Wall clock time and date at job start Mon Mar 30 2020 05:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30783 * 125.72268 * 2 1 4 4 C 1.34430 * 109.31981 * 179.78599 * 3 2 1 5 5 C 1.50700 * 126.10226 * 180.16896 * 4 3 2 6 6 C 1.52998 * 109.47300 * 270.30221 * 5 4 3 7 7 C 1.50692 * 109.47301 * 179.97438 * 6 5 4 8 8 H 1.07994 * 120.00056 * 0.02562 * 7 6 5 9 9 C 1.37883 * 119.99999 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99736 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 120.00010 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47055 * 60.00554 * 11 9 7 13 13 H 1.48497 * 109.46955 * 180.02562 * 11 9 7 14 14 H 1.48495 * 109.47328 * 300.00160 * 11 9 7 15 15 C 1.33858 * 107.79771 * 0.42022 * 4 3 2 16 16 N 1.34398 * 125.72401 * 180.31613 * 2 1 3 17 17 C 1.46475 * 128.44311 * 0.16365 * 16 2 1 18 18 H 1.08999 * 109.60521 * 282.42678 * 17 16 2 19 19 C 1.53005 * 109.59724 * 42.90965 * 17 16 2 20 20 C 1.53287 * 108.69121 * 162.66878 * 17 16 2 21 21 C 1.53114 * 109.70262 * 50.77513 * 20 17 16 22 22 C 1.50708 * 128.68157 * 179.87681 * 15 4 3 23 23 H 1.09006 * 109.46834 * 262.85250 * 1 2 3 24 24 H 1.09003 * 109.47324 * 22.85206 * 1 2 3 25 25 H 1.09002 * 109.47078 * 142.85264 * 1 2 3 26 26 H 1.09008 * 109.46891 * 30.29434 * 5 4 3 27 27 H 1.08991 * 109.47533 * 150.29802 * 5 4 3 28 28 H 1.09010 * 109.46866 * 300.00132 * 6 5 4 29 29 H 1.09004 * 109.47325 * 59.99051 * 6 5 4 30 30 H 0.97009 * 119.99581 * 179.97438 * 10 9 7 31 31 H 1.08997 * 109.47326 * 41.20196 * 19 17 16 32 32 H 1.09006 * 109.46811 * 161.20050 * 19 17 16 33 33 H 1.08999 * 109.47050 * 281.19235 * 19 17 16 34 34 H 1.09001 * 109.43565 * 170.84894 * 20 17 16 35 35 H 1.09009 * 109.43013 * 290.70851 * 20 17 16 36 36 H 1.09000 * 109.49568 * 50.03797 * 21 20 17 37 37 H 1.08996 * 109.50053 * 170.09702 * 21 20 17 38 38 H 1.08998 * 109.74212 * 44.59300 * 22 15 4 39 39 H 1.08994 * 109.78331 * 283.89700 * 22 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2707 1.0618 0.0000 4 6 3.5602 0.6822 0.0047 5 6 4.7559 1.5995 0.0100 6 6 5.1615 1.9169 -1.4307 7 6 6.3567 2.8346 -1.4255 8 1 6.7845 3.1588 -0.4884 9 6 6.9047 3.2597 -2.6172 10 7 6.3840 2.8646 -3.7584 11 14 8.3868 4.3968 -2.6107 12 1 9.5170 3.7329 -1.9128 13 1 8.7803 4.7050 -4.0091 14 1 8.0409 5.6569 -1.9053 15 6 3.5929 -0.6560 -0.0016 16 7 2.2918 -1.0911 -0.0060 17 6 1.8922 -2.5002 -0.0171 18 1 1.5775 -2.7990 0.9828 19 6 0.7387 -2.6988 -1.0026 20 6 3.0927 -3.3479 -0.4529 21 6 4.3186 -2.9765 0.3859 22 6 4.7919 -1.5690 -0.0024 23 1 -0.3633 -0.1279 1.0197 24 1 -0.3634 0.9470 -0.3991 25 1 -0.3633 -0.8192 -0.6206 26 1 4.5020 2.5243 0.5280 27 1 5.5855 1.1122 0.5220 28 1 5.4153 0.9920 -1.9489 29 1 4.3318 2.4042 -1.9429 30 1 6.7693 3.1640 -4.5968 31 1 0.9258 -2.1143 -1.9034 32 1 0.6617 -3.7543 -1.2638 33 1 -0.1929 -2.3695 -0.5426 34 1 2.8620 -4.4036 -0.3105 35 1 3.3042 -3.1625 -1.5061 36 1 4.0543 -2.9927 1.4433 37 1 5.1177 -3.6939 0.1997 38 1 5.5253 -1.2142 0.7217 39 1 5.2376 -1.5917 -0.9968 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259965899.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:49 Heat of formation + Delta-G solvation = 33.196419 kcal Electronic energy + Delta-G solvation = -18386.588704 eV Core-core repulsion = 15715.036862 eV Total energy + Delta-G solvation = -2671.551842 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.03348 -36.97291 -34.60854 -33.18887 -31.27586 -30.87622 -29.63576 -27.93461 -25.71101 -24.11884 -22.85108 -21.73954 -20.70207 -19.16814 -18.62496 -16.48217 -15.99796 -15.32103 -14.70666 -14.49244 -14.32368 -14.15662 -13.66215 -13.29183 -13.00009 -12.70769 -12.57904 -12.43166 -12.09496 -11.96152 -11.75371 -11.51795 -11.06129 -11.00543 -10.82325 -10.77791 -10.61020 -10.53837 -9.73607 -9.59282 -9.23178 -8.95987 -8.81234 -8.21793 -7.43726 -5.87530 -3.89538 2.48664 3.05962 3.41161 3.44827 3.47702 3.70705 4.35247 4.48874 4.56027 4.65995 4.80195 4.97512 4.99238 5.11824 5.21228 5.30485 5.46698 5.47808 5.57008 5.61287 5.67179 5.72728 5.82665 5.88006 5.90812 6.01810 6.12729 6.24425 6.29638 6.78805 6.89968 6.90400 7.15186 7.48560 7.71762 7.84331 8.02757 8.16331 8.55968 8.72560 9.17980 9.73242 11.23749 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.029739 B = 0.005413 C = 0.005015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.309876 B = 5171.646337 C = 5582.276660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.195 3.805 3 N -0.487 5.487 4 C 0.037 3.963 5 C -0.032 4.032 6 C 0.034 3.966 7 C -0.517 4.517 8 H 0.055 0.945 9 C 0.056 3.944 10 N -0.897 5.897 11 Si 0.891 3.109 12 H -0.277 1.277 13 H -0.288 1.288 14 H -0.277 1.277 15 C -0.037 4.037 16 N -0.454 5.454 17 C 0.135 3.865 18 H 0.084 0.916 19 C -0.170 4.170 20 C -0.128 4.128 21 C -0.123 4.123 22 C -0.041 4.041 23 H 0.070 0.930 24 H 0.086 0.914 25 H 0.078 0.922 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.013 0.987 29 H 0.017 0.983 30 H 0.259 0.741 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.063 0.937 37 H 0.073 0.927 38 H 0.085 0.915 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.449 -15.481 7.770 20.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.067 4.067 3 N -0.207 5.207 4 C -0.091 4.091 5 C -0.070 4.070 6 C -0.003 4.003 7 C -0.556 4.556 8 H 0.073 0.927 9 C -0.144 4.144 10 N -0.536 5.536 11 Si 0.719 3.281 12 H -0.203 1.203 13 H -0.214 1.214 14 H -0.203 1.203 15 C -0.149 4.149 16 N -0.141 5.141 17 C 0.031 3.969 18 H 0.102 0.898 19 C -0.227 4.227 20 C -0.166 4.166 21 C -0.160 4.160 22 C -0.079 4.079 23 H 0.089 0.911 24 H 0.105 0.895 25 H 0.097 0.903 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.031 0.969 29 H 0.036 0.964 30 H 0.069 0.931 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.103 0.897 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -10.773 -14.796 7.573 19.808 hybrid contribution 1.027 -0.193 -0.169 1.059 sum -9.746 -14.989 7.404 19.352 Atomic orbital electron populations 1.20414 0.85883 1.04337 1.02608 1.22909 0.95194 0.81463 1.07087 1.70383 1.02064 1.27786 1.20434 1.20772 0.93093 0.91226 1.03984 1.20098 0.89902 0.95582 1.01458 1.18990 0.95884 0.96278 0.89181 1.21253 1.13408 1.28674 0.92228 0.92684 1.25014 0.97252 0.96501 0.95665 1.69982 1.41156 1.45282 0.97189 0.86677 0.83197 0.81416 0.76806 1.20294 1.21410 1.20251 1.20730 0.84993 0.94968 1.14162 1.45208 1.06308 1.06142 1.56459 1.21431 0.95964 0.79315 1.00173 0.89830 1.22375 0.97631 1.03044 0.99678 1.21942 0.94095 0.99088 1.01497 1.21657 0.97385 0.97339 0.99646 1.20137 0.93244 0.91396 1.03146 0.91101 0.89523 0.90319 0.92154 0.92363 0.96893 0.96433 0.93121 0.91199 0.90701 0.90883 0.90131 0.90595 0.91842 0.90794 0.89689 0.89925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.89 9.90 36.01 0.36 -0.53 16 2 C 0.19 3.36 7.69 -155.76 -1.20 2.16 16 3 N -0.49 -10.57 11.27 -7.27 -0.08 -10.66 16 4 C 0.04 0.82 6.34 -82.99 -0.53 0.29 16 5 C -0.03 -0.75 5.54 -27.88 -0.15 -0.91 16 6 C 0.03 0.96 4.95 -27.89 -0.14 0.82 16 7 C -0.52 -15.34 9.11 -34.44 -0.31 -15.65 16 8 H 0.05 1.57 7.74 -52.49 -0.41 1.16 16 9 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 10 N -0.90 -28.10 13.29 55.43 0.74 -27.36 16 11 Si 0.89 22.34 29.54 -169.99 -5.02 17.32 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 14 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 15 C -0.04 -0.68 6.56 -81.73 -0.54 -1.22 16 16 N -0.45 -7.18 2.98 -102.40 -0.30 -7.48 16 17 C 0.13 1.47 3.56 -67.79 -0.24 1.23 16 18 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 19 C -0.17 -1.49 7.91 37.16 0.29 -1.19 16 20 C -0.13 -1.28 5.15 -26.52 -0.14 -1.42 16 21 C -0.12 -1.35 5.96 -26.42 -0.16 -1.50 16 22 C -0.04 -0.62 6.01 -27.62 -0.17 -0.78 16 23 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 25 H 0.08 0.75 4.59 -51.93 -0.24 0.51 16 26 H 0.06 1.44 8.14 -51.92 -0.42 1.02 16 27 H 0.06 1.27 7.79 -51.93 -0.40 0.86 16 28 H 0.01 0.37 8.14 -51.92 -0.42 -0.05 16 29 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 31 H 0.07 0.76 8.13 -51.93 -0.42 0.33 16 32 H 0.07 0.49 8.02 -51.93 -0.42 0.07 16 33 H 0.07 0.54 5.86 -51.93 -0.30 0.23 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.08 0.86 8.09 -51.92 -0.42 0.44 16 36 H 0.06 0.67 8.12 -51.93 -0.42 0.25 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.08 1.25 7.91 -51.93 -0.41 0.84 16 39 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 LS Contribution 310.38 15.07 4.68 4.68 Total: -1.00 -35.02 310.38 -9.39 -44.42 By element: Atomic # 1 Polarization: 2.59 SS G_CDS: -6.38 Total: -3.80 kcal Atomic # 6 Polarization: -14.10 SS G_CDS: -3.02 Total: -17.12 kcal Atomic # 7 Polarization: -45.85 SS G_CDS: 0.35 Total: -45.50 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -35.02 -9.39 -44.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259965899.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.614 kcal (2) G-P(sol) polarization free energy of solvation -35.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds