Wall clock time and date at job start Mon Mar 30 2020 05:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30844 * 125.89969 * 2 1 4 4 N 1.40078 * 108.20890 * 179.73651 * 3 2 1 5 5 C 1.46495 * 126.04021 * 179.97438 * 4 3 2 6 6 C 1.54269 * 110.03524 * 212.88243 * 5 4 3 7 7 C 1.54966 * 104.16168 * 217.13426 * 6 5 4 8 8 C 1.54891 * 102.77365 * 37.89067 * 7 6 5 9 9 C 1.53882 * 110.03256 * 95.66363 * 5 4 3 10 10 C 1.34957 * 107.92650 * 0.02562 * 4 3 2 11 11 C 1.35317 * 107.74055 * 359.97438 * 10 4 3 12 12 C 1.50701 * 126.03591 * 180.02562 * 11 10 4 13 13 H 1.09000 * 109.47194 * 179.97438 * 12 11 10 14 14 C 1.53002 * 109.47068 * 59.95209 * 12 11 10 15 15 C 1.50694 * 109.47500 * 299.95250 * 12 11 10 16 16 H 1.08000 * 119.99947 * 359.97438 * 15 12 11 17 17 C 1.37876 * 120.00495 * 179.97438 * 15 12 11 18 18 N 1.31522 * 119.99697 * 0.02562 * 17 15 12 19 19 Si 1.86802 * 120.00481 * 179.97438 * 17 15 12 20 20 H 1.48500 * 109.46768 * 60.00511 * 19 17 15 21 21 H 1.48493 * 109.47232 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47119 * 300.00560 * 19 17 15 23 23 H 1.09005 * 109.46832 * 90.02696 * 1 2 3 24 24 H 1.09004 * 109.46837 * 210.02501 * 1 2 3 25 25 H 1.08992 * 109.47200 * 330.02599 * 1 2 3 26 26 H 1.09004 * 110.01761 * 334.27864 * 5 4 3 27 27 H 1.09001 * 110.48791 * 335.78456 * 6 5 4 28 28 H 1.08997 * 110.48548 * 98.42615 * 6 5 4 29 29 H 1.09000 * 110.72039 * 279.57589 * 7 6 5 30 30 H 1.09000 * 110.76421 * 156.22046 * 7 6 5 31 31 H 1.09009 * 110.48400 * 203.40363 * 8 7 6 32 32 H 1.08998 * 110.60136 * 80.81739 * 8 7 6 33 33 H 1.08994 * 110.03169 * 238.57003 * 9 5 4 34 34 H 1.08997 * 110.03084 * 0.02562 * 9 5 4 35 35 H 1.07995 * 126.12756 * 180.02562 * 10 4 3 36 36 H 1.09000 * 109.47313 * 300.00171 * 14 12 11 37 37 H 1.08998 * 109.47362 * 59.99820 * 14 12 11 38 38 H 1.08997 * 109.47552 * 179.97438 * 14 12 11 39 39 H 0.96999 * 120.00014 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6087 0.6342 0.0061 5 6 4.7898 1.5009 0.0077 6 6 5.9388 0.8298 -0.7730 7 6 7.2124 1.2145 0.0216 8 6 6.7322 1.1457 1.4925 9 6 5.2941 1.7022 1.4475 10 6 3.6143 -0.7153 0.0092 11 6 2.3272 -1.1329 0.0058 12 6 1.8600 -2.5657 0.0080 13 1 0.7703 -2.5926 0.0046 14 6 2.3841 -3.2711 1.2604 15 6 2.3830 -3.2666 -1.2193 16 1 2.9924 -2.7283 -1.9301 17 6 2.0836 -4.5951 -1.4348 18 7 1.3410 -5.2505 -0.5695 19 14 2.7313 -5.4637 -2.9565 20 1 4.2158 -5.4266 -2.9533 21 1 2.2710 -6.8755 -2.9542 22 1 2.2216 -4.7792 -4.1718 23 1 -0.3633 -0.0005 -1.0277 24 1 -0.3633 -0.8898 0.5142 25 1 -0.3633 0.8901 0.5134 26 1 4.5464 2.4641 -0.4407 27 1 5.8099 -0.2525 -0.7862 28 1 5.9893 1.2212 -1.7890 29 1 7.5353 2.2241 -0.2326 30 1 8.0117 0.4954 -0.1578 31 1 7.3620 1.7675 2.1289 32 1 6.7316 0.1153 1.8480 33 1 5.2962 2.7631 1.6975 34 1 4.6602 1.1547 2.1450 35 1 4.4891 -1.3484 0.0144 36 1 3.4738 -3.2443 1.2634 37 1 2.0059 -2.7642 2.1481 38 1 2.0459 -4.3073 1.2623 39 1 1.1300 -6.1851 -0.7213 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260016590.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:54 Heat of formation + Delta-G solvation = 37.900363 kcal Electronic energy + Delta-G solvation = -18433.199460 eV Core-core repulsion = 15761.851596 eV Total energy + Delta-G solvation = -2671.347864 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.17143 -38.93901 -36.24610 -33.88996 -32.85831 -30.32493 -29.87082 -29.24153 -27.14702 -26.88125 -23.91640 -21.72087 -21.56050 -20.48531 -20.10947 -18.14760 -17.84544 -16.75377 -16.52266 -15.60496 -15.32186 -15.23138 -14.64756 -14.33369 -14.31068 -13.76445 -13.64299 -13.38479 -12.92749 -12.81686 -12.80173 -12.78232 -12.43634 -12.31937 -12.10921 -12.10427 -12.03031 -11.86213 -11.66631 -11.48170 -11.00336 -10.91307 -10.38862 -9.91999 -8.92286 -8.01210 -6.14335 1.07914 1.43623 1.44815 1.52218 1.72590 2.05952 2.49571 3.24999 3.38955 3.56976 3.87630 3.98804 4.06805 4.26814 4.39035 4.41714 4.47091 4.57315 4.68990 4.76204 4.83122 4.84434 4.93481 4.99213 5.00879 5.12553 5.15487 5.19972 5.22841 5.30667 5.35682 5.39619 5.40897 5.67061 5.95821 6.04023 6.17750 6.39332 6.47665 6.93021 6.97954 7.52657 9.02331 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.021036 B = 0.006844 C = 0.005855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.725607 B = 4090.353648 C = 4781.450847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.048 3.952 3 N -0.328 5.328 4 N -0.371 5.371 5 C 0.151 3.849 6 C -0.138 4.138 7 C -0.110 4.110 8 C -0.121 4.121 9 C -0.131 4.131 10 C 0.052 3.948 11 C -0.212 4.212 12 C 0.112 3.888 13 H 0.008 0.992 14 C -0.117 4.117 15 C -0.515 4.515 16 H 0.044 0.956 17 C 0.016 3.984 18 N -0.917 5.917 19 Si 0.948 3.052 20 H -0.271 1.271 21 H -0.283 1.283 22 H -0.277 1.277 23 H 0.075 0.925 24 H 0.071 0.929 25 H 0.082 0.918 26 H 0.103 0.897 27 H 0.065 0.935 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.059 0.941 33 H 0.092 0.908 34 H 0.048 0.952 35 H 0.170 0.830 36 H 0.026 0.974 37 H 0.017 0.983 38 H 0.058 0.942 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.961 12.706 2.486 16.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.116 4.116 3 N -0.152 5.152 4 N -0.154 5.154 5 C 0.050 3.950 6 C -0.177 4.177 7 C -0.148 4.148 8 C -0.158 4.158 9 C -0.170 4.170 10 C -0.093 4.093 11 C -0.222 4.222 12 C 0.092 3.908 13 H 0.026 0.974 14 C -0.175 4.175 15 C -0.553 4.553 16 H 0.062 0.938 17 C -0.183 4.183 18 N -0.557 5.557 19 Si 0.774 3.226 20 H -0.196 1.196 21 H -0.209 1.209 22 H -0.203 1.203 23 H 0.094 0.906 24 H 0.090 0.910 25 H 0.101 0.899 26 H 0.121 0.879 27 H 0.084 0.916 28 H 0.102 0.898 29 H 0.109 0.891 30 H 0.102 0.898 31 H 0.109 0.891 32 H 0.077 0.923 33 H 0.110 0.890 34 H 0.067 0.933 35 H 0.187 0.813 36 H 0.045 0.955 37 H 0.036 0.964 38 H 0.077 0.923 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 10.044 13.900 2.517 17.333 hybrid contribution -0.064 -1.742 -0.772 1.906 sum 9.980 12.158 1.744 15.826 Atomic orbital electron populations 1.20115 0.85929 1.03077 1.02986 1.22616 0.97906 0.90524 1.00596 1.76989 0.87612 1.23073 1.27548 1.48778 1.04767 1.04349 1.57504 1.22241 0.81125 0.93464 0.98163 1.22874 0.93982 1.00990 0.99829 1.22464 0.95649 1.03148 0.93512 1.22371 0.94353 1.01344 0.97762 1.22588 0.97566 1.02721 0.94108 1.22045 0.99071 0.84905 1.03276 1.20577 0.92456 0.97099 1.12116 1.16999 0.94510 0.85751 0.93539 0.97397 1.21599 0.98205 1.01680 0.96010 1.21390 1.31707 0.95441 1.06791 0.93757 1.25652 0.95502 0.98137 0.98965 1.70002 1.38730 1.10182 1.36773 0.85768 0.78933 0.77508 0.80363 1.19584 1.20871 1.20272 0.90613 0.91010 0.89876 0.87912 0.91593 0.89829 0.89097 0.89814 0.89077 0.92250 0.88977 0.93314 0.81274 0.95463 0.96367 0.92305 0.93039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.23 10.11 71.23 0.72 -1.50 16 2 C 0.05 2.05 7.22 43.10 0.31 2.37 16 3 N -0.33 -13.32 12.58 -47.39 -0.60 -13.91 16 4 N -0.37 -13.46 3.44 -324.04 -1.12 -14.57 16 5 C 0.15 3.96 4.00 45.72 0.18 4.14 16 6 C -0.14 -3.05 6.38 31.70 0.20 -2.85 16 7 C -0.11 -1.71 6.91 31.91 0.22 -1.49 16 8 C -0.12 -2.08 6.83 31.67 0.22 -1.86 16 9 C -0.13 -2.90 6.60 31.32 0.21 -2.69 16 10 C 0.05 2.11 9.81 83.54 0.82 2.93 16 11 C -0.21 -9.75 4.78 -20.14 -0.10 -9.85 16 12 C 0.11 5.80 2.62 -12.29 -0.03 5.77 16 13 H 0.01 0.45 6.91 -2.39 -0.02 0.43 16 14 C -0.12 -5.84 8.85 71.98 0.64 -5.20 16 15 C -0.51 -28.72 8.40 25.60 0.21 -28.51 16 16 H 0.04 2.48 7.71 -2.91 -0.02 2.46 16 17 C 0.02 0.87 5.30 84.65 0.45 1.32 16 18 N -0.92 -52.95 11.32 21.45 0.24 -52.70 16 19 Si 0.95 43.82 29.54 68.60 2.03 45.85 16 20 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 21 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 22 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 23 H 0.08 2.57 8.14 -2.38 -0.02 2.55 16 24 H 0.07 2.62 7.23 -2.39 -0.02 2.60 16 25 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 26 H 0.10 2.53 8.14 -2.38 -0.02 2.51 16 27 H 0.07 1.72 5.96 -2.39 -0.01 1.71 16 28 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.09 1.07 8.14 -2.39 -0.02 1.06 16 30 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 32 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.05 1.34 7.92 -2.39 -0.02 1.32 16 35 H 0.17 6.49 6.91 -2.91 -0.02 6.47 16 36 H 0.03 1.27 8.00 -2.39 -0.02 1.25 16 37 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.06 3.20 6.07 -2.39 -0.01 3.19 16 39 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 Total: -1.00 -64.66 312.44 5.62 -59.04 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: 1.01 Total: 13.74 kcal Atomic # 6 Polarization: -41.49 SS G_CDS: 4.05 Total: -37.43 kcal Atomic # 7 Polarization: -79.72 SS G_CDS: -1.47 Total: -81.19 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -64.66 5.62 -59.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260016590.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.937 kcal (2) G-P(sol) polarization free energy of solvation -64.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds