Wall clock time and date at job start Mon Mar 30 2020 05:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.36339 * 125.89234 * 2 1 4 4 H 0.97007 * 125.63340 * 359.97438 * 3 2 1 5 5 C 1.36339 * 108.73189 * 179.74914 * 3 2 1 6 6 C 1.50699 * 125.89418 * 180.25711 * 5 3 2 7 7 H 1.09004 * 109.90933 * 144.02800 * 6 5 3 8 8 C 1.53994 * 109.91820 * 265.13265 * 6 5 3 9 9 C 1.54596 * 105.13813 * 120.57541 * 8 6 5 10 10 C 1.54936 * 102.92226 * 21.96030 * 9 8 6 11 11 N 1.47904 * 109.91576 * 22.72024 * 6 5 3 12 12 C 1.34847 * 108.21638 * 0.36842 * 5 3 2 13 13 C 1.50706 * 126.29390 * 179.89929 * 12 5 3 14 14 C 1.34849 * 125.88984 * 179.97438 * 2 1 3 15 15 C 1.50698 * 126.29409 * 0.02562 * 14 2 1 16 16 C 1.50700 * 109.46683 * 270.01911 * 15 14 2 17 17 H 1.08001 * 120.00144 * 0.02562 * 16 15 14 18 18 C 1.37879 * 119.99753 * 179.97438 * 16 15 14 19 19 N 1.31516 * 120.00259 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00071 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47383 * 89.99895 * 20 18 16 22 22 H 1.48499 * 109.47214 * 210.00516 * 20 18 16 23 23 H 1.48506 * 109.47074 * 330.00045 * 20 18 16 24 24 H 1.08998 * 109.47683 * 270.02889 * 1 2 3 25 25 H 1.09004 * 109.47226 * 30.03291 * 1 2 3 26 26 H 1.09005 * 109.46809 * 150.02924 * 1 2 3 27 27 H 1.09004 * 110.30741 * 239.49201 * 8 6 5 28 28 H 1.09002 * 110.30778 * 1.56420 * 8 6 5 29 29 H 1.09003 * 110.71772 * 140.32010 * 9 8 6 30 30 H 1.08993 * 110.72205 * 263.41948 * 9 8 6 31 31 H 1.09000 * 110.66529 * 81.02216 * 10 9 8 32 32 H 1.09003 * 110.66153 * 203.98039 * 10 9 8 33 33 H 1.00892 * 110.99963 * 335.83164 * 11 6 5 34 34 H 1.08999 * 109.46995 * 269.71466 * 13 12 5 35 35 H 1.08994 * 109.46790 * 29.71153 * 13 12 5 36 36 H 1.08997 * 109.47305 * 149.71594 * 13 12 5 37 37 H 1.08999 * 109.47387 * 30.01867 * 15 14 2 38 38 H 1.09002 * 109.47481 * 150.01967 * 15 14 2 39 39 H 0.96998 * 119.99663 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3063 1.1045 0.0000 4 1 1.9989 2.0246 -0.0004 5 6 3.6090 0.7022 0.0057 6 6 4.8133 1.6080 0.0131 7 1 5.6056 1.1672 0.6182 8 6 5.3135 1.8277 -1.4267 9 6 5.2316 3.3546 -1.6540 10 6 5.2500 3.9211 -0.2121 11 7 4.4424 2.9351 0.5507 12 6 3.6338 -0.6460 0.0010 13 6 4.8648 -1.5155 0.0024 14 6 2.2975 -1.0925 0.0005 15 6 1.8364 -2.5272 0.0006 16 6 1.6818 -3.0049 1.4215 17 1 1.8956 -2.3363 2.2423 18 6 1.2664 -4.2952 1.6735 19 7 1.0055 -5.1093 0.6740 20 14 1.0740 -4.8873 3.4348 21 1 -0.3098 -4.6154 3.9001 22 1 1.3397 -6.3469 3.4982 23 1 2.0392 -4.1702 4.3063 24 1 -0.3634 0.0005 1.0276 25 1 -0.3634 0.8897 -0.5144 26 1 -0.3633 -0.8903 -0.5134 27 1 6.3435 1.4851 -1.5258 28 1 4.6713 1.3034 -2.1344 29 1 6.0951 3.7074 -2.2181 30 1 4.3053 3.6195 -2.1637 31 1 6.2693 3.9629 0.1718 32 1 4.7875 4.9076 -0.1805 33 1 3.4554 3.1091 0.4348 34 1 5.1623 -1.7257 -1.0249 35 1 5.6745 -0.9979 0.5166 36 1 4.6477 -2.4518 0.5165 37 1 0.8783 -2.6010 -0.5139 38 1 2.5729 -3.1456 -0.5126 39 1 0.7129 -6.0169 0.8515 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259993129.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:32 Heat of formation + Delta-G solvation = 6.399917 kcal Electronic energy + Delta-G solvation = -18318.163292 eV Core-core repulsion = 15645.449466 eV Total energy + Delta-G solvation = -2672.713826 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.31599 -39.22293 -35.45313 -33.82506 -33.12952 -30.95238 -29.98749 -29.85591 -27.94908 -25.74542 -24.51993 -22.67212 -21.61055 -19.86019 -19.50588 -18.43839 -18.33387 -16.55453 -16.44406 -16.09236 -15.42350 -15.15986 -14.76349 -14.30314 -14.10354 -13.90792 -13.85395 -13.68207 -13.26615 -13.08254 -13.03137 -12.84160 -12.59566 -12.55103 -12.43555 -12.29891 -12.02428 -11.82865 -11.56669 -11.47391 -11.38607 -10.51537 -9.73735 -9.10837 -8.47866 -8.07634 -6.21940 1.38398 1.41191 1.41475 1.52670 2.16335 2.40923 2.48994 3.18414 3.27273 3.74362 3.83072 3.99916 4.22812 4.27261 4.44749 4.53362 4.57295 4.58699 4.72520 4.82378 4.83587 4.93012 4.97597 5.00490 5.05702 5.10575 5.18266 5.20327 5.28248 5.40206 5.47419 5.66385 5.69809 5.86350 5.90340 6.24175 6.25369 6.42891 6.52399 6.89951 6.97385 7.45429 8.98015 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.033520 B = 0.005462 C = 0.005255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.113304 B = 5124.724846 C = 5327.126747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.005 4.005 3 N -0.544 5.544 4 H 0.417 0.583 5 C 0.012 3.988 6 C 0.155 3.845 7 H 0.095 0.905 8 C -0.141 4.141 9 C -0.150 4.150 10 C 0.042 3.958 11 N -0.679 5.679 12 C -0.183 4.183 13 C -0.068 4.068 14 C -0.154 4.154 15 C 0.098 3.902 16 C -0.511 4.511 17 H 0.044 0.956 18 C 0.004 3.996 19 N -0.933 5.933 20 Si 0.958 3.042 21 H -0.271 1.271 22 H -0.280 1.280 23 H -0.271 1.271 24 H 0.064 0.936 25 H 0.085 0.915 26 H 0.060 0.940 27 H 0.083 0.917 28 H 0.056 0.944 29 H 0.092 0.908 30 H 0.065 0.935 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.332 0.668 34 H 0.059 0.941 35 H 0.071 0.929 36 H 0.036 0.964 37 H -0.004 1.004 38 H -0.011 1.011 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.846 18.857 -3.780 20.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.116 4.116 3 N -0.142 5.142 4 H 0.256 0.744 5 C -0.101 4.101 6 C 0.044 3.956 7 H 0.113 0.887 8 C -0.181 4.181 9 C -0.189 4.189 10 C -0.087 4.087 11 N -0.307 5.307 12 C -0.191 4.191 13 C -0.125 4.125 14 C -0.160 4.160 15 C 0.060 3.940 16 C -0.549 4.549 17 H 0.062 0.938 18 C -0.193 4.193 19 N -0.574 5.574 20 Si 0.783 3.217 21 H -0.196 1.196 22 H -0.205 1.205 23 H -0.195 1.195 24 H 0.083 0.917 25 H 0.104 0.896 26 H 0.079 0.921 27 H 0.102 0.898 28 H 0.075 0.925 29 H 0.110 0.890 30 H 0.084 0.916 31 H 0.107 0.893 32 H 0.111 0.889 33 H 0.148 0.852 34 H 0.078 0.922 35 H 0.090 0.910 36 H 0.056 0.944 37 H 0.014 0.986 38 H 0.007 0.993 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 7.140 18.832 -3.187 20.391 hybrid contribution -0.929 -0.762 -0.145 1.211 sum 6.211 18.070 -3.333 19.396 Atomic orbital electron populations 1.20144 0.87262 1.02753 1.02326 1.20176 0.93936 0.85699 1.11799 1.41364 1.04757 1.07616 1.60490 0.74372 1.20121 0.85241 0.93376 1.11342 1.20823 0.91791 0.87714 0.95262 0.88741 1.22853 1.02284 0.97402 0.95544 1.23091 1.03161 0.93935 0.98705 1.23253 0.99648 0.95571 0.90257 1.62911 1.10123 1.01726 1.55953 1.19390 0.94876 0.93041 1.11793 1.19999 0.93943 0.97725 1.00856 1.19809 0.93377 0.95370 1.07478 1.17306 0.93614 0.87837 0.95223 1.21356 1.43894 0.96848 0.92811 0.93785 1.25853 0.95333 0.96909 1.01230 1.70088 1.47571 1.06981 1.32751 0.85552 0.78718 0.77385 0.80026 1.19637 1.20524 1.19522 0.91691 0.89579 0.92148 0.89785 0.92510 0.88987 0.91590 0.89343 0.88850 0.85179 0.92249 0.90972 0.94450 0.98611 0.99268 0.92854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.29 10.21 71.24 0.73 -1.56 16 2 C -0.01 -0.20 7.16 41.08 0.29 0.09 16 3 N -0.54 -17.00 5.79 -171.13 -0.99 -17.99 16 4 H 0.42 9.63 7.43 -92.70 -0.69 8.94 16 5 C 0.01 0.40 5.88 41.08 0.24 0.64 16 6 C 0.15 3.91 3.58 44.31 0.16 4.07 16 7 H 0.09 2.52 7.35 -2.39 -0.02 2.51 16 8 C -0.14 -2.94 6.56 31.47 0.21 -2.74 16 9 C -0.15 -2.26 7.06 31.80 0.22 -2.03 16 10 C 0.04 0.62 7.55 86.65 0.65 1.28 16 11 N -0.68 -14.47 7.39 -484.02 -3.58 -18.05 16 12 C -0.18 -7.63 6.14 -19.99 -0.12 -7.76 16 13 C -0.07 -2.60 9.91 71.24 0.71 -1.90 16 14 C -0.15 -7.34 5.33 -19.99 -0.11 -7.44 16 15 C 0.10 5.57 5.00 29.10 0.15 5.72 16 16 C -0.51 -30.69 9.09 25.60 0.23 -30.46 16 17 H 0.04 2.66 7.74 -2.91 -0.02 2.64 16 18 C 0.00 0.23 5.46 84.65 0.46 0.69 16 19 N -0.93 -58.14 13.29 21.45 0.28 -57.86 16 20 Si 0.96 46.13 29.54 68.60 2.03 48.16 16 21 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 22 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 23 H -0.27 -12.75 7.11 99.48 0.71 -12.05 16 24 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 25 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 26 H 0.06 2.30 7.13 -2.38 -0.02 2.28 16 27 H 0.08 1.56 8.14 -2.38 -0.02 1.55 16 28 H 0.06 1.40 7.68 -2.39 -0.02 1.39 16 29 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.33 6.58 6.72 -89.70 -0.60 5.97 16 34 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.07 2.30 7.28 -2.39 -0.02 2.28 16 36 H 0.04 1.65 8.03 -2.39 -0.02 1.63 16 37 H 0.00 -0.26 7.14 -2.39 -0.02 -0.28 16 38 H -0.01 -0.68 8.03 -2.39 -0.02 -0.70 16 39 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -71.15 314.23 1.32 -69.83 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: -0.24 Total: 17.31 kcal Atomic # 6 Polarization: -45.22 SS G_CDS: 3.82 Total: -41.40 kcal Atomic # 7 Polarization: -89.61 SS G_CDS: -4.28 Total: -93.90 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal Total: -71.15 1.32 -69.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259993129.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.226 kcal (2) G-P(sol) polarization free energy of solvation -71.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds