Wall clock time and date at job start Mon Mar 30 2020 05:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30844 * 125.89969 * 2 1 4 4 N 1.40078 * 108.20890 * 179.73651 * 3 2 1 5 5 C 1.46495 * 126.04021 * 179.97438 * 4 3 2 6 6 C 1.54269 * 110.03524 * 212.88243 * 5 4 3 7 7 C 1.54966 * 104.16168 * 217.13426 * 6 5 4 8 8 C 1.54891 * 102.77365 * 37.89067 * 7 6 5 9 9 C 1.53882 * 110.03256 * 95.66363 * 5 4 3 10 10 C 1.34957 * 107.92650 * 0.02562 * 4 3 2 11 11 C 1.35317 * 107.74055 * 359.97438 * 10 4 3 12 12 C 1.50701 * 126.03591 * 180.02562 * 11 10 4 13 13 H 1.09000 * 109.47194 * 179.97438 * 12 11 10 14 14 C 1.53002 * 109.47068 * 59.95209 * 12 11 10 15 15 C 1.50694 * 109.47500 * 299.95250 * 12 11 10 16 16 H 1.08000 * 119.99947 * 359.97438 * 15 12 11 17 17 C 1.37876 * 120.00495 * 179.97438 * 15 12 11 18 18 N 1.31522 * 119.99697 * 0.02562 * 17 15 12 19 19 Si 1.86802 * 120.00481 * 179.97438 * 17 15 12 20 20 H 1.48500 * 109.46768 * 60.00511 * 19 17 15 21 21 H 1.48493 * 109.47232 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47119 * 300.00560 * 19 17 15 23 23 H 1.09005 * 109.46832 * 90.02696 * 1 2 3 24 24 H 1.09004 * 109.46837 * 210.02501 * 1 2 3 25 25 H 1.08992 * 109.47200 * 330.02599 * 1 2 3 26 26 H 1.09004 * 110.01761 * 334.27864 * 5 4 3 27 27 H 1.09001 * 110.48791 * 335.78456 * 6 5 4 28 28 H 1.08997 * 110.48548 * 98.42615 * 6 5 4 29 29 H 1.09000 * 110.72039 * 279.57589 * 7 6 5 30 30 H 1.09000 * 110.76421 * 156.22046 * 7 6 5 31 31 H 1.09009 * 110.48400 * 203.40363 * 8 7 6 32 32 H 1.08998 * 110.60136 * 80.81739 * 8 7 6 33 33 H 1.08994 * 110.03169 * 238.57003 * 9 5 4 34 34 H 1.08997 * 110.03084 * 0.02562 * 9 5 4 35 35 H 1.07995 * 126.12756 * 180.02562 * 10 4 3 36 36 H 1.09000 * 109.47313 * 300.00171 * 14 12 11 37 37 H 1.08998 * 109.47362 * 59.99820 * 14 12 11 38 38 H 1.08997 * 109.47552 * 179.97438 * 14 12 11 39 39 H 0.96999 * 120.00014 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6087 0.6342 0.0061 5 6 4.7898 1.5009 0.0077 6 6 5.9388 0.8298 -0.7730 7 6 7.2124 1.2145 0.0216 8 6 6.7322 1.1457 1.4925 9 6 5.2941 1.7022 1.4475 10 6 3.6143 -0.7153 0.0092 11 6 2.3272 -1.1329 0.0058 12 6 1.8600 -2.5657 0.0080 13 1 0.7703 -2.5926 0.0046 14 6 2.3841 -3.2711 1.2604 15 6 2.3830 -3.2666 -1.2193 16 1 2.9924 -2.7283 -1.9301 17 6 2.0836 -4.5951 -1.4348 18 7 1.3410 -5.2505 -0.5695 19 14 2.7313 -5.4637 -2.9565 20 1 4.2158 -5.4266 -2.9533 21 1 2.2710 -6.8755 -2.9542 22 1 2.2216 -4.7792 -4.1718 23 1 -0.3633 -0.0005 -1.0277 24 1 -0.3633 -0.8898 0.5142 25 1 -0.3633 0.8901 0.5134 26 1 4.5464 2.4641 -0.4407 27 1 5.8099 -0.2525 -0.7862 28 1 5.9893 1.2212 -1.7890 29 1 7.5353 2.2241 -0.2326 30 1 8.0117 0.4954 -0.1578 31 1 7.3620 1.7675 2.1289 32 1 6.7316 0.1153 1.8480 33 1 5.2962 2.7631 1.6975 34 1 4.6602 1.1547 2.1450 35 1 4.4891 -1.3484 0.0144 36 1 3.4738 -3.2443 1.2634 37 1 2.0059 -2.7642 2.1481 38 1 2.0459 -4.3073 1.2623 39 1 1.1300 -6.1851 -0.7213 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260016590.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:54 Heat of formation + Delta-G solvation = 53.521519 kcal Electronic energy + Delta-G solvation = -18432.522076 eV Core-core repulsion = 15761.851596 eV Total energy + Delta-G solvation = -2670.670480 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.64489 -37.88176 -34.30733 -32.41119 -30.92866 -29.08668 -28.88826 -27.60891 -25.59428 -24.99076 -22.26709 -20.77213 -20.09920 -19.05434 -18.54132 -16.60270 -15.97109 -15.75053 -14.65928 -14.15292 -14.11563 -13.76288 -13.28597 -12.88075 -12.71645 -12.43967 -11.99381 -11.64941 -11.47084 -11.42535 -11.25265 -11.23279 -11.19175 -10.90291 -10.76781 -10.74923 -10.66103 -10.44492 -10.13232 -9.90163 -9.17343 -8.87638 -8.38898 -8.27264 -7.25065 -5.91222 -3.96570 2.65263 3.09795 3.34824 3.39677 3.42089 3.75395 4.38896 4.48917 4.50963 4.79312 5.22324 5.25783 5.32434 5.38706 5.39530 5.48323 5.55117 5.67519 5.73910 5.77438 5.92348 5.98332 6.06454 6.18537 6.19637 6.25037 6.40760 6.68166 6.70046 6.92829 7.08024 7.20352 7.37237 7.61993 7.81428 7.86064 8.09389 8.22149 8.52373 8.60418 9.05990 9.67143 11.14132 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.021036 B = 0.006844 C = 0.005855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.725607 B = 4090.353648 C = 4781.450847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.063 3.937 3 N -0.319 5.319 4 N -0.381 5.381 5 C 0.166 3.834 6 C -0.138 4.138 7 C -0.121 4.121 8 C -0.124 4.124 9 C -0.136 4.136 10 C 0.042 3.958 11 C -0.175 4.175 12 C 0.107 3.893 13 H 0.034 0.966 14 C -0.129 4.129 15 C -0.500 4.500 16 H 0.052 0.948 17 C 0.060 3.940 18 N -0.892 5.892 19 Si 0.888 3.112 20 H -0.279 1.279 21 H -0.288 1.288 22 H -0.278 1.278 23 H 0.070 0.930 24 H 0.078 0.922 25 H 0.059 0.941 26 H 0.094 0.906 27 H 0.085 0.915 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.162 0.838 36 H 0.022 0.978 37 H 0.005 0.995 38 H 0.082 0.918 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.118 11.426 2.872 14.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.103 4.103 3 N -0.142 5.142 4 N -0.165 5.165 5 C 0.063 3.937 6 C -0.177 4.177 7 C -0.159 4.159 8 C -0.162 4.162 9 C -0.175 4.175 10 C -0.100 4.100 11 C -0.186 4.186 12 C 0.088 3.912 13 H 0.052 0.948 14 C -0.187 4.187 15 C -0.539 4.539 16 H 0.070 0.930 17 C -0.140 4.140 18 N -0.531 5.531 19 Si 0.716 3.284 20 H -0.205 1.205 21 H -0.214 1.214 22 H -0.204 1.204 23 H 0.089 0.911 24 H 0.097 0.903 25 H 0.078 0.922 26 H 0.112 0.888 27 H 0.103 0.897 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.179 0.821 36 H 0.041 0.959 37 H 0.024 0.976 38 H 0.101 0.899 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 8.187 12.590 2.898 15.295 hybrid contribution 0.474 -1.414 -0.913 1.748 sum 8.661 11.176 1.986 14.278 Atomic orbital electron populations 1.20072 0.87595 1.02297 1.02413 1.22243 0.96507 0.90999 1.00525 1.77044 0.86722 1.23137 1.27258 1.48401 1.04216 1.04470 1.59439 1.21703 0.82158 0.93644 0.96210 1.22848 0.93361 1.02394 0.99081 1.22468 0.96932 1.01625 0.94848 1.22368 0.95469 1.01598 0.96765 1.22620 0.96824 1.01706 0.96340 1.22004 0.99587 0.83850 1.04587 1.20714 0.90973 0.97953 1.08931 1.17202 0.96196 0.83876 0.93956 0.94765 1.21766 0.98091 1.03180 0.95634 1.21154 1.31659 0.94977 1.06096 0.92993 1.24946 0.95288 0.97483 0.96284 1.69877 1.37942 1.09988 1.35327 0.86726 0.79191 0.78597 0.83857 1.20463 1.21357 1.20422 0.91138 0.90315 0.92202 0.88782 0.89692 0.90633 0.91238 0.90924 0.91435 0.91188 0.90952 0.90728 0.82087 0.95913 0.97563 0.89944 0.93072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.16 10.11 36.00 0.36 -0.79 16 2 C 0.06 1.33 7.22 -82.40 -0.59 0.73 16 3 N -0.32 -6.55 12.58 33.67 0.42 -6.12 16 4 N -0.38 -7.06 3.44 -53.77 -0.19 -7.24 16 5 C 0.17 2.32 4.00 -66.81 -0.27 2.05 16 6 C -0.14 -1.67 6.38 -25.03 -0.16 -1.83 16 7 C -0.12 -1.14 6.91 -24.70 -0.17 -1.31 16 8 C -0.12 -1.25 6.83 -25.07 -0.17 -1.42 16 9 C -0.14 -1.65 6.60 -25.61 -0.17 -1.81 16 10 C 0.04 0.86 9.81 -17.22 -0.17 0.69 16 11 C -0.18 -3.98 4.78 -105.05 -0.50 -4.49 16 12 C 0.11 2.72 2.62 -92.93 -0.24 2.48 16 13 H 0.03 0.93 6.91 -51.93 -0.36 0.57 16 14 C -0.13 -3.15 8.85 37.16 0.33 -2.82 16 15 C -0.50 -13.75 8.40 -34.44 -0.29 -14.04 16 16 H 0.05 1.44 7.71 -52.49 -0.40 1.03 16 17 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 18 N -0.89 -25.37 11.32 55.43 0.63 -24.74 16 19 Si 0.89 21.35 29.54 -169.99 -5.02 16.32 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 24 H 0.08 1.40 7.23 -51.93 -0.38 1.02 16 25 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 26 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 27 H 0.08 1.16 5.96 -51.93 -0.31 0.85 16 28 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.57 8.14 -51.92 -0.42 0.14 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.07 1.07 7.92 -51.93 -0.41 0.65 16 35 H 0.16 3.09 6.91 -52.49 -0.36 2.73 16 36 H 0.02 0.52 8.00 -51.93 -0.42 0.10 16 37 H 0.01 0.12 8.14 -51.93 -0.42 -0.30 16 38 H 0.08 2.19 6.07 -51.93 -0.32 1.88 16 39 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 312.44 15.07 4.71 4.71 Total: -1.00 -30.14 312.44 -7.90 -38.04 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -6.32 Total: 0.01 kcal Atomic # 6 Polarization: -18.84 SS G_CDS: -2.14 Total: -20.98 kcal Atomic # 7 Polarization: -38.97 SS G_CDS: 0.87 Total: -38.11 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.14 -7.90 -38.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260016590.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.562 kcal (2) G-P(sol) polarization free energy of solvation -30.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds