Wall clock time and date at job start Mon Mar 30 2020 06:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.48094 * 111.00316 * 2 1 4 4 C 1.51428 * 105.59676 * 145.92386 * 3 2 1 5 5 N 1.36963 * 142.44787 * 162.72958 * 4 3 2 6 6 H 0.96995 * 124.72279 * 359.91488 * 5 4 3 7 7 C 1.34851 * 110.55183 * 179.97438 * 5 4 3 8 8 C 1.50693 * 126.03734 * 180.02562 * 7 5 4 9 9 C 1.53006 * 109.47091 * 359.97402 * 8 7 5 10 10 C 1.52999 * 109.47383 * 119.97260 * 8 7 5 11 11 C 1.53002 * 109.47503 * 239.97506 * 8 7 5 12 12 C 1.39283 * 107.92838 * 0.02562 * 7 5 4 13 13 C 1.41352 * 127.13522 * 180.02562 * 12 7 5 14 14 H 1.07993 * 120.00600 * 0.02562 * 13 12 7 15 15 C 1.39686 * 119.99648 * 180.02562 * 13 12 7 16 16 N 1.31056 * 119.99760 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99836 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47019 * 0.02562 * 17 15 13 19 19 H 1.48496 * 109.46920 * 119.99831 * 17 15 13 20 20 H 1.48499 * 109.46936 * 239.99936 * 17 15 13 21 21 C 1.34425 * 108.56368 * 342.70960 * 4 3 2 22 22 C 1.48156 * 111.00001 * 114.23874 * 2 1 3 23 23 H 1.09003 * 109.47019 * 305.76461 * 1 2 3 24 24 H 1.08994 * 109.47015 * 65.76346 * 1 2 3 25 25 H 1.08998 * 109.46971 * 185.76323 * 1 2 3 26 26 H 1.09004 * 110.22625 * 264.96023 * 3 2 1 27 27 H 1.09001 * 110.21969 * 26.81188 * 3 2 1 28 28 H 1.09005 * 109.47102 * 59.99732 * 9 8 7 29 29 H 1.08997 * 109.47129 * 180.02562 * 9 8 7 30 30 H 1.08999 * 109.46941 * 299.99746 * 9 8 7 31 31 H 1.08997 * 109.47166 * 60.00210 * 10 8 7 32 32 H 1.08997 * 109.47628 * 180.02562 * 10 8 7 33 33 H 1.09005 * 109.46899 * 300.00322 * 10 8 7 34 34 H 1.09001 * 109.46581 * 59.99858 * 11 8 7 35 35 H 1.08997 * 109.47066 * 180.02562 * 11 8 7 36 36 H 1.08997 * 109.46880 * 299.99689 * 11 8 7 37 37 H 0.96999 * 119.99601 * 180.02562 * 16 15 13 38 38 H 1.09007 * 110.24804 * 333.12297 * 22 2 1 39 39 H 1.08994 * 110.25433 * 95.13326 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9998 1.3825 0.0000 4 6 3.2736 1.3296 0.8172 5 7 4.4260 2.0223 1.0778 6 1 4.6638 2.8713 0.6735 7 6 5.1847 1.3589 1.9738 8 6 6.5212 1.8060 2.5074 9 6 6.9010 3.1459 1.8737 10 6 6.4363 1.9662 4.0266 11 6 7.5836 0.7600 2.1635 12 6 4.5149 0.1876 2.3190 13 6 4.9460 -0.8059 3.2275 14 1 5.8906 -0.6964 3.7393 15 6 4.1500 -1.9293 3.4633 16 7 3.0039 -2.0624 2.8418 17 14 4.7193 -3.2418 4.6644 18 1 6.0374 -2.8570 5.2299 19 1 3.7285 -3.3707 5.7629 20 1 4.8444 -4.5407 3.9555 21 6 3.2684 0.1996 1.5452 22 6 2.0000 -0.5678 1.2612 23 1 -0.3633 0.6006 0.8339 24 1 -0.3633 0.4218 -0.9370 25 1 -0.3633 -1.0225 0.1032 26 1 2.2188 1.7022 -1.0189 27 1 1.2826 2.0614 0.4614 28 1 6.1442 3.8912 2.1187 29 1 7.8680 3.4691 2.2593 30 1 6.9616 3.0318 0.7914 31 1 6.1658 1.0117 4.4780 32 1 7.4029 2.2900 4.4125 33 1 5.6795 2.7115 4.2716 34 1 7.6441 0.6459 1.0811 35 1 8.5501 1.0832 2.5498 36 1 7.3130 -0.1945 2.6149 37 1 2.4510 -2.8424 3.0058 38 1 1.2835 -0.4251 2.0703 39 1 2.2206 -1.6277 1.1344 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260040334.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:21 Heat of formation + Delta-G solvation = 47.835559 kcal Electronic energy + Delta-G solvation = -19062.096986 eV Core-core repulsion = 16391.179945 eV Total energy + Delta-G solvation = -2670.917042 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.67736 -38.69080 -36.46312 -35.26457 -31.49025 -30.70157 -28.80006 -27.88416 -27.70669 -26.27125 -25.90380 -22.54453 -21.58883 -20.06419 -19.23342 -18.03569 -17.07956 -16.45860 -16.32787 -15.60330 -15.27656 -14.99275 -14.76170 -14.32737 -14.04644 -13.74777 -13.50875 -13.18910 -12.99006 -12.88434 -12.85060 -12.57296 -12.55039 -12.40568 -12.26778 -12.00047 -11.86365 -11.61565 -11.56569 -11.29456 -10.97905 -10.71415 -9.50516 -8.90696 -8.16377 -8.00123 -5.74938 1.36123 1.44668 1.56110 1.88014 2.37824 2.45980 2.67364 3.43303 3.75290 4.10502 4.18622 4.25218 4.33091 4.34393 4.56456 4.64488 4.75997 4.80034 4.84156 4.92237 4.95595 4.99835 5.02006 5.08250 5.10289 5.23551 5.25815 5.40903 5.47171 5.70146 5.70717 5.74459 5.92777 6.01044 6.15118 6.35815 6.45318 6.73297 7.06973 7.31899 7.44764 7.60341 8.79692 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.014378 B = 0.012408 C = 0.007024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.926252 B = 2256.068922 C = 3985.133729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.534 5.534 3 C 0.138 3.862 4 C -0.082 4.082 5 N -0.531 5.531 6 H 0.400 0.600 7 C -0.110 4.110 8 C 0.032 3.968 9 C -0.136 4.136 10 C -0.131 4.131 11 C -0.131 4.131 12 C 0.022 3.978 13 C -0.457 4.457 14 H 0.073 0.927 15 C 0.020 3.980 16 N -0.848 5.848 17 Si 0.964 3.036 18 H -0.262 1.262 19 H -0.279 1.279 20 H -0.278 1.278 21 C -0.205 4.205 22 C 0.159 3.841 23 H 0.023 0.977 24 H 0.088 0.912 25 H 0.069 0.931 26 H 0.084 0.916 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.076 0.924 30 H 0.051 0.949 31 H 0.045 0.955 32 H 0.069 0.931 33 H 0.039 0.961 34 H 0.038 0.962 35 H 0.069 0.931 36 H 0.045 0.955 37 H 0.266 0.734 38 H 0.006 0.994 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.602 6.971 -2.302 7.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.259 5.259 3 C 0.009 3.991 4 C -0.195 4.195 5 N -0.129 5.129 6 H 0.236 0.764 7 C -0.218 4.218 8 C 0.031 3.969 9 C -0.193 4.193 10 C -0.189 4.189 11 C -0.189 4.189 12 C 0.015 3.985 13 C -0.491 4.491 14 H 0.091 0.909 15 C -0.187 4.187 16 N -0.479 5.479 17 Si 0.788 3.212 18 H -0.186 1.186 19 H -0.204 1.204 20 H -0.204 1.204 21 C -0.216 4.216 22 C 0.032 3.968 23 H 0.041 0.959 24 H 0.107 0.893 25 H 0.088 0.912 26 H 0.102 0.898 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.095 0.905 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.088 0.912 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.088 0.912 36 H 0.064 0.936 37 H 0.076 0.924 38 H 0.024 0.976 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.625 6.613 -2.827 7.373 hybrid contribution -0.357 -0.139 1.166 1.228 sum 1.267 6.474 -1.661 6.803 Atomic orbital electron populations 1.22565 0.86796 1.02123 1.01327 1.65717 1.09278 1.14244 1.36639 1.20885 0.89467 0.90981 0.97752 1.21028 0.93322 0.97606 1.07577 1.40013 1.15110 1.20085 1.37654 0.76411 1.20297 0.98247 0.97516 1.05770 1.18622 0.88745 0.94994 0.94585 1.21814 1.01906 0.95380 1.00204 1.21819 1.00762 1.01249 0.95036 1.21819 0.97570 0.99204 1.00294 1.18049 0.91090 0.93164 0.96201 1.19054 1.04697 1.03193 1.22181 0.90928 1.26484 0.94818 1.00250 0.97195 1.70205 1.11284 1.27791 1.38668 0.85419 0.78882 0.78373 0.78477 1.18603 1.20443 1.20377 1.21305 0.98504 0.97562 1.04218 1.20825 0.90991 0.99220 0.85766 0.95855 0.89330 0.91172 0.89801 0.93080 0.92954 0.90485 0.92981 0.93588 0.91182 0.94228 0.94240 0.91177 0.93591 0.92358 0.97583 0.89768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.65 9.35 127.69 1.19 1.85 16 2 N -0.53 -22.06 5.81 -922.93 -5.36 -27.42 16 3 C 0.14 5.33 6.64 85.56 0.57 5.90 16 4 C -0.08 -3.81 8.15 41.12 0.34 -3.47 16 5 N -0.53 -22.32 5.70 -168.12 -0.96 -23.28 16 6 H 0.40 13.69 7.88 -92.71 -0.73 12.96 16 7 C -0.11 -5.01 5.65 42.34 0.24 -4.77 16 8 C 0.03 1.16 0.76 -52.93 -0.04 1.11 16 9 C -0.14 -3.81 7.49 71.98 0.54 -3.27 16 10 C -0.13 -4.68 8.32 71.98 0.60 -4.09 16 11 C -0.13 -4.72 8.32 71.98 0.60 -4.12 16 12 C 0.02 1.18 5.93 -20.04 -0.12 1.06 16 13 C -0.46 -25.13 7.68 23.39 0.18 -24.95 16 14 H 0.07 3.84 4.76 -2.91 -0.01 3.82 16 15 C 0.02 1.08 5.49 85.16 0.47 1.54 16 16 N -0.85 -46.66 7.89 21.79 0.17 -46.49 16 17 Si 0.96 41.87 29.56 68.60 2.03 43.89 16 18 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 19 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 20 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 21 C -0.20 -11.00 6.25 -18.44 -0.12 -11.11 16 22 C 0.16 7.96 4.69 85.39 0.40 8.36 16 23 H 0.02 0.73 7.89 -2.39 -0.02 0.72 16 24 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 25 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 26 H 0.08 2.83 8.14 -2.38 -0.02 2.81 16 27 H 0.05 1.81 7.67 -2.39 -0.02 1.79 16 28 H 0.05 1.41 8.04 -2.38 -0.02 1.39 16 29 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.05 1.41 8.04 -2.39 -0.02 1.40 16 31 H 0.05 1.90 5.75 -2.39 -0.01 1.88 16 32 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 34 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.05 1.91 5.75 -2.39 -0.01 1.89 16 37 H 0.27 13.71 8.30 -92.71 -0.77 12.94 16 38 H 0.01 0.32 7.72 -2.38 -0.02 0.30 16 39 H 0.08 4.63 6.12 -2.39 -0.01 4.62 16 Total: -1.00 -63.47 298.06 1.04 -62.43 By element: Atomic # 1 Polarization: 26.52 SS G_CDS: 0.32 Total: 26.84 kcal Atomic # 6 Polarization: -40.82 SS G_CDS: 4.85 Total: -35.97 kcal Atomic # 7 Polarization: -91.04 SS G_CDS: -6.15 Total: -97.19 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.89 kcal Total: -63.47 1.04 -62.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260040334.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.263 kcal (2) G-P(sol) polarization free energy of solvation -63.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds