Wall clock time and date at job start Mon Mar 30 2020 05:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34679 * 126.58996 * 2 1 4 4 N 1.34120 * 108.01670 * 180.28213 * 3 2 1 5 5 C 1.30497 * 109.26058 * 359.73628 * 4 3 2 6 6 C 1.50707 * 125.65148 * 180.02562 * 5 4 3 7 7 C 1.50700 * 109.46519 * 269.95435 * 6 5 4 8 8 H 1.08002 * 120.00746 * 0.02562 * 7 6 5 9 9 C 1.37886 * 119.99547 * 179.97438 * 7 6 5 10 10 N 1.31513 * 119.99927 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99922 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47037 * 59.99728 * 11 9 7 13 13 H 1.48497 * 109.46899 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.47081 * 300.00069 * 11 9 7 15 15 N 1.35044 * 108.69915 * 359.97438 * 5 4 3 16 16 C 1.46502 * 126.39910 * 179.97438 * 15 5 4 17 17 C 1.52995 * 109.46968 * 126.64471 * 16 15 5 18 18 C 1.53002 * 109.47213 * 180.02562 * 17 16 15 19 19 C 1.52998 * 109.47004 * 300.00492 * 18 17 16 20 20 C 1.52998 * 109.47407 * 60.00067 * 19 18 17 21 21 C 1.52998 * 109.47176 * 246.64918 * 16 15 5 22 22 H 1.08997 * 109.47392 * 265.02478 * 1 2 3 23 23 H 1.09001 * 109.47245 * 25.02760 * 1 2 3 24 24 H 1.09001 * 109.47196 * 145.02636 * 1 2 3 25 25 H 1.08001 * 125.98896 * 0.05370 * 3 2 1 26 26 H 1.08994 * 109.47039 * 29.95172 * 6 5 4 27 27 H 1.09002 * 109.47110 * 149.95648 * 6 5 4 28 28 H 0.97003 * 120.00104 * 179.97438 * 10 9 7 29 29 H 1.09000 * 109.46757 * 6.64807 * 16 15 5 30 30 H 1.09000 * 109.47107 * 60.00551 * 17 16 15 31 31 H 1.09002 * 109.47366 * 300.00391 * 17 16 15 32 32 H 1.09001 * 109.47254 * 179.97438 * 18 17 16 33 33 H 1.09000 * 109.46683 * 60.00231 * 18 17 16 34 34 H 1.09005 * 109.46863 * 179.97438 * 19 18 17 35 35 H 1.09000 * 109.47188 * 299.99431 * 19 18 17 36 36 H 1.09000 * 109.47466 * 59.99534 * 20 19 18 37 37 H 1.09002 * 109.47236 * 179.97438 * 20 19 18 38 38 H 1.08994 * 109.47083 * 60.00117 * 21 16 15 39 39 H 1.09000 * 109.47188 * 299.99626 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3098 1.0814 0.0000 4 7 3.5811 0.6542 -0.0063 5 6 3.5968 -0.6507 -0.0045 6 6 4.8319 -1.5143 -0.0094 7 6 5.2357 -1.8051 -1.4319 8 1 4.6563 -1.4042 -2.2505 9 6 6.3456 -2.5820 -1.6883 10 7 7.0520 -3.0688 -0.6915 11 14 6.8467 -2.9418 -3.4515 12 1 7.1316 -1.6657 -4.1554 13 1 8.0635 -3.7929 -3.4564 14 1 5.7427 -3.6535 -4.1444 15 7 2.3230 -1.0990 0.0036 16 6 1.8943 -2.4999 0.0076 17 6 0.9289 -2.7345 1.1710 18 6 0.4817 -4.1977 1.1756 19 6 -0.2220 -4.5200 -0.1441 20 6 0.7435 -4.2855 -1.3075 21 6 1.1905 -2.8216 -1.3122 22 1 -0.3634 -0.0891 1.0237 23 1 -0.3634 0.9312 -0.4348 24 1 -0.3633 -0.8421 -0.5891 25 1 1.9864 2.1118 0.0008 26 1 5.6424 -0.9921 0.4989 27 1 4.6224 -2.4509 0.5075 28 1 7.8326 -3.6157 -0.8719 29 1 2.7649 -3.1458 0.1220 30 1 0.0583 -2.0885 1.0566 31 1 1.4304 -2.5052 2.1113 32 1 -0.2058 -4.3649 2.0048 33 1 1.3524 -4.8432 1.2903 34 1 -0.5402 -5.5626 -0.1410 35 1 -1.0927 -3.8744 -0.2587 36 1 1.6143 -4.9311 -1.1929 37 1 0.2423 -4.5156 -2.2477 38 1 1.8783 -2.6545 -2.1410 39 1 0.3199 -2.1757 -1.4266 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259939968.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:47:38 Heat of formation + Delta-G solvation = 8.697615 kcal Electronic energy + Delta-G solvation = -18864.672785 eV Core-core repulsion = 16192.058594 eV Total energy + Delta-G solvation = -2672.614190 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.07537 -39.32153 -35.53795 -34.46197 -33.23209 -31.78362 -30.72502 -29.94278 -26.95177 -24.88319 -23.89357 -23.62878 -21.73651 -20.55488 -20.15188 -18.62244 -17.68053 -16.58215 -16.30868 -16.07887 -15.28002 -15.21471 -14.77766 -14.47068 -14.42522 -14.25227 -13.87123 -13.66406 -13.38750 -13.27322 -13.20311 -13.19247 -12.70519 -12.65672 -12.12224 -12.05827 -11.91983 -11.62325 -11.49312 -11.34699 -11.31605 -10.67018 -10.61122 -10.27643 -8.93069 -8.24394 -6.39328 1.24365 1.36144 1.39071 1.47541 1.99698 2.28416 2.44506 3.04866 3.52567 3.71551 3.83360 3.94895 4.01175 4.11546 4.20162 4.31755 4.34285 4.47389 4.48750 4.59387 4.66061 4.68491 4.80913 4.89518 4.96945 5.02780 5.14079 5.16301 5.17948 5.21683 5.30294 5.32607 5.35465 5.50580 5.63349 5.74113 5.99498 6.10435 6.49778 6.66732 7.28642 7.42863 8.83473 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.018400 B = 0.008380 C = 0.006661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.364942 B = 3340.404100 C = 4202.490273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.036 4.036 3 C -0.067 4.067 4 N -0.545 5.545 5 C 0.218 3.782 6 C 0.112 3.888 7 C -0.526 4.526 8 H 0.043 0.957 9 C 0.014 3.986 10 N -0.923 5.923 11 Si 0.964 3.036 12 H -0.275 1.275 13 H -0.273 1.273 14 H -0.264 1.264 15 N -0.444 5.444 16 C 0.131 3.869 17 C -0.122 4.122 18 C -0.114 4.114 19 C -0.113 4.113 20 C -0.115 4.115 21 C -0.121 4.121 22 H 0.085 0.915 23 H 0.096 0.904 24 H 0.076 0.924 25 H 0.183 0.817 26 H 0.012 0.988 27 H 0.019 0.981 28 H 0.269 0.731 29 H 0.072 0.928 30 H 0.093 0.907 31 H 0.052 0.948 32 H 0.091 0.909 33 H 0.054 0.946 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.052 0.948 37 H 0.083 0.917 38 H 0.038 0.962 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.208 -3.267 1.347 19.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.151 4.151 3 C -0.215 4.215 4 N -0.264 5.264 5 C -0.045 4.045 6 C 0.073 3.927 7 C -0.564 4.564 8 H 0.061 0.939 9 C -0.185 4.185 10 N -0.562 5.562 11 Si 0.788 3.212 12 H -0.200 1.200 13 H -0.198 1.198 14 H -0.189 1.189 15 N -0.126 5.126 16 C 0.029 3.971 17 C -0.160 4.160 18 C -0.152 4.152 19 C -0.150 4.150 20 C -0.153 4.153 21 C -0.159 4.159 22 H 0.104 0.896 23 H 0.115 0.885 24 H 0.095 0.905 25 H 0.200 0.800 26 H 0.030 0.970 27 H 0.037 0.963 28 H 0.078 0.922 29 H 0.090 0.910 30 H 0.112 0.888 31 H 0.071 0.929 32 H 0.110 0.890 33 H 0.073 0.927 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.070 0.930 37 H 0.101 0.899 38 H 0.057 0.943 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -18.410 -3.009 1.405 18.707 hybrid contribution 0.680 -0.360 -0.715 1.050 sum -17.730 -3.370 0.691 18.061 Atomic orbital electron populations 1.20466 0.84141 1.04463 1.03491 1.21747 0.96119 0.85990 1.11219 1.22502 0.88243 0.99742 1.10973 1.70158 1.24157 1.09442 1.22679 1.23722 0.87100 0.90704 1.02945 1.17371 0.86725 0.91265 0.97339 1.21038 1.12050 1.31881 0.91471 0.93881 1.25813 0.95677 0.95108 1.01912 1.70042 1.18240 1.34859 1.33074 0.85519 0.78159 0.78320 0.79199 1.20022 1.19817 1.18899 1.45598 1.05747 1.07557 1.53666 1.21618 0.98672 0.78374 0.98465 1.21959 0.98793 0.99713 0.95503 1.21527 1.00804 0.93533 0.99292 1.21554 0.97880 1.02862 0.92695 1.21533 0.99736 0.93520 1.00473 1.21896 1.00066 0.99328 0.94619 0.89643 0.88524 0.90532 0.79950 0.96954 0.96321 0.92208 0.90965 0.88844 0.92922 0.89031 0.92749 0.89911 0.90190 0.92961 0.89854 0.94278 0.89491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.45 8.52 71.24 0.61 -0.84 16 2 C -0.04 -1.24 6.48 40.95 0.27 -0.97 16 3 C -0.07 -2.69 11.79 83.53 0.98 -1.71 16 4 N -0.55 -27.68 11.25 -188.12 -2.12 -29.79 16 5 C 0.22 11.06 7.09 138.13 0.98 12.04 16 6 C 0.11 6.40 5.17 29.10 0.15 6.55 16 7 C -0.53 -31.37 9.09 25.60 0.23 -31.14 16 8 H 0.04 2.61 7.74 -2.91 -0.02 2.59 16 9 C 0.01 0.82 5.46 84.66 0.46 1.29 16 10 N -0.92 -55.71 13.29 21.45 0.28 -55.42 16 11 Si 0.96 45.12 29.54 68.60 2.03 47.15 16 12 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 13 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 14 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 15 N -0.44 -17.90 2.61 -477.62 -1.25 -19.15 16 16 C 0.13 4.40 2.66 44.99 0.12 4.52 16 17 C -0.12 -3.01 5.15 30.59 0.16 -2.85 16 18 C -0.11 -2.17 5.92 30.59 0.18 -1.99 16 19 C -0.11 -1.85 5.92 30.59 0.18 -1.67 16 20 C -0.11 -2.55 5.93 30.61 0.18 -2.36 16 21 C -0.12 -3.48 5.31 30.61 0.16 -3.32 16 22 H 0.09 1.50 7.59 -2.39 -0.02 1.48 16 23 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 24 H 0.08 1.45 5.20 -2.39 -0.01 1.44 16 25 H 0.18 5.90 8.06 -2.91 -0.02 5.87 16 26 H 0.01 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.02 1.08 6.99 -2.39 -0.02 1.06 16 28 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 29 H 0.07 2.93 6.64 -2.39 -0.02 2.92 16 30 H 0.09 1.91 5.31 -2.39 -0.01 1.90 16 31 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 35 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.09 2.11 5.58 -2.39 -0.01 2.10 16 Total: -1.00 -72.52 305.34 4.64 -67.89 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: 1.02 Total: 11.78 kcal Atomic # 6 Polarization: -27.12 SS G_CDS: 4.67 Total: -22.45 kcal Atomic # 7 Polarization: -101.29 SS G_CDS: -3.08 Total: -104.36 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -72.52 4.64 -67.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259939968.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.583 kcal (2) G-P(sol) polarization free energy of solvation -72.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds