Wall clock time and date at job start Mon Mar 30 2020 05:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30782 * 125.72382 * 2 1 4 4 C 1.34420 * 109.32381 * 180.02562 * 3 2 1 5 5 C 1.50700 * 126.10559 * 180.02562 * 4 3 2 6 6 C 1.52995 * 109.47270 * 269.95869 * 5 4 3 7 7 C 1.50701 * 109.47315 * 179.97438 * 6 5 4 8 8 H 1.08000 * 119.99631 * 0.02562 * 7 6 5 9 9 C 1.37880 * 120.00221 * 179.97438 * 7 6 5 10 10 N 1.31512 * 119.99700 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 120.00090 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47432 * 89.99695 * 11 9 7 13 13 H 1.48504 * 109.47364 * 210.00232 * 11 9 7 14 14 H 1.48500 * 109.47038 * 329.99886 * 11 9 7 15 15 C 1.33864 * 107.79783 * 0.02562 * 4 3 2 16 16 N 1.34400 * 125.72421 * 180.02562 * 2 1 3 17 17 C 1.46478 * 128.44341 * 359.83524 * 16 2 1 18 18 H 1.09001 * 109.72682 * 77.50889 * 17 16 2 19 19 C 1.52997 * 109.60179 * 317.11269 * 17 16 2 20 20 C 1.53282 * 108.69056 * 197.34453 * 17 16 2 21 21 C 1.53113 * 109.70874 * 309.22540 * 20 17 16 22 22 C 1.50704 * 128.68386 * 179.91054 * 15 4 3 23 23 H 1.09001 * 109.47085 * 269.96819 * 1 2 3 24 24 H 1.08997 * 109.47361 * 29.97057 * 1 2 3 25 25 H 1.09004 * 109.47260 * 149.97187 * 1 2 3 26 26 H 1.08997 * 109.46916 * 29.95733 * 5 4 3 27 27 H 1.08997 * 109.47260 * 149.95845 * 5 4 3 28 28 H 1.09003 * 109.47330 * 300.00109 * 6 5 4 29 29 H 1.09007 * 109.47529 * 59.99905 * 6 5 4 30 30 H 0.97005 * 119.99997 * 179.97438 * 10 9 7 31 31 H 1.09002 * 109.47153 * 300.79411 * 19 17 16 32 32 H 1.09001 * 109.46832 * 180.79602 * 19 17 16 33 33 H 1.09004 * 109.47261 * 60.79583 * 19 17 16 34 34 H 1.09004 * 109.42726 * 69.29369 * 20 17 16 35 35 H 1.08996 * 109.43126 * 189.14838 * 20 17 16 36 36 H 1.09001 * 109.49625 * 189.85232 * 21 20 17 37 37 H 1.08997 * 109.49240 * 309.91133 * 21 20 17 38 38 H 1.09002 * 109.74972 * 76.11286 * 22 15 4 39 39 H 1.09006 * 109.74535 * 315.39549 * 22 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2706 1.0617 0.0000 4 6 3.5601 0.6822 -0.0006 5 6 4.7558 1.5995 -0.0002 6 6 5.1608 1.9101 -1.4425 7 6 6.3561 2.8279 -1.4422 8 1 6.7843 3.1564 -0.5067 9 6 6.9036 3.2474 -2.6361 10 7 6.3823 2.8469 -3.7752 11 14 8.3856 4.3844 -2.6356 12 1 9.6306 3.5750 -2.6349 13 1 8.3527 5.2410 -3.8483 14 1 8.3516 5.2413 -1.4233 15 6 3.5928 -0.6560 -0.0015 16 7 2.2918 -1.0911 -0.0005 17 6 1.8921 -2.5003 0.0022 18 1 1.5759 -2.7950 -0.9985 19 6 0.7384 -2.7048 0.9860 20 6 3.0925 -3.3505 0.4333 21 6 4.3187 -2.9743 -0.4030 22 6 4.7918 -1.5690 -0.0042 23 1 -0.3633 -0.0006 1.0277 24 1 -0.3634 0.8902 -0.5134 25 1 -0.3634 -0.8898 -0.5143 26 1 4.5022 2.5267 0.5136 27 1 5.5857 1.1145 0.5137 28 1 5.4143 0.9829 -1.9565 29 1 4.3309 2.3952 -1.9566 30 1 6.7673 3.1423 -4.6151 31 1 1.0550 -2.4042 1.9848 32 1 0.4522 -3.7565 0.9967 33 1 -0.1139 -2.0994 0.6774 34 1 3.3038 -3.1713 1.4875 35 1 2.8619 -4.4053 0.2846 36 1 5.1180 -3.6924 -0.2201 37 1 4.0549 -2.9851 -1.4605 38 1 5.2358 -1.5969 0.9909 39 1 5.5260 -1.2104 -0.7258 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259965902.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:51 Heat of formation + Delta-G solvation = 9.553142 kcal Electronic energy + Delta-G solvation = -18370.494150 eV Core-core repulsion = 15697.917058 eV Total energy + Delta-G solvation = -2672.577092 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.35760 -38.02012 -36.25285 -34.95412 -33.04583 -32.06357 -30.97111 -29.14950 -27.38298 -25.59832 -23.82000 -23.44973 -22.15278 -20.64528 -19.79264 -18.52016 -17.43440 -16.61139 -16.43532 -15.70779 -15.58733 -15.24997 -14.76805 -14.58749 -14.39312 -14.05638 -13.91588 -13.84614 -13.60146 -13.14039 -13.06158 -12.83276 -12.68797 -12.50029 -12.35086 -11.99402 -11.90801 -11.79996 -11.61567 -11.48927 -11.25932 -10.72095 -10.54911 -10.24644 -8.91964 -8.18536 -6.31699 1.14344 1.39656 1.42901 1.54274 1.91738 2.17231 2.42894 3.13312 3.52061 3.57341 3.68244 3.72461 4.00040 4.11136 4.19259 4.31468 4.44262 4.48957 4.52715 4.67915 4.71780 4.75563 4.84436 4.87244 4.90940 4.99215 4.99741 5.01214 5.11972 5.19680 5.25274 5.30993 5.47932 5.53486 5.72211 5.82748 5.91027 6.23854 6.50330 6.84555 7.28344 7.37487 8.93574 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.032555 B = 0.005324 C = 0.004868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.865635 B = 5257.592565 C = 5750.528801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.195 3.805 3 N -0.543 5.543 4 C -0.016 4.016 5 C -0.015 4.015 6 C 0.049 3.951 7 C -0.543 4.543 8 H 0.063 0.937 9 C -0.002 4.002 10 N -0.936 5.936 11 Si 0.972 3.028 12 H -0.267 1.267 13 H -0.282 1.282 14 H -0.263 1.263 15 C -0.030 4.030 16 N -0.448 5.448 17 C 0.118 3.882 18 H 0.096 0.904 19 C -0.165 4.165 20 C -0.120 4.120 21 C -0.119 4.119 22 C -0.046 4.046 23 H 0.098 0.902 24 H 0.080 0.920 25 H 0.102 0.898 26 H 0.046 0.954 27 H 0.070 0.930 28 H -0.012 1.012 29 H -0.028 1.028 30 H 0.264 0.736 31 H 0.055 0.945 32 H 0.106 0.894 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.119 0.881 36 H 0.099 0.901 37 H 0.056 0.944 38 H 0.089 0.911 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.887 -17.516 9.857 22.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.067 4.067 3 N -0.264 5.264 4 C -0.144 4.144 5 C -0.053 4.053 6 C 0.012 3.988 7 C -0.581 4.581 8 H 0.082 0.918 9 C -0.199 4.199 10 N -0.577 5.577 11 Si 0.795 3.205 12 H -0.192 1.192 13 H -0.207 1.207 14 H -0.187 1.187 15 C -0.144 4.144 16 N -0.133 5.133 17 C 0.017 3.983 18 H 0.114 0.886 19 C -0.222 4.222 20 C -0.158 4.158 21 C -0.157 4.157 22 C -0.085 4.085 23 H 0.116 0.884 24 H 0.099 0.901 25 H 0.120 0.880 26 H 0.065 0.935 27 H 0.089 0.911 28 H 0.007 0.993 29 H -0.010 1.010 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.125 0.875 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.137 0.863 36 H 0.118 0.882 37 H 0.075 0.925 38 H 0.108 0.892 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.230 -16.865 9.687 22.458 hybrid contribution 1.079 0.387 -0.584 1.286 sum -10.151 -16.478 9.104 21.388 Atomic orbital electron populations 1.20460 0.82121 1.04634 1.04609 1.23796 0.97098 0.81007 1.04843 1.70234 1.02521 1.30690 1.22928 1.20582 0.92899 0.92656 1.08224 1.19732 0.91706 0.95840 0.98066 1.18755 0.94103 0.94458 0.91498 1.21686 1.14028 1.29348 0.92995 0.91831 1.26062 1.00765 0.98125 0.94954 1.70144 1.42857 1.46611 0.98054 0.85351 0.78732 0.78482 0.77885 1.19166 1.20721 1.18694 1.21059 0.87232 0.94307 1.11833 1.45526 1.04997 1.08084 1.54705 1.21988 0.97788 0.76387 1.02142 0.88614 1.22372 0.96735 1.05211 0.97919 1.21955 0.92408 1.00952 1.00460 1.21668 0.99169 0.95052 0.99802 1.20276 0.91955 0.93494 1.02739 0.88358 0.90145 0.87997 0.93549 0.91115 0.99315 1.00971 0.92782 0.92629 0.87531 0.90013 0.90888 0.86304 0.88219 0.92528 0.89225 0.91651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.31 8.61 71.24 0.61 -0.70 16 2 C 0.20 6.69 7.69 138.25 1.06 7.75 16 3 N -0.54 -24.63 11.27 -176.92 -1.99 -26.62 16 4 C -0.02 -0.76 6.34 41.17 0.26 -0.50 16 5 C -0.01 -0.75 5.54 29.85 0.17 -0.59 16 6 C 0.05 2.97 4.95 29.85 0.15 3.12 16 7 C -0.54 -33.40 9.11 25.60 0.23 -33.17 16 8 H 0.06 3.71 7.74 -2.91 -0.02 3.69 16 9 C 0.00 -0.11 5.46 84.66 0.46 0.35 16 10 N -0.94 -60.57 13.29 21.45 0.28 -60.29 16 11 Si 0.97 46.38 29.54 68.60 2.03 48.40 16 12 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 13 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 14 H -0.26 -12.00 7.11 99.48 0.71 -11.29 16 15 C -0.03 -1.14 6.56 40.73 0.27 -0.87 16 16 N -0.45 -13.78 2.98 -477.90 -1.43 -15.21 16 17 C 0.12 2.22 3.47 45.09 0.16 2.38 16 18 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 19 C -0.17 -2.03 8.87 71.98 0.64 -1.40 16 20 C -0.12 -1.89 5.22 30.73 0.16 -1.73 16 21 C -0.12 -2.51 5.96 30.82 0.18 -2.33 16 22 C -0.05 -1.41 6.00 30.03 0.18 -1.23 16 23 H 0.10 1.69 8.02 -2.39 -0.02 1.67 16 24 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 25 H 0.10 1.55 6.54 -2.38 -0.02 1.53 16 26 H 0.05 2.38 8.14 -2.39 -0.02 2.36 16 27 H 0.07 3.26 8.01 -2.39 -0.02 3.24 16 28 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 29 H -0.03 -1.92 8.14 -2.38 -0.02 -1.94 16 30 H 0.26 15.86 8.31 -92.70 -0.77 15.09 16 31 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.08 0.91 4.67 -2.38 -0.01 0.90 16 34 H 0.07 1.19 8.09 -2.38 -0.02 1.17 16 35 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.06 1.31 8.12 -2.39 -0.02 1.29 16 38 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 39 H 0.06 2.33 8.14 -2.38 -0.02 2.31 16 Total: -1.00 -81.57 311.25 4.44 -77.14 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: 1.01 Total: 5.48 kcal Atomic # 6 Polarization: -33.44 SS G_CDS: 4.53 Total: -28.90 kcal Atomic # 7 Polarization: -98.98 SS G_CDS: -3.13 Total: -102.12 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.40 kcal Total: -81.57 4.44 -77.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259965902.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.691 kcal (2) G-P(sol) polarization free energy of solvation -81.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds