Wall clock time and date at job start Mon Mar 30 2020 05:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.36339 * 125.89234 * 2 1 4 4 H 0.97007 * 125.63340 * 359.97438 * 3 2 1 5 5 C 1.36339 * 108.73189 * 179.74914 * 3 2 1 6 6 C 1.50699 * 125.89418 * 180.25711 * 5 3 2 7 7 H 1.09004 * 109.90933 * 144.02800 * 6 5 3 8 8 C 1.53994 * 109.91820 * 265.13265 * 6 5 3 9 9 C 1.54596 * 105.13813 * 120.57541 * 8 6 5 10 10 C 1.54936 * 102.92226 * 21.96030 * 9 8 6 11 11 N 1.47904 * 109.91576 * 22.72024 * 6 5 3 12 12 C 1.34847 * 108.21638 * 0.36842 * 5 3 2 13 13 C 1.50706 * 126.29390 * 179.89929 * 12 5 3 14 14 C 1.34849 * 125.88984 * 179.97438 * 2 1 3 15 15 C 1.50698 * 126.29409 * 0.02562 * 14 2 1 16 16 C 1.50700 * 109.46683 * 270.01911 * 15 14 2 17 17 H 1.08001 * 120.00144 * 0.02562 * 16 15 14 18 18 C 1.37879 * 119.99753 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00259 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00071 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47383 * 89.99895 * 20 18 16 22 22 H 1.48499 * 109.47214 * 210.00516 * 20 18 16 23 23 H 1.48506 * 109.47074 * 330.00045 * 20 18 16 24 24 H 1.08998 * 109.47683 * 270.02889 * 1 2 3 25 25 H 1.09004 * 109.47226 * 30.03291 * 1 2 3 26 26 H 1.09005 * 109.46809 * 150.02924 * 1 2 3 27 27 H 1.09004 * 110.30741 * 239.49201 * 8 6 5 28 28 H 1.09002 * 110.30778 * 1.56420 * 8 6 5 29 29 H 1.09003 * 110.71772 * 140.32010 * 9 8 6 30 30 H 1.08993 * 110.72205 * 263.41948 * 9 8 6 31 31 H 1.09000 * 110.66529 * 81.02216 * 10 9 8 32 32 H 1.09003 * 110.66153 * 203.98039 * 10 9 8 33 33 H 1.00892 * 110.99963 * 335.83164 * 11 6 5 34 34 H 1.08999 * 109.46995 * 269.71466 * 13 12 5 35 35 H 1.08994 * 109.46790 * 29.71153 * 13 12 5 36 36 H 1.08997 * 109.47305 * 149.71594 * 13 12 5 37 37 H 1.08999 * 109.47387 * 30.01867 * 15 14 2 38 38 H 1.09002 * 109.47481 * 150.01967 * 15 14 2 39 39 H 0.96998 * 119.99663 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3063 1.1045 0.0000 4 1 1.9989 2.0246 -0.0004 5 6 3.6090 0.7022 0.0057 6 6 4.8133 1.6080 0.0131 7 1 5.6056 1.1672 0.6182 8 6 5.3135 1.8277 -1.4267 9 6 5.2316 3.3546 -1.6540 10 6 5.2500 3.9211 -0.2121 11 7 4.4424 2.9351 0.5507 12 6 3.6338 -0.6460 0.0010 13 6 4.8648 -1.5155 0.0024 14 6 2.2975 -1.0925 0.0005 15 6 1.8364 -2.5272 0.0006 16 6 1.6818 -3.0049 1.4215 17 1 1.8956 -2.3363 2.2423 18 6 1.2664 -4.2952 1.6735 19 7 1.0055 -5.1093 0.6740 20 14 1.0740 -4.8873 3.4348 21 1 -0.3098 -4.6154 3.9001 22 1 1.3397 -6.3469 3.4982 23 1 2.0392 -4.1702 4.3063 24 1 -0.3634 0.0005 1.0276 25 1 -0.3634 0.8897 -0.5144 26 1 -0.3633 -0.8903 -0.5134 27 1 6.3435 1.4851 -1.5258 28 1 4.6713 1.3034 -2.1344 29 1 6.0951 3.7074 -2.2181 30 1 4.3053 3.6195 -2.1637 31 1 6.2693 3.9629 0.1718 32 1 4.7875 4.9076 -0.1805 33 1 3.4554 3.1091 0.4348 34 1 5.1623 -1.7257 -1.0249 35 1 5.6745 -0.9979 0.5166 36 1 4.6477 -2.4518 0.5165 37 1 0.8783 -2.6010 -0.5139 38 1 2.5729 -3.1456 -0.5126 39 1 0.7129 -6.0169 0.8515 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259993129.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:32 Heat of formation + Delta-G solvation = 26.957596 kcal Electronic energy + Delta-G solvation = -18317.271844 eV Core-core repulsion = 15645.449466 eV Total energy + Delta-G solvation = -2671.822378 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.87489 -38.23164 -33.38946 -32.33862 -31.41377 -30.01992 -28.89423 -28.08789 -26.23250 -24.24044 -22.61970 -21.76098 -20.58979 -18.42685 -17.85088 -17.22432 -16.09955 -15.60424 -14.88088 -14.37294 -14.15110 -13.91229 -13.84857 -12.73510 -12.56247 -12.46067 -12.20014 -12.03288 -11.82408 -11.68367 -11.65367 -11.31000 -11.24981 -11.14167 -11.05910 -10.78963 -10.65404 -10.49286 -10.02577 -9.49132 -9.24897 -8.80594 -8.25751 -7.49445 -6.92768 -5.87227 -3.88958 2.84991 3.38700 3.44736 3.49374 3.69826 3.85920 4.24127 4.58490 4.63346 4.73067 4.89971 5.17245 5.34562 5.40184 5.46093 5.66020 5.69545 5.75259 5.79359 5.91567 5.95048 6.06596 6.15219 6.22633 6.25716 6.44363 6.54414 6.59805 6.69414 6.92275 7.04617 7.12712 7.33795 7.70323 7.72116 7.99906 8.10610 8.18132 8.33709 8.59038 9.17162 9.73619 11.21915 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.033520 B = 0.005462 C = 0.005255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.113304 B = 5124.724846 C = 5327.126747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.007 4.007 3 N -0.563 5.563 4 H 0.396 0.604 5 C -0.013 4.013 6 C 0.153 3.847 7 H 0.099 0.901 8 C -0.144 4.144 9 C -0.158 4.158 10 C 0.040 3.960 11 N -0.669 5.669 12 C -0.145 4.145 13 C -0.075 4.075 14 C -0.104 4.104 15 C 0.082 3.918 16 C -0.497 4.497 17 H 0.053 0.947 18 C 0.055 3.945 19 N -0.899 5.899 20 Si 0.888 3.112 21 H -0.282 1.282 22 H -0.288 1.288 23 H -0.275 1.275 24 H 0.064 0.936 25 H 0.044 0.956 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.328 0.672 34 H 0.050 0.950 35 H 0.045 0.955 36 H 0.072 0.928 37 H 0.020 0.980 38 H 0.023 0.977 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.224 16.091 -4.421 17.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.116 4.116 3 N -0.161 5.161 4 H 0.231 0.769 5 C -0.125 4.125 6 C 0.042 3.958 7 H 0.117 0.883 8 C -0.183 4.183 9 C -0.198 4.198 10 C -0.089 4.089 11 N -0.297 5.297 12 C -0.153 4.153 13 C -0.133 4.133 14 C -0.110 4.110 15 C 0.044 3.956 16 C -0.535 4.535 17 H 0.072 0.928 18 C -0.145 4.145 19 N -0.539 5.539 20 Si 0.716 3.284 21 H -0.209 1.209 22 H -0.214 1.214 23 H -0.199 1.199 24 H 0.083 0.917 25 H 0.063 0.937 26 H 0.100 0.900 27 H 0.091 0.909 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.101 0.899 32 H 0.091 0.909 33 H 0.145 0.855 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.091 0.909 37 H 0.039 0.961 38 H 0.041 0.959 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 6.522 16.025 -3.823 17.719 hybrid contribution -0.758 0.040 0.101 0.765 sum 5.765 16.066 -3.722 17.470 Atomic orbital electron populations 1.20136 0.88804 1.01762 1.02043 1.20027 0.92858 0.85579 1.13135 1.41464 1.05306 1.07211 1.62078 0.76869 1.19729 0.84014 0.93935 1.14789 1.20797 0.93819 0.87440 0.93714 0.88283 1.22905 1.02179 0.95550 0.97690 1.23129 1.02107 0.96089 0.98440 1.23147 0.99544 0.95437 0.90817 1.62902 1.09495 1.02057 1.55247 1.19164 0.95436 0.91227 1.09516 1.20080 0.93486 0.99299 1.00412 1.19995 0.91082 0.96602 1.03329 1.17675 0.95904 0.85207 0.96780 1.21140 1.43727 0.96497 0.92151 0.92839 1.24991 0.95921 0.96887 0.96678 1.69963 1.46988 1.06562 1.30394 0.86649 0.78342 0.77777 0.85586 1.20851 1.21360 1.19948 0.91717 0.93706 0.90019 0.90940 0.90710 0.90898 0.91823 0.89948 0.90922 0.85532 0.93154 0.93567 0.90857 0.96149 0.95908 0.93176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.20 10.21 36.00 0.37 -0.83 16 2 C -0.01 -0.13 7.16 -81.79 -0.59 -0.72 16 3 N -0.56 -9.26 5.79 -5.44 -0.03 -9.29 16 4 H 0.40 5.16 7.43 -40.82 -0.30 4.86 16 5 C -0.01 -0.23 5.88 -81.79 -0.48 -0.71 16 6 C 0.15 2.10 3.58 -67.79 -0.24 1.86 16 7 H 0.10 1.43 7.35 -51.93 -0.38 1.05 16 8 C -0.14 -1.68 6.56 -25.37 -0.17 -1.85 16 9 C -0.16 -1.49 7.06 -24.87 -0.18 -1.66 16 10 C 0.04 0.38 7.55 -1.90 -0.01 0.37 16 11 N -0.67 -8.20 7.39 -104.34 -0.77 -8.97 16 12 C -0.15 -2.96 6.14 -104.82 -0.64 -3.60 16 13 C -0.08 -1.40 9.91 36.01 0.36 -1.04 16 14 C -0.10 -2.38 5.33 -104.82 -0.56 -2.94 16 15 C 0.08 2.18 5.00 -29.04 -0.15 2.04 16 16 C -0.50 -14.30 9.09 -34.44 -0.31 -14.61 16 17 H 0.05 1.56 7.74 -52.49 -0.41 1.16 16 18 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 19 N -0.90 -27.09 13.29 55.43 0.74 -26.35 16 20 Si 0.89 22.11 29.54 -169.99 -5.02 17.09 16 21 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 23 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 24 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 25 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.08 1.51 7.13 -51.93 -0.37 1.14 16 27 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.07 0.99 7.68 -51.93 -0.40 0.59 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.33 3.82 6.72 -39.30 -0.26 3.56 16 34 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.05 0.74 7.28 -51.93 -0.38 0.36 16 36 H 0.07 1.53 8.03 -51.93 -0.42 1.11 16 37 H 0.02 0.57 7.14 -51.93 -0.37 0.20 16 38 H 0.02 0.64 8.03 -51.93 -0.42 0.23 16 39 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 314.23 15.07 4.74 4.74 Total: -1.00 -31.53 314.23 -9.27 -40.80 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -6.22 Total: 4.20 kcal Atomic # 6 Polarization: -19.51 SS G_CDS: -2.70 Total: -22.21 kcal Atomic # 7 Polarization: -44.55 SS G_CDS: -0.07 Total: -44.62 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.53 -9.27 -40.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259993129.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.759 kcal (2) G-P(sol) polarization free energy of solvation -31.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds