Wall clock time and date at job start Mon Mar 30 2020 05:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30783 * 125.72268 * 2 1 4 4 C 1.34430 * 109.31981 * 179.78599 * 3 2 1 5 5 C 1.50700 * 126.10226 * 180.16896 * 4 3 2 6 6 C 1.52998 * 109.47300 * 270.30221 * 5 4 3 7 7 C 1.50692 * 109.47301 * 179.97438 * 6 5 4 8 8 H 1.07994 * 120.00056 * 0.02562 * 7 6 5 9 9 C 1.37883 * 119.99999 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99736 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 120.00010 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47055 * 60.00554 * 11 9 7 13 13 H 1.48497 * 109.46955 * 180.02562 * 11 9 7 14 14 H 1.48495 * 109.47328 * 300.00160 * 11 9 7 15 15 C 1.33858 * 107.79771 * 0.42022 * 4 3 2 16 16 N 1.34398 * 125.72401 * 180.31613 * 2 1 3 17 17 C 1.46475 * 128.44311 * 0.16365 * 16 2 1 18 18 H 1.08999 * 109.60521 * 282.42678 * 17 16 2 19 19 C 1.53005 * 109.59724 * 42.90965 * 17 16 2 20 20 C 1.53287 * 108.69121 * 162.66878 * 17 16 2 21 21 C 1.53114 * 109.70262 * 50.77513 * 20 17 16 22 22 C 1.50708 * 128.68157 * 179.87681 * 15 4 3 23 23 H 1.09006 * 109.46834 * 262.85250 * 1 2 3 24 24 H 1.09003 * 109.47324 * 22.85206 * 1 2 3 25 25 H 1.09002 * 109.47078 * 142.85264 * 1 2 3 26 26 H 1.09008 * 109.46891 * 30.29434 * 5 4 3 27 27 H 1.08991 * 109.47533 * 150.29802 * 5 4 3 28 28 H 1.09010 * 109.46866 * 300.00132 * 6 5 4 29 29 H 1.09004 * 109.47325 * 59.99051 * 6 5 4 30 30 H 0.97009 * 119.99581 * 179.97438 * 10 9 7 31 31 H 1.08997 * 109.47326 * 41.20196 * 19 17 16 32 32 H 1.09006 * 109.46811 * 161.20050 * 19 17 16 33 33 H 1.08999 * 109.47050 * 281.19235 * 19 17 16 34 34 H 1.09001 * 109.43565 * 170.84894 * 20 17 16 35 35 H 1.09009 * 109.43013 * 290.70851 * 20 17 16 36 36 H 1.09000 * 109.49568 * 50.03797 * 21 20 17 37 37 H 1.08996 * 109.50053 * 170.09702 * 21 20 17 38 38 H 1.08998 * 109.74212 * 44.59300 * 22 15 4 39 39 H 1.08994 * 109.78331 * 283.89700 * 22 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2707 1.0618 0.0000 4 6 3.5602 0.6822 0.0047 5 6 4.7559 1.5995 0.0100 6 6 5.1615 1.9169 -1.4307 7 6 6.3567 2.8346 -1.4255 8 1 6.7845 3.1588 -0.4884 9 6 6.9047 3.2597 -2.6172 10 7 6.3840 2.8646 -3.7584 11 14 8.3868 4.3968 -2.6107 12 1 9.5170 3.7329 -1.9128 13 1 8.7803 4.7050 -4.0091 14 1 8.0409 5.6569 -1.9053 15 6 3.5929 -0.6560 -0.0016 16 7 2.2918 -1.0911 -0.0060 17 6 1.8922 -2.5002 -0.0171 18 1 1.5775 -2.7990 0.9828 19 6 0.7387 -2.6988 -1.0026 20 6 3.0927 -3.3479 -0.4529 21 6 4.3186 -2.9765 0.3859 22 6 4.7919 -1.5690 -0.0024 23 1 -0.3633 -0.1279 1.0197 24 1 -0.3634 0.9470 -0.3991 25 1 -0.3633 -0.8192 -0.6206 26 1 4.5020 2.5243 0.5280 27 1 5.5855 1.1122 0.5220 28 1 5.4153 0.9920 -1.9489 29 1 4.3318 2.4042 -1.9429 30 1 6.7693 3.1640 -4.5968 31 1 0.9258 -2.1143 -1.9034 32 1 0.6617 -3.7543 -1.2638 33 1 -0.1929 -2.3695 -0.5426 34 1 2.8620 -4.4036 -0.3105 35 1 3.3042 -3.1625 -1.5061 36 1 4.0543 -2.9927 1.4433 37 1 5.1177 -3.6939 0.1997 38 1 5.5253 -1.2142 0.7217 39 1 5.2376 -1.5917 -0.9968 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259965899.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:49 Heat of formation + Delta-G solvation = 11.848831 kcal Electronic energy + Delta-G solvation = -18387.514405 eV Core-core repulsion = 15715.036862 eV Total energy + Delta-G solvation = -2672.477543 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.35716 -38.02650 -36.24552 -34.96621 -33.06421 -32.06011 -30.94024 -29.18932 -27.39136 -25.59210 -23.84679 -23.48729 -22.11565 -20.61274 -19.83188 -18.52839 -17.44525 -16.63080 -16.36269 -15.71090 -15.57642 -15.25166 -14.88350 -14.64935 -14.26503 -14.10505 -13.99895 -13.87058 -13.55509 -13.30054 -12.90993 -12.78784 -12.61268 -12.56713 -12.37957 -12.00239 -11.87938 -11.80429 -11.60961 -11.44778 -11.27353 -10.72001 -10.54881 -10.24298 -8.92182 -8.18566 -6.31865 1.14116 1.39525 1.44763 1.52420 1.92242 2.17338 2.42861 3.13172 3.51712 3.57552 3.67870 3.72507 3.98646 4.11155 4.17483 4.31786 4.40459 4.51187 4.51459 4.66288 4.71962 4.74556 4.82815 4.89006 4.90053 4.97378 5.02469 5.03261 5.11764 5.19596 5.23734 5.30488 5.47129 5.53325 5.72064 5.82581 5.91067 6.23675 6.50851 6.84266 7.28722 7.37261 8.93373 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.029739 B = 0.005413 C = 0.005015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.309876 B = 5171.646337 C = 5582.276660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.197 3.803 3 N -0.543 5.543 4 C -0.017 4.017 5 C -0.015 4.015 6 C 0.050 3.950 7 C -0.544 4.544 8 H 0.064 0.936 9 C -0.002 4.002 10 N -0.937 5.937 11 Si 0.972 3.028 12 H -0.261 1.261 13 H -0.281 1.281 14 H -0.268 1.268 15 C -0.030 4.030 16 N -0.449 5.449 17 C 0.122 3.878 18 H 0.110 0.890 19 C -0.166 4.166 20 C -0.127 4.127 21 C -0.115 4.115 22 C -0.047 4.047 23 H 0.097 0.903 24 H 0.079 0.921 25 H 0.108 0.892 26 H 0.046 0.954 27 H 0.071 0.929 28 H -0.012 1.012 29 H -0.028 1.028 30 H 0.264 0.736 31 H 0.043 0.957 32 H 0.105 0.895 33 H 0.090 0.910 34 H 0.122 0.878 35 H 0.057 0.943 36 H 0.074 0.926 37 H 0.096 0.904 38 H 0.084 0.916 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.853 -17.716 8.881 22.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.066 4.066 3 N -0.265 5.265 4 C -0.144 4.144 5 C -0.054 4.054 6 C 0.012 3.988 7 C -0.582 4.582 8 H 0.082 0.918 9 C -0.199 4.199 10 N -0.577 5.577 11 Si 0.796 3.204 12 H -0.185 1.185 13 H -0.207 1.207 14 H -0.193 1.193 15 C -0.144 4.144 16 N -0.134 5.134 17 C 0.021 3.979 18 H 0.128 0.872 19 C -0.223 4.223 20 C -0.165 4.165 21 C -0.152 4.152 22 C -0.085 4.085 23 H 0.115 0.885 24 H 0.098 0.902 25 H 0.126 0.874 26 H 0.064 0.936 27 H 0.089 0.911 28 H 0.006 0.994 29 H -0.010 1.010 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.123 0.877 33 H 0.109 0.891 34 H 0.141 0.859 35 H 0.076 0.924 36 H 0.092 0.908 37 H 0.115 0.885 38 H 0.102 0.898 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.192 -17.066 8.699 22.185 hybrid contribution 1.066 0.443 -0.539 1.274 sum -10.126 -16.623 8.161 21.106 Atomic orbital electron populations 1.20644 0.82191 1.05256 1.04857 1.23791 0.97075 0.80996 1.04748 1.70249 1.02535 1.30719 1.22958 1.20589 0.92902 0.92677 1.08238 1.19737 0.91719 0.95835 0.98065 1.18748 0.94080 0.94429 0.91512 1.21661 1.14093 1.29398 0.93015 0.91793 1.26073 1.00794 0.98130 0.94934 1.70141 1.42954 1.46543 0.98056 0.85403 0.78813 0.78935 0.77292 1.18534 1.20662 1.19276 1.21047 0.87229 0.94293 1.11829 1.45536 1.04975 1.08103 1.54774 1.21991 0.97233 0.76282 1.02402 0.87187 1.22377 0.97302 1.04663 0.97972 1.22015 0.93148 1.01235 1.00064 1.21647 0.98653 0.94562 1.00353 1.20261 0.92111 0.93902 1.02234 0.88469 0.90165 0.87412 0.93572 0.91062 0.99357 1.01004 0.92772 0.93796 0.87665 0.89116 0.85949 0.92397 0.90761 0.88538 0.89801 0.91734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.59 9.90 71.24 0.71 -0.88 16 2 C 0.20 6.77 7.69 138.25 1.06 7.84 16 3 N -0.54 -24.79 11.27 -176.92 -1.99 -26.78 16 4 C -0.02 -0.78 6.34 41.16 0.26 -0.52 16 5 C -0.02 -0.76 5.54 29.85 0.17 -0.59 16 6 C 0.05 3.01 4.95 29.85 0.15 3.15 16 7 C -0.54 -33.52 9.11 25.60 0.23 -33.28 16 8 H 0.06 3.73 7.74 -2.91 -0.02 3.71 16 9 C 0.00 -0.12 5.46 84.66 0.46 0.34 16 10 N -0.94 -60.72 13.29 21.45 0.28 -60.43 16 11 Si 0.97 46.39 29.54 68.60 2.03 48.42 16 12 H -0.26 -11.71 7.11 99.48 0.71 -11.01 16 13 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 14 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 15 C -0.03 -1.13 6.56 40.73 0.27 -0.86 16 16 N -0.45 -13.79 2.98 -477.88 -1.42 -15.22 16 17 C 0.12 2.26 3.56 45.09 0.16 2.42 16 18 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 19 C -0.17 -2.31 7.91 71.98 0.57 -1.74 16 20 C -0.13 -2.12 5.15 30.73 0.16 -1.96 16 21 C -0.11 -2.23 5.96 30.80 0.18 -2.04 16 22 C -0.05 -1.42 6.01 30.02 0.18 -1.24 16 23 H 0.10 1.67 8.14 -2.38 -0.02 1.66 16 24 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 25 H 0.11 1.73 4.59 -2.39 -0.01 1.72 16 26 H 0.05 2.37 8.14 -2.38 -0.02 2.35 16 27 H 0.07 3.28 7.79 -2.39 -0.02 3.27 16 28 H -0.01 -0.76 8.14 -2.38 -0.02 -0.78 16 29 H -0.03 -1.94 8.14 -2.38 -0.02 -1.96 16 30 H 0.26 15.93 8.31 -92.70 -0.77 15.16 16 31 H 0.04 0.86 8.13 -2.39 -0.02 0.84 16 32 H 0.10 0.87 8.02 -2.38 -0.02 0.85 16 33 H 0.09 0.93 5.86 -2.39 -0.01 0.92 16 34 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.06 1.20 8.09 -2.38 -0.02 1.18 16 36 H 0.07 1.32 8.12 -2.39 -0.02 1.30 16 37 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.08 2.51 7.91 -2.39 -0.02 2.49 16 39 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -82.00 310.38 4.46 -77.53 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: 1.01 Total: 5.87 kcal Atomic # 6 Polarization: -33.94 SS G_CDS: 4.56 Total: -29.38 kcal Atomic # 7 Polarization: -99.30 SS G_CDS: -3.13 Total: -102.43 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.42 kcal Total: -82.00 4.46 -77.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259965899.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.383 kcal (2) G-P(sol) polarization free energy of solvation -81.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds