -0.27 -12.72 7.11 99.48 0.71 -12.02 16 12 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 13 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 14 C -0.20 -8.63 3.49 -20.22 -0.07 -8.70 16 15 C 0.04 1.79 9.34 85.26 0.80 2.58 16 16 N -0.34 -13.60 12.62 -56.80 -0.72 -14.32 16 17 N -0.38 -13.24 4.04 -334.11 -1.35 -14.59 16 18 C 0.06 2.16 6.59 41.28 0.27 2.43 16 19 C -0.05 -1.66 5.67 30.05 0.17 -1.49 16 20 C -0.12 -2.31 5.97 30.79 0.18 -2.13 16 21 C -0.13 -2.22 5.93 30.72 0.18 -2.04 16 22 C 0.13 2.91 7.28 86.44 0.63 3.54 16 23 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 24 H 0.04 1.54 7.36 -2.39 -0.02 1.52 16 25 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.05 2.77 6.66 -2.39 -0.02 2.75 16 27 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 28 H 0.05 2.11 6.85 -2.39 -0.02 2.09 16 29 H 0.05 1.97 5.64 -2.39 -0.01 1.95 16 30 H 0.26 14.10 8.31 -92.70 -0.77 13.32 16 31 H 0.17 7.26 6.77 -2.92 -0.02 7.24 16 32 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 33 H 0.08 2.53 8.06 -2.38 -0.02 2.51 16 34 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.07 1.37 8.12 -2.39 -0.02 1.35 16 36 H 0.07 1.30 8.12 -2.38 -0.02 1.28 16 37 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 Total: -1.00 -64.64 302.92 5.16 -59.49 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: 1.01 Total: 13.15 kcal Atomic # 6 Polarization: -41.79 SS G_CDS: 3.93 Total: -37.86 kcal Atomic # 7 Polarization: -79.05 SS G_CDS: -1.81 Total: -80.86 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.09 kcal Total: -64.64 5.16 -59.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259925389.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.800 kcal (2) G-P(sol) polarization free energy of solvation -64.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds