Wall clock time and date at job start Mon Mar 30 2020 06:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46498 * 120.00357 * 2 1 4 4 C 1.50699 * 109.47002 * 270.00332 * 3 2 1 5 5 H 1.08000 * 120.00473 * 359.97438 * 4 3 2 6 6 C 1.37882 * 119.99933 * 179.97438 * 4 3 2 7 7 N 1.31512 * 120.00148 * 180.02562 * 6 4 3 8 8 Si 1.86797 * 120.00098 * 359.97438 * 6 4 3 9 9 H 1.48501 * 109.46850 * 89.99972 * 8 6 4 10 10 H 1.48495 * 109.47242 * 210.00383 * 8 6 4 11 11 H 1.48501 * 109.46856 * 330.00248 * 8 6 4 12 12 C 1.39175 * 119.99877 * 180.02562 * 2 1 3 13 13 C 1.39495 * 120.86505 * 179.97438 * 12 2 1 14 14 C 1.37875 * 119.06796 * 179.72446 * 13 12 2 15 15 N 1.32011 * 120.84289 * 359.97438 * 14 13 12 16 16 C 1.31984 * 121.90748 * 0.02562 * 15 14 13 17 17 C 1.50700 * 119.57505 * 180.02562 * 16 15 14 18 18 C 1.53002 * 109.46890 * 254.99874 * 17 16 15 19 19 C 1.52998 * 109.47238 * 14.99641 * 17 16 15 20 20 C 1.52998 * 109.47246 * 134.99929 * 17 16 15 21 21 C 1.37911 * 120.84803 * 359.97438 * 16 15 14 22 22 H 1.09003 * 109.46802 * 270.00208 * 1 2 3 23 23 H 1.09002 * 109.47131 * 29.99423 * 1 2 3 24 24 H 1.09000 * 109.47429 * 150.00089 * 1 2 3 25 25 H 1.08996 * 109.47130 * 29.99801 * 3 2 1 26 26 H 1.08999 * 109.47340 * 150.00219 * 3 2 1 27 27 H 0.96993 * 120.00712 * 179.97438 * 7 6 4 28 28 H 1.08006 * 120.46447 * 359.69898 * 13 12 2 29 29 H 1.07999 * 119.57581 * 180.02562 * 14 13 12 30 30 H 1.08997 * 109.47539 * 60.00263 * 18 17 16 31 31 H 1.09003 * 109.46694 * 179.97438 * 18 17 16 32 32 H 1.09005 * 109.47137 * 299.99732 * 18 17 16 33 33 H 1.08996 * 109.47144 * 60.00075 * 19 17 16 34 34 H 1.09003 * 109.47359 * 179.97438 * 19 17 16 35 35 H 1.09004 * 109.47478 * 300.00068 * 19 17 16 36 36 H 1.08999 * 109.47018 * 59.99651 * 20 17 16 37 37 H 1.09003 * 109.47321 * 180.02562 * 20 17 16 38 38 H 1.09005 * 109.47075 * 299.99677 * 20 17 16 39 39 H 1.07994 * 120.47305 * 180.02562 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0981 1.0958 -2.2417 6 6 3.1261 2.8779 -1.6728 7 7 3.3448 3.2579 -2.9127 8 14 3.7319 3.9298 -0.2530 9 1 5.1053 3.5090 0.1239 10 1 3.7468 5.3564 -0.6650 11 1 2.8253 3.7601 0.9108 12 6 2.1609 -1.2053 -0.0005 13 6 3.5557 -1.2264 -0.0011 14 6 4.2072 -2.4415 0.0042 15 7 3.5282 -3.5735 0.0102 16 6 2.2086 -3.5955 0.0109 17 6 1.4866 -4.9183 0.0185 18 6 0.9139 -5.1947 -1.3731 19 6 2.4656 -6.0314 0.3974 20 6 0.3475 -4.8718 1.0388 21 6 1.4818 -2.4234 0.0059 22 1 -0.3633 0.0000 1.0277 23 1 -0.3633 0.8900 -0.5137 24 1 -0.3634 -0.8900 -0.5138 25 1 1.6086 2.0283 0.5138 26 1 3.1500 1.1383 0.5138 27 1 3.8210 4.0840 -3.0900 28 1 4.1173 -0.3038 -0.0060 29 1 5.2869 -2.4674 0.0042 30 1 1.7255 -5.2278 -2.1000 31 1 0.3922 -6.1517 -1.3677 32 1 0.2165 -4.4016 -1.6431 33 1 2.8736 -5.8345 1.3887 34 1 1.9433 -6.9881 0.4033 35 1 3.2772 -6.0646 -0.3295 36 1 -0.3499 -4.0788 0.7688 37 1 -0.1744 -5.8287 1.0446 38 1 0.7555 -4.6749 2.0302 39 1 0.4022 -2.4484 0.0070 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260162903.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:28 Heat of formation + Delta-G solvation = 28.257539 kcal Electronic energy + Delta-G solvation = -18276.566774 eV Core-core repulsion = 15604.800766 eV Total energy + Delta-G solvation = -2671.766008 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.98547 -37.10785 -35.62996 -32.76568 -30.59980 -30.07691 -28.38759 -27.22398 -27.12177 -25.38640 -23.33485 -22.13003 -20.90733 -18.61231 -17.02525 -16.75707 -15.94085 -14.92818 -14.54999 -14.47551 -14.26835 -13.94919 -13.56768 -13.42815 -13.29111 -12.74698 -12.48214 -12.12663 -12.02576 -11.95339 -11.68358 -11.52775 -11.30185 -11.04844 -10.82118 -10.74689 -10.65825 -10.42213 -10.30104 -9.81208 -9.42532 -8.78331 -8.72533 -8.37656 -6.81991 -6.21105 -4.22182 1.80585 2.24364 3.17081 3.24694 3.25677 3.86198 4.26297 4.46492 4.59286 4.93426 5.09321 5.18112 5.29191 5.39938 5.54649 5.68029 5.69520 5.79392 5.86101 5.88199 5.90500 5.96685 5.98335 6.05381 6.11999 6.18852 6.22271 6.39482 6.43201 6.50126 6.55116 6.61215 6.76308 6.82206 7.30946 7.44534 7.87132 8.13524 8.41078 8.73832 8.85293 9.37894 10.91899 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.034621 B = 0.005577 C = 0.005321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.559229 B = 5019.418780 C = 5261.186824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.599 5.599 3 C 0.219 3.781 4 C -0.538 4.538 5 H 0.076 0.924 6 C 0.074 3.926 7 N -0.892 5.892 8 Si 0.873 3.127 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.266 1.266 12 C 0.269 3.731 13 C -0.242 4.242 14 C 0.128 3.872 15 N -0.537 5.537 16 C 0.169 3.831 17 C -0.017 4.017 18 C -0.135 4.135 19 C -0.123 4.123 20 C -0.137 4.137 21 C -0.263 4.263 22 H 0.040 0.960 23 H 0.072 0.928 24 H 0.059 0.941 25 H 0.031 0.969 26 H 0.029 0.971 27 H 0.266 0.734 28 H 0.136 0.864 29 H 0.145 0.855 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.053 0.947 34 H 0.045 0.955 35 H 0.064 0.936 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.055 0.945 39 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.766 -12.921 7.574 15.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.304 5.304 3 C 0.098 3.902 4 C -0.577 4.577 5 H 0.094 0.906 6 C -0.129 4.129 7 N -0.530 5.530 8 Si 0.699 3.301 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.190 1.190 12 C 0.154 3.846 13 C -0.267 4.267 14 C -0.026 4.026 15 N -0.251 5.251 16 C 0.031 3.969 17 C -0.018 4.018 18 C -0.193 4.193 19 C -0.180 4.180 20 C -0.195 4.195 21 C -0.289 4.289 22 H 0.058 0.942 23 H 0.091 0.909 24 H 0.077 0.923 25 H 0.049 0.951 26 H 0.047 0.953 27 H 0.076 0.924 28 H 0.154 0.846 29 H 0.162 0.838 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -4.338 -13.306 7.465 15.862 hybrid contribution -0.062 1.786 0.446 1.842 sum -4.400 -11.520 7.911 14.651 Atomic orbital electron populations 1.21555 0.80601 1.02614 1.00022 1.46673 1.04745 1.03915 1.75111 1.19725 0.91988 0.80428 0.98075 1.21425 1.37383 1.07450 0.91409 0.90572 1.24889 0.95283 0.97188 0.95519 1.69890 1.40978 1.23467 1.18689 0.86906 0.79970 0.80256 0.82946 1.19806 1.20852 1.19035 1.18080 0.91554 0.86177 0.88770 1.21747 0.93316 1.00251 1.11425 1.22278 0.99385 0.87235 0.93713 1.67418 1.08072 1.30161 1.19426 1.20558 0.89667 0.93256 0.93393 1.19403 0.94639 0.91710 0.96034 1.21841 1.00802 1.01204 0.95429 1.21627 0.98581 0.95677 1.02115 1.21902 0.97421 1.01580 0.98591 1.21237 1.00321 0.91492 1.15836 0.94156 0.90910 0.92258 0.95141 0.95343 0.92387 0.84642 0.83755 0.92421 0.92414 0.92516 0.92801 0.93611 0.91682 0.92362 0.92420 0.92616 0.85877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.59 10.21 59.85 0.61 2.20 16 2 N -0.60 -12.24 2.98 -180.80 -0.54 -12.78 16 3 C 0.22 5.03 4.01 -5.19 -0.02 5.01 16 4 C -0.54 -14.69 9.94 -34.44 -0.34 -15.04 16 5 H 0.08 2.34 8.06 -52.49 -0.42 1.92 16 6 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 7 N -0.89 -26.58 13.96 55.43 0.77 -25.81 16 8 Si 0.87 20.34 27.47 -169.99 -4.67 15.67 16 9 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.27 -5.88 6.54 56.52 0.37 -5.51 16 12 C 0.27 5.35 6.58 -83.60 -0.55 4.80 16 13 C -0.24 -4.80 9.26 -39.25 -0.36 -5.16 16 14 C 0.13 2.29 11.17 -17.61 -0.20 2.09 16 15 N -0.54 -9.54 9.02 -9.57 -0.09 -9.63 16 16 C 0.17 2.80 5.56 -82.65 -0.46 2.34 16 17 C -0.02 -0.22 0.87 -155.66 -0.14 -0.36 16 18 C -0.14 -1.63 8.40 37.16 0.31 -1.31 16 19 C -0.12 -1.51 7.81 37.16 0.29 -1.22 16 20 C -0.14 -1.53 8.08 37.16 0.30 -1.23 16 21 C -0.26 -4.56 8.23 -39.25 -0.32 -4.88 16 22 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.07 1.23 8.07 -51.93 -0.42 0.81 16 24 H 0.06 0.88 6.27 -51.93 -0.33 0.56 16 25 H 0.03 0.69 7.13 -51.93 -0.37 0.32 16 26 H 0.03 0.65 5.69 -51.93 -0.30 0.36 16 27 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 28 H 0.14 2.80 6.28 -52.48 -0.33 2.47 16 29 H 0.15 2.17 8.06 -52.49 -0.42 1.75 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 33 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.87 7.85 -51.93 -0.41 0.46 16 36 H 0.06 0.64 6.70 -51.93 -0.35 0.29 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.12 1.89 4.94 -52.49 -0.26 1.63 16 LS Contribution 312.21 15.07 4.70 4.70 Total: -1.00 -30.07 312.21 -6.94 -37.01 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -6.15 Total: 1.63 kcal Atomic # 6 Polarization: -9.82 SS G_CDS: -0.97 Total: -10.80 kcal Atomic # 7 Polarization: -48.37 SS G_CDS: 0.15 Total: -48.22 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -4.67 Total: 15.67 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.07 -6.94 -37.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260162903.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.268 kcal (2) G-P(sol) polarization free energy of solvation -30.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds