Wall clock time and date at job start Mon Mar 30 2020 05:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30838 * 125.90021 * 2 1 4 4 N 1.40088 * 108.20068 * 179.74332 * 3 2 1 5 5 C 1.46503 * 126.03204 * 180.22797 * 4 3 2 6 6 C 1.54265 * 110.03353 * 213.06209 * 5 4 3 7 7 C 1.54960 * 104.16327 * 217.14005 * 6 5 4 8 8 C 1.54897 * 102.77600 * 37.88840 * 7 6 5 9 9 C 1.53878 * 110.02787 * 95.84965 * 5 4 3 10 10 C 1.34940 * 107.93023 * 0.36844 * 4 3 2 11 11 C 1.35317 * 107.74438 * 359.63568 * 10 4 3 12 12 C 1.50703 * 126.04130 * 180.25149 * 11 10 4 13 13 H 1.08996 * 109.47189 * 179.97438 * 12 11 10 14 14 C 1.53008 * 109.47043 * 299.97964 * 12 11 10 15 15 C 1.50702 * 109.46834 * 59.97399 * 12 11 10 16 16 H 1.07994 * 120.00292 * 0.02562 * 15 12 11 17 17 C 1.37880 * 119.99684 * 179.97438 * 15 12 11 18 18 N 1.31509 * 120.00200 * 0.02562 * 17 15 12 19 19 Si 1.86800 * 119.99920 * 180.02562 * 17 15 12 20 20 H 1.48500 * 109.47304 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47294 * 120.00026 * 19 17 15 22 22 H 1.48503 * 109.46930 * 240.00277 * 19 17 15 23 23 H 1.09005 * 109.47101 * 270.04126 * 1 2 3 24 24 H 1.08994 * 109.47093 * 30.04116 * 1 2 3 25 25 H 1.09000 * 109.47465 * 150.04521 * 1 2 3 26 26 H 1.08997 * 110.01728 * 334.46246 * 5 4 3 27 27 H 1.09001 * 110.48743 * 335.79263 * 6 5 4 28 28 H 1.09000 * 110.48185 * 98.43353 * 6 5 4 29 29 H 1.09004 * 110.72032 * 279.58003 * 7 6 5 30 30 H 1.08999 * 110.76679 * 156.22233 * 7 6 5 31 31 H 1.08999 * 110.48656 * 203.40352 * 8 7 6 32 32 H 1.08997 * 110.59676 * 80.81829 * 8 7 6 33 33 H 1.08999 * 110.03246 * 238.56829 * 9 5 4 34 34 H 1.09000 * 110.03573 * 359.97438 * 9 5 4 35 35 H 1.08002 * 126.13053 * 179.90865 * 10 4 3 36 36 H 1.09002 * 109.47049 * 59.99493 * 14 12 11 37 37 H 1.08997 * 109.46692 * 179.97438 * 14 12 11 38 38 H 1.09000 * 109.46650 * 299.99817 * 14 12 11 39 39 H 0.96998 * 120.00167 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6339 0.0060 5 6 4.7899 1.5006 0.0127 6 6 5.9384 0.8349 -0.7732 7 6 7.2124 1.2140 0.0232 8 6 6.7331 1.1352 1.4940 9 6 5.2950 1.6919 1.4536 10 6 3.6142 -0.7154 0.0013 11 6 2.3271 -1.1331 0.0008 12 6 1.8598 -2.5658 0.0016 13 1 0.7702 -2.5926 0.0014 14 6 2.3877 -3.2751 -1.2472 15 6 2.3793 -3.2629 1.2325 16 1 2.9866 -2.7225 1.9434 17 6 2.0782 -4.5905 1.4517 18 7 1.3382 -5.2485 0.5863 19 14 2.7215 -5.4545 2.9778 20 1 3.5238 -4.5009 3.7854 21 1 1.5779 -5.9484 3.7861 22 1 3.5747 -6.6011 2.5749 23 1 -0.3633 0.0007 1.0277 24 1 -0.3633 0.8896 -0.5144 25 1 -0.3634 -0.8904 -0.5131 26 1 4.5462 2.4669 -0.4289 27 1 5.8094 -0.2473 -0.7938 28 1 5.9883 1.2334 -1.7865 29 1 7.5352 2.2253 -0.2242 30 1 8.0116 0.4962 -0.1616 31 1 7.3634 1.7525 2.1342 32 1 6.7327 0.1024 1.8424 33 1 5.2973 2.7511 1.7109 34 1 4.6611 1.1403 2.1478 35 1 4.4891 -1.3487 0.0025 36 1 3.4774 -3.2482 -1.2470 37 1 2.0500 -4.3114 -1.2464 38 1 2.0120 -2.7708 -2.1375 39 1 1.1267 -6.1825 0.7403 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260016583.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:52 Heat of formation + Delta-G solvation = 37.719929 kcal Electronic energy + Delta-G solvation = -18449.964410 eV Core-core repulsion = 15778.608722 eV Total energy + Delta-G solvation = -2671.355688 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.17112 -38.94043 -36.24928 -33.89204 -32.86232 -30.32579 -29.86991 -29.24630 -27.14969 -26.88523 -23.91692 -21.70746 -21.57889 -20.48373 -20.12298 -18.12102 -17.87325 -16.76474 -16.52885 -15.61290 -15.30715 -15.22910 -14.65171 -14.33230 -14.31701 -13.76911 -13.64746 -13.40215 -12.92529 -12.83999 -12.80496 -12.78344 -12.44979 -12.24243 -12.12779 -12.11046 -12.03824 -11.88173 -11.65397 -11.50149 -11.00595 -10.89847 -10.40055 -9.92050 -8.92246 -8.02050 -6.14942 1.07926 1.41054 1.43464 1.53929 1.72729 2.05849 2.48878 3.24320 3.39301 3.56783 3.87232 3.98565 4.06812 4.27108 4.38564 4.41419 4.46669 4.56968 4.68720 4.76328 4.82891 4.84300 4.93924 4.98698 5.00676 5.12285 5.14954 5.20093 5.22812 5.30897 5.35793 5.39705 5.40610 5.67090 5.95897 6.03932 6.17911 6.39438 6.47435 6.92885 6.97914 7.52169 9.01827 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.019609 B = 0.007161 C = 0.005991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.568288 B = 3909.107747 C = 4672.548786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.048 3.952 3 N -0.328 5.328 4 N -0.371 5.371 5 C 0.151 3.849 6 C -0.136 4.136 7 C -0.109 4.109 8 C -0.122 4.122 9 C -0.134 4.134 10 C 0.052 3.948 11 C -0.212 4.212 12 C 0.111 3.889 13 H 0.008 0.992 14 C -0.117 4.117 15 C -0.512 4.512 16 H 0.043 0.957 17 C 0.015 3.985 18 N -0.917 5.917 19 Si 0.948 3.052 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.278 1.278 23 H 0.075 0.925 24 H 0.083 0.917 25 H 0.071 0.929 26 H 0.105 0.895 27 H 0.067 0.933 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.055 0.945 33 H 0.091 0.909 34 H 0.043 0.957 35 H 0.170 0.830 36 H 0.027 0.973 37 H 0.058 0.942 38 H 0.018 0.982 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.958 12.726 -1.398 16.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.116 4.116 3 N -0.152 5.152 4 N -0.154 5.154 5 C 0.050 3.950 6 C -0.174 4.174 7 C -0.147 4.147 8 C -0.160 4.160 9 C -0.172 4.172 10 C -0.093 4.093 11 C -0.223 4.223 12 C 0.091 3.909 13 H 0.026 0.974 14 C -0.175 4.175 15 C -0.551 4.551 16 H 0.061 0.939 17 C -0.183 4.183 18 N -0.557 5.557 19 Si 0.774 3.226 20 H -0.197 1.197 21 H -0.208 1.208 22 H -0.204 1.204 23 H 0.093 0.907 24 H 0.102 0.898 25 H 0.090 0.910 26 H 0.123 0.877 27 H 0.085 0.915 28 H 0.107 0.893 29 H 0.110 0.890 30 H 0.103 0.897 31 H 0.108 0.892 32 H 0.074 0.926 33 H 0.110 0.890 34 H 0.061 0.939 35 H 0.187 0.813 36 H 0.046 0.954 37 H 0.077 0.923 38 H 0.037 0.963 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 10.044 13.926 -1.426 17.229 hybrid contribution -0.076 -1.761 0.837 1.951 sum 9.968 12.165 -0.589 15.738 Atomic orbital electron populations 1.20115 0.85922 1.03113 1.02953 1.22617 0.97908 0.90525 1.00591 1.76989 0.87615 1.23069 1.27547 1.48778 1.04775 1.04349 1.57493 1.22244 0.81216 0.93642 0.97855 1.22864 0.93645 1.01073 0.99857 1.22464 0.95807 1.03264 0.93178 1.22372 0.94346 1.01141 0.98131 1.22602 0.97575 1.02625 0.94447 1.22045 0.99087 0.84918 1.03259 1.20579 0.92456 0.97104 1.12123 1.17012 0.94522 0.85755 0.93569 0.97371 1.21600 0.98254 1.01662 0.95998 1.21438 1.31631 0.95476 1.06545 0.93899 1.25644 0.95511 0.98133 0.98982 1.70009 1.38885 1.10107 1.36681 0.85658 0.78186 0.78496 0.80219 1.19712 1.20773 1.20416 0.90677 0.89847 0.90974 0.87654 0.91475 0.89306 0.88975 0.89720 0.89204 0.92586 0.88996 0.93854 0.81266 0.95401 0.92339 0.96260 0.93038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.22 10.11 71.24 0.72 -1.50 16 2 C 0.05 2.05 7.22 43.10 0.31 2.36 16 3 N -0.33 -13.32 12.58 -47.38 -0.60 -13.91 16 4 N -0.37 -13.46 3.44 -324.05 -1.12 -14.58 16 5 C 0.15 3.96 4.00 45.72 0.18 4.14 16 6 C -0.14 -2.87 6.38 31.69 0.20 -2.67 16 7 C -0.11 -1.69 6.91 31.91 0.22 -1.47 16 8 C -0.12 -2.26 6.83 31.67 0.22 -2.05 16 9 C -0.13 -3.15 6.59 31.32 0.21 -2.94 16 10 C 0.05 2.11 9.81 83.54 0.82 2.92 16 11 C -0.21 -9.76 4.78 -20.14 -0.10 -9.86 16 12 C 0.11 5.77 2.62 -12.28 -0.03 5.74 16 13 H 0.01 0.46 6.91 -2.39 -0.02 0.44 16 14 C -0.12 -5.83 8.85 71.98 0.64 -5.19 16 15 C -0.51 -28.66 8.40 25.60 0.21 -28.44 16 16 H 0.04 2.43 7.71 -2.91 -0.02 2.40 16 17 C 0.02 0.86 5.30 84.66 0.45 1.31 16 18 N -0.92 -52.91 11.32 21.45 0.24 -52.67 16 19 Si 0.95 43.98 29.54 68.60 2.03 46.01 16 20 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 21 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 22 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 23 H 0.07 2.56 8.14 -2.38 -0.02 2.54 16 24 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 25 H 0.07 2.62 7.23 -2.39 -0.02 2.61 16 26 H 0.11 2.54 8.14 -2.39 -0.02 2.52 16 27 H 0.07 1.66 5.97 -2.39 -0.01 1.65 16 28 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.04 1.31 7.92 -2.39 -0.02 1.29 16 35 H 0.17 6.49 6.92 -2.91 -0.02 6.47 16 36 H 0.03 1.29 8.00 -2.39 -0.02 1.27 16 37 H 0.06 3.18 6.07 -2.39 -0.01 3.16 16 38 H 0.02 0.85 8.14 -2.39 -0.02 0.84 16 39 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 Total: -1.00 -64.96 312.45 5.62 -59.34 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: 1.01 Total: 13.44 kcal Atomic # 6 Polarization: -41.68 SS G_CDS: 4.05 Total: -37.63 kcal Atomic # 7 Polarization: -79.69 SS G_CDS: -1.47 Total: -81.16 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -64.96 5.62 -59.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260016583.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.061 kcal (2) G-P(sol) polarization free energy of solvation -64.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds