Wall clock time and date at job start Mon Mar 30 2020 05:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30782 * 125.72382 * 2 1 4 4 C 1.34420 * 109.32381 * 180.02562 * 3 2 1 5 5 C 1.50700 * 126.10559 * 180.02562 * 4 3 2 6 6 C 1.52995 * 109.47270 * 269.95869 * 5 4 3 7 7 C 1.50701 * 109.47315 * 179.97438 * 6 5 4 8 8 H 1.08000 * 119.99631 * 0.02562 * 7 6 5 9 9 C 1.37880 * 120.00221 * 179.97438 * 7 6 5 10 10 N 1.31512 * 119.99700 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 120.00090 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47432 * 89.99695 * 11 9 7 13 13 H 1.48504 * 109.47364 * 210.00232 * 11 9 7 14 14 H 1.48500 * 109.47038 * 329.99886 * 11 9 7 15 15 C 1.33864 * 107.79783 * 0.02562 * 4 3 2 16 16 N 1.34400 * 125.72421 * 180.02562 * 2 1 3 17 17 C 1.46478 * 128.44341 * 359.83524 * 16 2 1 18 18 H 1.09001 * 109.72682 * 77.50889 * 17 16 2 19 19 C 1.52997 * 109.60179 * 317.11269 * 17 16 2 20 20 C 1.53282 * 108.69056 * 197.34453 * 17 16 2 21 21 C 1.53113 * 109.70874 * 309.22540 * 20 17 16 22 22 C 1.50704 * 128.68386 * 179.91054 * 15 4 3 23 23 H 1.09001 * 109.47085 * 269.96819 * 1 2 3 24 24 H 1.08997 * 109.47361 * 29.97057 * 1 2 3 25 25 H 1.09004 * 109.47260 * 149.97187 * 1 2 3 26 26 H 1.08997 * 109.46916 * 29.95733 * 5 4 3 27 27 H 1.08997 * 109.47260 * 149.95845 * 5 4 3 28 28 H 1.09003 * 109.47330 * 300.00109 * 6 5 4 29 29 H 1.09007 * 109.47529 * 59.99905 * 6 5 4 30 30 H 0.97005 * 119.99997 * 179.97438 * 10 9 7 31 31 H 1.09002 * 109.47153 * 300.79411 * 19 17 16 32 32 H 1.09001 * 109.46832 * 180.79602 * 19 17 16 33 33 H 1.09004 * 109.47261 * 60.79583 * 19 17 16 34 34 H 1.09004 * 109.42726 * 69.29369 * 20 17 16 35 35 H 1.08996 * 109.43126 * 189.14838 * 20 17 16 36 36 H 1.09001 * 109.49625 * 189.85232 * 21 20 17 37 37 H 1.08997 * 109.49240 * 309.91133 * 21 20 17 38 38 H 1.09002 * 109.74972 * 76.11286 * 22 15 4 39 39 H 1.09006 * 109.74535 * 315.39549 * 22 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2706 1.0617 0.0000 4 6 3.5601 0.6822 -0.0006 5 6 4.7558 1.5995 -0.0002 6 6 5.1608 1.9101 -1.4425 7 6 6.3561 2.8279 -1.4422 8 1 6.7843 3.1564 -0.5067 9 6 6.9036 3.2474 -2.6361 10 7 6.3823 2.8469 -3.7752 11 14 8.3856 4.3844 -2.6356 12 1 9.6306 3.5750 -2.6349 13 1 8.3527 5.2410 -3.8483 14 1 8.3516 5.2413 -1.4233 15 6 3.5928 -0.6560 -0.0015 16 7 2.2918 -1.0911 -0.0005 17 6 1.8921 -2.5003 0.0022 18 1 1.5759 -2.7950 -0.9985 19 6 0.7384 -2.7048 0.9860 20 6 3.0925 -3.3505 0.4333 21 6 4.3187 -2.9743 -0.4030 22 6 4.7918 -1.5690 -0.0042 23 1 -0.3633 -0.0006 1.0277 24 1 -0.3634 0.8902 -0.5134 25 1 -0.3634 -0.8898 -0.5143 26 1 4.5022 2.5267 0.5136 27 1 5.5857 1.1145 0.5137 28 1 5.4143 0.9829 -1.9565 29 1 4.3309 2.3952 -1.9566 30 1 6.7673 3.1423 -4.6151 31 1 1.0550 -2.4042 1.9848 32 1 0.4522 -3.7565 0.9967 33 1 -0.1139 -2.0994 0.6774 34 1 3.3038 -3.1713 1.4875 35 1 2.8619 -4.4053 0.2846 36 1 5.1180 -3.6924 -0.2201 37 1 4.0549 -2.9851 -1.4605 38 1 5.2358 -1.5969 0.9909 39 1 5.5260 -1.2104 -0.7258 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259965902.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:52 Heat of formation + Delta-G solvation = 30.755677 kcal Electronic energy + Delta-G solvation = -18369.574739 eV Core-core repulsion = 15697.917058 eV Total energy + Delta-G solvation = -2671.657681 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.03714 -36.97010 -34.61293 -33.17788 -31.26926 -30.88672 -29.67696 -27.90637 -25.72907 -24.11986 -22.82795 -21.70952 -20.73499 -19.22900 -18.57715 -16.37175 -16.12820 -15.34946 -14.64301 -14.48001 -14.33898 -14.11901 -13.62899 -13.30082 -12.95659 -12.72225 -12.60926 -12.46832 -12.20536 -11.92321 -11.80546 -11.53216 -11.05737 -10.99004 -10.85038 -10.78340 -10.62874 -10.51589 -9.75557 -9.59622 -9.22914 -8.95069 -8.81744 -8.22299 -7.43971 -5.87796 -3.89775 2.48485 3.05029 3.39310 3.45161 3.49363 3.69998 4.35329 4.48470 4.55916 4.65409 4.78376 4.98097 5.04044 5.11824 5.23237 5.30426 5.42311 5.47577 5.56546 5.59559 5.63447 5.69521 5.79353 5.86038 5.89834 6.01272 6.19847 6.24152 6.27951 6.77336 6.89499 6.91321 7.15120 7.48019 7.70914 7.84416 8.02363 8.16044 8.55714 8.71772 9.17940 9.73132 11.23498 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.032555 B = 0.005324 C = 0.004868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.865635 B = 5257.592565 C = 5750.528801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.193 3.807 3 N -0.486 5.486 4 C 0.038 3.962 5 C -0.032 4.032 6 C 0.034 3.966 7 C -0.516 4.516 8 H 0.055 0.945 9 C 0.056 3.944 10 N -0.896 5.896 11 Si 0.891 3.109 12 H -0.281 1.281 13 H -0.287 1.287 14 H -0.274 1.274 15 C -0.037 4.037 16 N -0.453 5.453 17 C 0.132 3.868 18 H 0.085 0.915 19 C -0.172 4.172 20 C -0.126 4.126 21 C -0.124 4.124 22 C -0.042 4.042 23 H 0.074 0.926 24 H 0.085 0.915 25 H 0.069 0.931 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.013 0.987 29 H 0.017 0.983 30 H 0.259 0.741 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.459 -15.318 8.805 20.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.068 4.068 3 N -0.206 5.206 4 C -0.090 4.090 5 C -0.071 4.071 6 C -0.004 4.004 7 C -0.555 4.555 8 H 0.074 0.926 9 C -0.144 4.144 10 N -0.536 5.536 11 Si 0.719 3.281 12 H -0.208 1.208 13 H -0.213 1.213 14 H -0.199 1.199 15 C -0.148 4.148 16 N -0.140 5.140 17 C 0.029 3.971 18 H 0.103 0.897 19 C -0.229 4.229 20 C -0.164 4.164 21 C -0.162 4.162 22 C -0.080 4.080 23 H 0.092 0.908 24 H 0.104 0.896 25 H 0.088 0.912 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.031 0.969 29 H 0.036 0.964 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.093 0.907 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -10.788 -14.633 8.620 20.120 hybrid contribution 1.027 -0.239 -0.228 1.078 sum -9.761 -14.872 8.392 19.670 Atomic orbital electron populations 1.20225 0.85889 1.03319 1.02656 1.22893 0.95172 0.81508 1.07230 1.70367 1.02076 1.27772 1.20430 1.20772 0.93078 0.91228 1.03952 1.20096 0.89903 0.95600 1.01453 1.19000 0.95923 0.96305 0.89170 1.21290 1.13335 1.28620 0.92248 0.92629 1.25013 0.97250 0.96504 0.95681 1.69989 1.41049 1.45359 0.97182 0.86619 0.83148 0.80906 0.77467 1.20770 1.21335 1.19851 1.20742 0.84988 0.94968 1.14144 1.45191 1.06332 1.06135 1.56342 1.21437 0.95965 0.79302 1.00382 0.89743 1.22380 0.98028 1.02978 0.99533 1.21915 0.94195 0.99168 1.01098 1.21667 0.97224 0.97179 1.00088 1.20165 0.93590 0.91673 1.02601 0.90775 0.89588 0.91193 0.92120 0.92353 0.96890 0.96413 0.93177 0.91722 0.90779 0.90616 0.90929 0.90160 0.90812 0.91468 0.90682 0.88907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.74 8.61 36.01 0.31 -0.43 16 2 C 0.19 3.32 7.69 -155.76 -1.20 2.12 16 3 N -0.49 -10.53 11.27 -7.27 -0.08 -10.61 16 4 C 0.04 0.83 6.34 -82.99 -0.53 0.30 16 5 C -0.03 -0.75 5.54 -27.89 -0.15 -0.91 16 6 C 0.03 0.94 4.95 -27.88 -0.14 0.80 16 7 C -0.52 -15.28 9.11 -34.44 -0.31 -15.60 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 9 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 10 N -0.90 -28.05 13.29 55.43 0.74 -27.31 16 11 Si 0.89 22.31 29.54 -169.99 -5.02 17.29 16 12 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 13 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 14 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 15 C -0.04 -0.68 6.56 -81.73 -0.54 -1.21 16 16 N -0.45 -7.17 2.98 -102.40 -0.31 -7.47 16 17 C 0.13 1.45 3.47 -67.80 -0.24 1.22 16 18 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 19 C -0.17 -1.42 8.87 37.16 0.33 -1.09 16 20 C -0.13 -1.22 5.22 -26.53 -0.14 -1.36 16 21 C -0.12 -1.43 5.96 -26.39 -0.16 -1.59 16 22 C -0.04 -0.64 6.00 -27.60 -0.17 -0.80 16 23 H 0.07 0.74 8.02 -51.93 -0.42 0.32 16 24 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 25 H 0.07 0.65 6.54 -51.93 -0.34 0.31 16 26 H 0.06 1.45 8.14 -51.93 -0.42 1.03 16 27 H 0.06 1.27 8.01 -51.93 -0.42 0.85 16 28 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.02 0.54 8.14 -51.92 -0.42 0.12 16 30 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.08 0.59 4.67 -51.93 -0.24 0.35 16 34 H 0.07 0.73 8.09 -51.93 -0.42 0.31 16 35 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.83 8.12 -51.93 -0.42 0.41 16 38 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 LS Contribution 311.25 15.07 4.69 4.69 Total: -1.00 -34.94 311.25 -9.45 -44.39 By element: Atomic # 1 Polarization: 2.42 SS G_CDS: -6.45 Total: -4.02 kcal Atomic # 6 Polarization: -13.94 SS G_CDS: -3.02 Total: -16.96 kcal Atomic # 7 Polarization: -45.74 SS G_CDS: 0.35 Total: -45.39 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -34.94 -9.45 -44.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259965902.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.150 kcal (2) G-P(sol) polarization free energy of solvation -34.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds