Wall clock time and date at job start Mon Mar 30 2020 05:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30788 * 125.71802 * 2 1 4 4 C 1.34428 * 109.31624 * 179.97438 * 3 2 1 5 5 C 1.50709 * 126.09827 * 179.97438 * 4 3 2 6 6 C 1.52994 * 109.47213 * 90.02128 * 5 4 3 7 7 C 1.50699 * 109.47115 * 179.97438 * 6 5 4 8 8 H 1.07997 * 119.99843 * 0.02562 * 7 6 5 9 9 C 1.37883 * 119.99880 * 180.02562 * 7 6 5 10 10 N 1.31518 * 119.99915 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99938 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47039 * 59.99222 * 11 9 7 13 13 H 1.48493 * 109.47079 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.47007 * 299.99914 * 11 9 7 15 15 C 1.33860 * 107.80042 * 0.02562 * 4 3 2 16 16 N 1.34404 * 125.72822 * 180.02562 * 2 1 3 17 17 C 1.46477 * 128.44371 * 0.14238 * 16 2 1 18 18 C 1.53284 * 108.69381 * 162.71415 * 17 16 2 19 19 H 1.09002 * 109.43186 * 290.69029 * 18 17 16 20 20 C 1.52997 * 109.43236 * 170.78445 * 18 17 16 21 21 C 1.53120 * 109.70501 * 50.76433 * 18 17 16 22 22 C 1.50706 * 128.67896 * 180.16202 * 15 4 3 23 23 H 1.08996 * 109.47143 * 269.97212 * 1 2 3 24 24 H 1.08998 * 109.47411 * 29.97661 * 1 2 3 25 25 H 1.09000 * 109.47093 * 149.97317 * 1 2 3 26 26 H 1.08991 * 109.46637 * 210.02645 * 5 4 3 27 27 H 1.09000 * 109.46520 * 330.02291 * 5 4 3 28 28 H 1.09005 * 109.47563 * 300.00371 * 6 5 4 29 29 H 1.09004 * 109.46867 * 60.00275 * 6 5 4 30 30 H 0.96998 * 119.99372 * 180.02562 * 10 9 7 31 31 H 1.08997 * 109.60099 * 42.94986 * 17 16 2 32 32 H 1.08996 * 109.59845 * 282.47618 * 17 16 2 33 33 H 1.09006 * 109.47058 * 59.90791 * 20 18 17 34 34 H 1.09001 * 109.47450 * 179.90531 * 20 18 17 35 35 H 1.09002 * 109.47572 * 299.90549 * 20 18 17 36 36 H 1.09001 * 109.49821 * 50.02886 * 21 18 17 37 37 H 1.08990 * 109.50178 * 170.13354 * 21 18 17 38 38 H 1.09005 * 109.74701 * 283.83867 * 22 15 4 39 39 H 1.09004 * 109.74515 * 44.50959 * 22 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2705 1.0619 0.0000 4 6 3.5601 0.6823 0.0006 5 6 4.7558 1.5997 0.0002 6 6 5.1604 1.9108 1.4425 7 6 6.3563 2.8277 1.4422 8 1 6.7847 3.1560 0.5067 9 6 6.9036 3.2473 2.6361 10 7 6.3816 2.8478 3.7752 11 14 8.3857 4.3844 2.6357 12 1 8.0401 5.6476 1.9356 13 1 8.7784 4.6862 4.0355 14 1 9.5163 3.7238 1.9353 15 6 3.5928 -0.6559 0.0004 16 7 2.2918 -1.0911 -0.0005 17 6 1.8923 -2.5003 -0.0040 18 6 3.0930 -3.3503 -0.4346 19 1 3.3048 -3.1710 -1.4887 20 6 2.7698 -4.8310 -0.2251 21 6 4.3187 -2.9741 0.4026 22 6 4.7919 -1.5688 0.0041 23 1 -0.3633 -0.0005 1.0276 24 1 -0.3634 0.8902 -0.5134 25 1 -0.3633 -0.8897 -0.5142 26 1 5.5857 1.1147 -0.5135 27 1 4.5021 2.5268 -0.5140 28 1 4.3303 2.3958 1.9563 29 1 5.4139 0.9837 1.9567 30 1 6.7665 3.1434 4.6151 31 1 1.0709 -2.6458 -0.7055 32 1 1.5772 -2.7935 0.9974 33 1 1.8986 -5.1008 -0.8222 34 1 3.6226 -5.4362 -0.5327 35 1 2.5578 -5.0111 0.8289 36 1 4.0541 -2.9842 1.4599 37 1 5.1181 -3.6921 0.2202 38 1 5.2369 -1.5963 -0.9906 39 1 5.5257 -1.2098 0.7259 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259963899.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:47 Heat of formation + Delta-G solvation = 24.981761 kcal Electronic energy + Delta-G solvation = -18195.086987 eV Core-core repulsion = 15523.178931 eV Total energy + Delta-G solvation = -2671.908057 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.97840 -37.27258 -34.37129 -32.74962 -31.89949 -30.71389 -29.98866 -26.70017 -26.37761 -24.36953 -22.96308 -21.45845 -20.42423 -19.47077 -18.59390 -16.37023 -15.93890 -15.74388 -14.78599 -14.42915 -14.33709 -13.95076 -13.63962 -13.18959 -12.98266 -12.67151 -12.55113 -12.49253 -12.25950 -12.06243 -11.89441 -11.49703 -11.10835 -10.88118 -10.82651 -10.80936 -10.69004 -10.54658 -9.75930 -9.60111 -9.23941 -8.96221 -8.82677 -8.22108 -7.45492 -5.87808 -3.89895 2.47099 3.07093 3.40999 3.44744 3.47581 3.68730 4.31587 4.46431 4.55744 4.63680 4.78190 5.02156 5.10140 5.15591 5.22829 5.31455 5.41499 5.45572 5.47451 5.59814 5.62984 5.74674 5.80760 5.85804 5.92383 5.99056 6.19378 6.22531 6.26804 6.76357 6.87682 6.89871 7.14130 7.46681 7.68194 7.83856 8.01840 8.15855 8.55434 8.69820 9.17573 9.72951 11.23445 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.027651 B = 0.005336 C = 0.004761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.386772 B = 5246.264124 C = 5880.130605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.191 3.809 3 N -0.486 5.486 4 C 0.038 3.962 5 C -0.032 4.032 6 C 0.034 3.966 7 C -0.517 4.517 8 H 0.055 0.945 9 C 0.057 3.943 10 N -0.896 5.896 11 Si 0.891 3.109 12 H -0.277 1.277 13 H -0.288 1.288 14 H -0.277 1.277 15 C -0.037 4.037 16 N -0.459 5.459 17 C 0.112 3.888 18 C -0.104 4.104 19 H 0.079 0.921 20 C -0.144 4.144 21 C -0.118 4.118 22 C -0.042 4.042 23 H 0.075 0.925 24 H 0.086 0.914 25 H 0.065 0.935 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.017 0.983 29 H 0.013 0.987 30 H 0.259 0.741 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.057 0.943 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.650 -15.972 -8.465 20.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.070 4.070 3 N -0.206 5.206 4 C -0.090 4.090 5 C -0.071 4.071 6 C -0.004 4.004 7 C -0.556 4.556 8 H 0.073 0.927 9 C -0.144 4.144 10 N -0.536 5.536 11 Si 0.719 3.281 12 H -0.203 1.203 13 H -0.214 1.214 14 H -0.203 1.203 15 C -0.149 4.149 16 N -0.145 5.145 17 C -0.010 4.010 18 C -0.123 4.123 19 H 0.097 0.903 20 C -0.201 4.201 21 C -0.156 4.156 22 C -0.080 4.080 23 H 0.093 0.907 24 H 0.105 0.895 25 H 0.083 0.917 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.036 0.964 29 H 0.031 0.969 30 H 0.069 0.931 31 H 0.101 0.899 32 H 0.097 0.903 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -9.980 -15.282 -8.272 20.039 hybrid contribution 0.968 -0.214 0.212 1.014 sum -9.012 -15.496 -8.060 19.654 Atomic orbital electron populations 1.20060 0.85643 1.03183 1.02986 1.22983 0.95254 0.81497 1.07311 1.70376 1.02083 1.27727 1.20389 1.20785 0.93081 0.91252 1.03873 1.20104 0.89889 0.95604 1.01479 1.18994 0.95910 0.96312 0.89151 1.21251 1.13368 1.28742 0.92229 0.92673 1.25013 0.97246 0.96478 0.95673 1.69981 1.41120 1.45282 0.97194 0.86678 0.83194 0.81425 0.76805 1.20250 1.21409 1.20294 1.20737 0.84957 0.94985 1.14175 1.45062 1.06491 1.06363 1.56545 1.21897 0.98063 0.78707 1.02372 1.21442 0.94692 0.95024 1.01130 0.90258 1.21775 1.01900 0.94332 1.02140 1.21737 0.96885 0.97008 0.99949 1.20168 0.93562 0.91660 1.02654 0.90652 0.89513 0.91657 0.92317 0.92100 0.96416 0.96890 0.93116 0.89892 0.90348 0.92441 0.91795 0.92234 0.91439 0.90785 0.90657 0.88844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.71 10.24 36.01 0.37 -0.35 16 2 C 0.19 3.30 7.94 -155.75 -1.24 2.06 16 3 N -0.49 -10.53 11.27 -7.27 -0.08 -10.61 16 4 C 0.04 0.84 6.34 -82.99 -0.53 0.31 16 5 C -0.03 -0.76 5.54 -27.88 -0.15 -0.91 16 6 C 0.03 0.95 4.95 -27.89 -0.14 0.81 16 7 C -0.52 -15.29 9.11 -34.44 -0.31 -15.61 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 9 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 10 N -0.90 -28.02 13.29 55.43 0.74 -27.28 16 11 Si 0.89 22.29 29.54 -169.99 -5.02 17.27 16 12 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 13 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 14 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 15 C -0.04 -0.68 6.56 -81.73 -0.54 -1.22 16 16 N -0.46 -7.27 3.13 -109.43 -0.34 -7.61 16 17 C 0.11 1.22 5.97 -3.91 -0.02 1.19 16 18 C -0.10 -1.01 2.71 -90.41 -0.25 -1.25 16 19 H 0.08 0.80 8.11 -51.93 -0.42 0.38 16 20 C -0.14 -1.00 9.16 37.16 0.34 -0.66 16 21 C -0.12 -1.36 5.26 -26.38 -0.14 -1.50 16 22 C -0.04 -0.63 6.00 -27.60 -0.17 -0.80 16 23 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 24 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 25 H 0.06 0.58 7.59 -51.93 -0.39 0.19 16 26 H 0.06 1.27 8.01 -51.93 -0.42 0.86 16 27 H 0.06 1.45 8.14 -51.93 -0.42 1.03 16 28 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 31 H 0.08 0.71 7.72 -51.93 -0.40 0.31 16 32 H 0.08 0.79 8.13 -51.93 -0.42 0.36 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.07 0.83 8.12 -51.93 -0.42 0.41 16 37 H 0.07 0.71 8.11 -51.93 -0.42 0.29 16 38 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 LS Contribution 317.07 15.07 4.78 4.78 Total: -1.00 -34.84 317.07 -9.46 -44.31 By element: Atomic # 1 Polarization: 2.14 SS G_CDS: -6.67 Total: -4.53 kcal Atomic # 6 Polarization: -13.46 SS G_CDS: -2.87 Total: -16.33 kcal Atomic # 7 Polarization: -45.81 SS G_CDS: 0.31 Total: -45.50 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -34.84 -9.46 -44.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259963899.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.288 kcal (2) G-P(sol) polarization free energy of solvation -34.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds