Wall clock time and date at job start Mon Mar 30 2020 05:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34679 * 126.58996 * 2 1 4 4 N 1.34120 * 108.01670 * 180.28213 * 3 2 1 5 5 C 1.30497 * 109.26058 * 359.73628 * 4 3 2 6 6 C 1.50707 * 125.65148 * 180.02562 * 5 4 3 7 7 C 1.50700 * 109.46519 * 269.95435 * 6 5 4 8 8 H 1.08002 * 120.00746 * 0.02562 * 7 6 5 9 9 C 1.37886 * 119.99547 * 179.97438 * 7 6 5 10 10 N 1.31513 * 119.99927 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99922 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47037 * 59.99728 * 11 9 7 13 13 H 1.48497 * 109.46899 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.47081 * 300.00069 * 11 9 7 15 15 N 1.35044 * 108.69915 * 359.97438 * 5 4 3 16 16 C 1.46502 * 126.39910 * 179.97438 * 15 5 4 17 17 C 1.52995 * 109.46968 * 126.64471 * 16 15 5 18 18 C 1.53002 * 109.47213 * 180.02562 * 17 16 15 19 19 C 1.52998 * 109.47004 * 300.00492 * 18 17 16 20 20 C 1.52998 * 109.47407 * 60.00067 * 19 18 17 21 21 C 1.52998 * 109.47176 * 246.64918 * 16 15 5 22 22 H 1.08997 * 109.47392 * 265.02478 * 1 2 3 23 23 H 1.09001 * 109.47245 * 25.02760 * 1 2 3 24 24 H 1.09001 * 109.47196 * 145.02636 * 1 2 3 25 25 H 1.08001 * 125.98896 * 0.05370 * 3 2 1 26 26 H 1.08994 * 109.47039 * 29.95172 * 6 5 4 27 27 H 1.09002 * 109.47110 * 149.95648 * 6 5 4 28 28 H 0.97003 * 120.00104 * 179.97438 * 10 9 7 29 29 H 1.09000 * 109.46757 * 6.64807 * 16 15 5 30 30 H 1.09000 * 109.47107 * 60.00551 * 17 16 15 31 31 H 1.09002 * 109.47366 * 300.00391 * 17 16 15 32 32 H 1.09001 * 109.47254 * 179.97438 * 18 17 16 33 33 H 1.09000 * 109.46683 * 60.00231 * 18 17 16 34 34 H 1.09005 * 109.46863 * 179.97438 * 19 18 17 35 35 H 1.09000 * 109.47188 * 299.99431 * 19 18 17 36 36 H 1.09000 * 109.47466 * 59.99534 * 20 19 18 37 37 H 1.09002 * 109.47236 * 179.97438 * 20 19 18 38 38 H 1.08994 * 109.47083 * 60.00117 * 21 16 15 39 39 H 1.09000 * 109.47188 * 299.99626 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3098 1.0814 0.0000 4 7 3.5811 0.6542 -0.0063 5 6 3.5968 -0.6507 -0.0045 6 6 4.8319 -1.5143 -0.0094 7 6 5.2357 -1.8051 -1.4319 8 1 4.6563 -1.4042 -2.2505 9 6 6.3456 -2.5820 -1.6883 10 7 7.0520 -3.0688 -0.6915 11 14 6.8467 -2.9418 -3.4515 12 1 7.1316 -1.6657 -4.1554 13 1 8.0635 -3.7929 -3.4564 14 1 5.7427 -3.6535 -4.1444 15 7 2.3230 -1.0990 0.0036 16 6 1.8943 -2.4999 0.0076 17 6 0.9289 -2.7345 1.1710 18 6 0.4817 -4.1977 1.1756 19 6 -0.2220 -4.5200 -0.1441 20 6 0.7435 -4.2855 -1.3075 21 6 1.1905 -2.8216 -1.3122 22 1 -0.3634 -0.0891 1.0237 23 1 -0.3634 0.9312 -0.4348 24 1 -0.3633 -0.8421 -0.5891 25 1 1.9864 2.1118 0.0008 26 1 5.6424 -0.9921 0.4989 27 1 4.6224 -2.4509 0.5075 28 1 7.8326 -3.6157 -0.8719 29 1 2.7649 -3.1458 0.1220 30 1 0.0583 -2.0885 1.0566 31 1 1.4304 -2.5052 2.1113 32 1 -0.2058 -4.3649 2.0048 33 1 1.3524 -4.8432 1.2903 34 1 -0.5402 -5.5626 -0.1410 35 1 -1.0927 -3.8744 -0.2587 36 1 1.6143 -4.9311 -1.1929 37 1 0.2423 -4.5156 -2.2477 38 1 1.8783 -2.6545 -2.1410 39 1 0.3199 -2.1757 -1.4266 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259939968.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:38 Heat of formation + Delta-G solvation = 25.979860 kcal Electronic energy + Delta-G solvation = -18863.923370 eV Core-core repulsion = 16192.058594 eV Total energy + Delta-G solvation = -2671.864776 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.48886 -38.17770 -33.43082 -33.09833 -31.60757 -30.74441 -28.96065 -28.61251 -25.22630 -22.94068 -22.67135 -22.59077 -20.37691 -19.20385 -18.68461 -16.43769 -16.13591 -15.11697 -14.62156 -14.49118 -14.25796 -14.19729 -13.39884 -13.09874 -12.98513 -12.72864 -12.43503 -12.23325 -12.16855 -12.06528 -11.73148 -11.38647 -11.05633 -11.00751 -10.77899 -10.68383 -10.49451 -10.26772 -10.19299 -9.88704 -9.46883 -8.95995 -8.72816 -8.45832 -7.30112 -6.07297 -4.11024 2.81581 3.30597 3.35079 3.38949 3.48018 4.05926 4.44361 4.67830 4.79047 4.89975 5.08965 5.23764 5.26610 5.30628 5.39973 5.46875 5.50757 5.56782 5.64448 5.68266 5.75286 5.78784 5.94589 6.02713 6.02829 6.13676 6.15041 6.23597 6.29292 6.38294 6.43416 6.53397 7.15862 7.36320 7.48573 7.66729 7.87614 8.06042 8.30292 8.90989 9.11516 9.52415 11.02215 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.018400 B = 0.008380 C = 0.006661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.364942 B = 3340.404100 C = 4202.490273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.063 4.063 3 C -0.034 4.034 4 N -0.510 5.510 5 C 0.263 3.737 6 C 0.096 3.904 7 C -0.509 4.509 8 H 0.055 0.945 9 C 0.062 3.938 10 N -0.893 5.893 11 Si 0.897 3.103 12 H -0.275 1.275 13 H -0.286 1.286 14 H -0.277 1.277 15 N -0.449 5.449 16 C 0.139 3.861 17 C -0.131 4.131 18 C -0.116 4.116 19 C -0.120 4.120 20 C -0.117 4.117 21 C -0.128 4.128 22 H 0.060 0.940 23 H 0.070 0.930 24 H 0.061 0.939 25 H 0.154 0.846 26 H 0.050 0.950 27 H 0.031 0.969 28 H 0.264 0.736 29 H 0.109 0.891 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.075 0.925 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.776 -2.673 2.093 16.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.177 4.177 3 C -0.183 4.183 4 N -0.228 5.228 5 C 0.001 3.999 6 C 0.057 3.943 7 C -0.548 4.548 8 H 0.074 0.926 9 C -0.140 4.140 10 N -0.532 5.532 11 Si 0.724 3.276 12 H -0.201 1.201 13 H -0.211 1.211 14 H -0.203 1.203 15 N -0.132 5.132 16 C 0.036 3.964 17 C -0.169 4.169 18 C -0.154 4.154 19 C -0.157 4.157 20 C -0.155 4.155 21 C -0.166 4.166 22 H 0.079 0.921 23 H 0.089 0.911 24 H 0.080 0.920 25 H 0.172 0.828 26 H 0.068 0.932 27 H 0.050 0.950 28 H 0.073 0.927 29 H 0.127 0.873 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.094 0.906 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -14.967 -2.394 2.144 15.308 hybrid contribution -0.348 -0.592 -0.994 1.208 sum -15.315 -2.986 1.149 15.645 Atomic orbital electron populations 1.20232 0.88729 1.02371 1.01375 1.20861 0.93697 0.87584 1.15537 1.21923 0.89430 0.97583 1.09331 1.70315 1.21142 1.08991 1.22329 1.24451 0.86166 0.90683 0.98631 1.17823 0.86110 0.91801 0.98565 1.20888 1.11515 1.31326 0.91075 0.92642 1.24946 0.96017 0.95694 0.97351 1.69933 1.17869 1.34551 1.30823 0.86576 0.77905 0.78387 0.84724 1.20058 1.21140 1.20265 1.45423 1.06812 1.05757 1.55191 1.21360 0.98948 0.80629 0.95508 1.21980 0.99429 0.97362 0.98127 1.21497 1.00591 0.95811 0.97493 1.21567 0.98281 1.01093 0.94772 1.21514 0.99563 0.96155 0.98247 1.21933 1.00556 0.96727 0.97371 0.92125 0.91084 0.91994 0.82824 0.93165 0.95048 0.92658 0.87305 0.90966 0.91494 0.91716 0.91408 0.91939 0.92160 0.91213 0.91692 0.90612 0.91558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.89 8.52 36.01 0.31 -0.58 16 2 C -0.06 -1.14 6.48 -81.60 -0.53 -1.67 16 3 C -0.03 -0.69 11.79 -17.81 -0.21 -0.90 16 4 N -0.51 -12.43 11.25 -10.81 -0.12 -12.55 16 5 C 0.26 6.32 7.09 -155.41 -1.10 5.22 16 6 C 0.10 2.53 5.17 -29.03 -0.15 2.38 16 7 C -0.51 -14.36 9.09 -34.44 -0.31 -14.68 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 9 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 10 N -0.89 -25.96 13.29 55.43 0.74 -25.23 16 11 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 14 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 15 N -0.45 -8.90 2.61 -102.32 -0.27 -9.17 16 16 C 0.14 2.31 2.66 -67.93 -0.18 2.13 16 17 C -0.13 -1.74 5.15 -26.73 -0.14 -1.87 16 18 C -0.12 -1.26 5.92 -26.73 -0.16 -1.42 16 19 C -0.12 -1.22 5.92 -26.73 -0.16 -1.37 16 20 C -0.12 -1.41 5.93 -26.70 -0.16 -1.57 16 21 C -0.13 -1.89 5.31 -26.70 -0.14 -2.04 16 22 H 0.06 0.70 7.59 -51.93 -0.39 0.30 16 23 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.06 0.75 5.20 -51.93 -0.27 0.48 16 25 H 0.15 2.60 8.06 -52.49 -0.42 2.18 16 26 H 0.05 1.44 8.14 -51.93 -0.42 1.02 16 27 H 0.03 0.83 6.99 -51.93 -0.36 0.46 16 28 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 29 H 0.11 2.05 6.64 -51.93 -0.34 1.70 16 30 H 0.07 0.89 5.31 -51.93 -0.28 0.61 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 39 H 0.07 0.91 5.58 -51.93 -0.29 0.62 16 LS Contribution 305.34 15.07 4.60 4.60 Total: -1.00 -31.16 305.34 -9.23 -40.39 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -6.13 Total: 0.14 kcal Atomic # 6 Polarization: -11.71 SS G_CDS: -3.03 Total: -14.74 kcal Atomic # 7 Polarization: -47.30 SS G_CDS: 0.35 Total: -46.95 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.16 -9.23 -40.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259939968.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.370 kcal (2) G-P(sol) polarization free energy of solvation -31.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds