Wall clock time and date at job start Mon Mar 30 2020 06:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46498 * 120.00357 * 2 1 4 4 C 1.50699 * 109.47002 * 270.00332 * 3 2 1 5 5 H 1.08000 * 120.00473 * 359.97438 * 4 3 2 6 6 C 1.37882 * 119.99933 * 179.97438 * 4 3 2 7 7 N 1.31512 * 120.00148 * 180.02562 * 6 4 3 8 8 Si 1.86797 * 120.00098 * 359.97438 * 6 4 3 9 9 H 1.48501 * 109.46850 * 89.99972 * 8 6 4 10 10 H 1.48495 * 109.47242 * 210.00383 * 8 6 4 11 11 H 1.48501 * 109.46856 * 330.00248 * 8 6 4 12 12 C 1.39175 * 119.99877 * 180.02562 * 2 1 3 13 13 C 1.39495 * 120.86505 * 179.97438 * 12 2 1 14 14 C 1.37875 * 119.06796 * 179.72446 * 13 12 2 15 15 N 1.32011 * 120.84289 * 359.97438 * 14 13 12 16 16 C 1.31984 * 121.90748 * 0.02562 * 15 14 13 17 17 C 1.50700 * 119.57505 * 180.02562 * 16 15 14 18 18 C 1.53002 * 109.46890 * 254.99874 * 17 16 15 19 19 C 1.52998 * 109.47238 * 14.99641 * 17 16 15 20 20 C 1.52998 * 109.47246 * 134.99929 * 17 16 15 21 21 C 1.37911 * 120.84803 * 359.97438 * 16 15 14 22 22 H 1.09003 * 109.46802 * 270.00208 * 1 2 3 23 23 H 1.09002 * 109.47131 * 29.99423 * 1 2 3 24 24 H 1.09000 * 109.47429 * 150.00089 * 1 2 3 25 25 H 1.08996 * 109.47130 * 29.99801 * 3 2 1 26 26 H 1.08999 * 109.47340 * 150.00219 * 3 2 1 27 27 H 0.96993 * 120.00712 * 179.97438 * 7 6 4 28 28 H 1.08006 * 120.46447 * 359.69898 * 13 12 2 29 29 H 1.07999 * 119.57581 * 180.02562 * 14 13 12 30 30 H 1.08997 * 109.47539 * 60.00263 * 18 17 16 31 31 H 1.09003 * 109.46694 * 179.97438 * 18 17 16 32 32 H 1.09005 * 109.47137 * 299.99732 * 18 17 16 33 33 H 1.08996 * 109.47144 * 60.00075 * 19 17 16 34 34 H 1.09003 * 109.47359 * 179.97438 * 19 17 16 35 35 H 1.09004 * 109.47478 * 300.00068 * 19 17 16 36 36 H 1.08999 * 109.47018 * 59.99651 * 20 17 16 37 37 H 1.09003 * 109.47321 * 180.02562 * 20 17 16 38 38 H 1.09005 * 109.47075 * 299.99677 * 20 17 16 39 39 H 1.07994 * 120.47305 * 180.02562 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0981 1.0958 -2.2417 6 6 3.1261 2.8779 -1.6728 7 7 3.3448 3.2579 -2.9127 8 14 3.7319 3.9298 -0.2530 9 1 5.1053 3.5090 0.1239 10 1 3.7468 5.3564 -0.6650 11 1 2.8253 3.7601 0.9108 12 6 2.1609 -1.2053 -0.0005 13 6 3.5557 -1.2264 -0.0011 14 6 4.2072 -2.4415 0.0042 15 7 3.5282 -3.5735 0.0102 16 6 2.2086 -3.5955 0.0109 17 6 1.4866 -4.9183 0.0185 18 6 0.9139 -5.1947 -1.3731 19 6 2.4656 -6.0314 0.3974 20 6 0.3475 -4.8718 1.0388 21 6 1.4818 -2.4234 0.0059 22 1 -0.3633 0.0000 1.0277 23 1 -0.3633 0.8900 -0.5137 24 1 -0.3634 -0.8900 -0.5138 25 1 1.6086 2.0283 0.5138 26 1 3.1500 1.1383 0.5138 27 1 3.8210 4.0840 -3.0900 28 1 4.1173 -0.3038 -0.0060 29 1 5.2869 -2.4674 0.0042 30 1 1.7255 -5.2278 -2.1000 31 1 0.3922 -6.1517 -1.3677 32 1 0.2165 -4.4016 -1.6431 33 1 2.8736 -5.8345 1.3887 34 1 1.9433 -6.9881 0.4033 35 1 3.2772 -6.0646 -0.3295 36 1 -0.3499 -4.0788 0.7688 37 1 -0.1744 -5.8287 1.0446 38 1 0.7555 -4.6749 2.0302 39 1 0.4022 -2.4484 0.0070 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260162903.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:28 Heat of formation + Delta-G solvation = 10.848542 kcal Electronic energy + Delta-G solvation = -18277.321685 eV Core-core repulsion = 15604.800766 eV Total energy + Delta-G solvation = -2672.520919 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.34795 -38.47182 -36.91335 -34.82307 -32.16164 -31.46870 -30.08251 -28.20724 -28.06699 -26.89681 -24.90594 -23.67877 -22.34353 -19.89344 -19.12452 -18.16115 -17.42493 -16.42397 -16.19100 -15.76219 -15.61068 -15.28299 -14.93431 -14.76290 -14.53817 -14.41750 -13.96240 -13.67755 -13.21140 -13.06176 -12.97915 -12.81053 -12.58011 -12.47173 -12.23558 -12.15760 -11.81730 -11.79396 -11.75651 -11.54368 -11.18238 -10.84667 -10.17990 -9.75247 -8.39469 -8.33086 -6.42689 0.40636 0.78293 1.34361 1.34783 1.45178 2.28644 2.35804 2.98004 3.07941 3.42643 3.81892 4.07582 4.18663 4.23828 4.31296 4.37290 4.47689 4.56182 4.67626 4.71318 4.81671 4.84476 4.87509 4.89712 4.95527 4.98260 5.06627 5.10466 5.19938 5.26277 5.29694 5.33924 5.41058 5.49541 5.60938 5.91547 6.05021 6.47804 6.62320 6.64677 7.22677 7.34344 8.81298 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.034621 B = 0.005577 C = 0.005321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.559229 B = 5019.418780 C = 5261.186824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.613 5.613 3 C 0.229 3.771 4 C -0.540 4.540 5 H 0.024 0.976 6 C 0.015 3.985 7 N -0.945 5.945 8 Si 0.947 3.053 9 H -0.265 1.265 10 H -0.281 1.281 11 H -0.242 1.242 12 C 0.247 3.753 13 C -0.269 4.269 14 C 0.129 3.871 15 N -0.544 5.544 16 C 0.166 3.834 17 C -0.020 4.020 18 C -0.133 4.133 19 C -0.118 4.118 20 C -0.134 4.134 21 C -0.261 4.261 22 H 0.068 0.932 23 H 0.062 0.938 24 H 0.074 0.926 25 H 0.042 0.958 26 H 0.033 0.967 27 H 0.269 0.731 28 H 0.118 0.882 29 H 0.168 0.832 30 H 0.041 0.959 31 H 0.086 0.914 32 H 0.053 0.947 33 H 0.045 0.955 34 H 0.072 0.928 35 H 0.049 0.951 36 H 0.060 0.940 37 H 0.083 0.917 38 H 0.049 0.951 39 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.732 -14.240 9.607 18.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.319 5.319 3 C 0.106 3.894 4 C -0.578 4.578 5 H 0.042 0.958 6 C -0.184 4.184 7 N -0.585 5.585 8 Si 0.769 3.231 9 H -0.190 1.190 10 H -0.206 1.206 11 H -0.165 1.165 12 C 0.133 3.867 13 C -0.294 4.294 14 C -0.026 4.026 15 N -0.258 5.258 16 C 0.029 3.971 17 C -0.020 4.020 18 C -0.190 4.190 19 C -0.176 4.176 20 C -0.191 4.191 21 C -0.286 4.286 22 H 0.086 0.914 23 H 0.081 0.919 24 H 0.093 0.907 25 H 0.060 0.940 26 H 0.050 0.950 27 H 0.078 0.922 28 H 0.136 0.864 29 H 0.185 0.815 30 H 0.060 0.940 31 H 0.104 0.896 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.091 0.909 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.101 0.899 38 H 0.068 0.932 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -5.330 -14.665 9.511 18.274 hybrid contribution 0.217 2.053 -0.279 2.083 sum -5.113 -12.612 9.232 16.445 Atomic orbital electron populations 1.21736 0.78533 1.02893 1.01844 1.46683 1.06079 1.03175 1.76003 1.19440 0.92806 0.82070 0.95055 1.21598 1.36912 1.06877 0.92444 0.95764 1.25856 0.95332 0.98700 0.98479 1.70056 1.42508 1.24400 1.21493 0.85731 0.79935 0.77795 0.79643 1.18953 1.20610 1.16501 1.18397 0.91858 0.86878 0.89538 1.21783 0.93768 1.00358 1.13513 1.22636 1.00606 0.86688 0.92651 1.67549 1.08880 1.29824 1.19542 1.21262 0.89481 0.94874 0.91530 1.19580 0.95217 0.89834 0.97414 1.21838 1.00349 1.02683 0.94172 1.21592 0.98219 0.96723 1.01051 1.21888 0.96646 1.03188 0.97411 1.21464 1.01411 0.90672 1.15065 0.91369 0.91942 0.90747 0.93998 0.94958 0.92222 0.86354 0.81508 0.93986 0.89566 0.92792 0.93609 0.90900 0.93206 0.92107 0.89858 0.93153 0.83787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.94 10.21 127.77 1.31 4.25 16 2 N -0.61 -24.90 2.98 -725.92 -2.16 -27.06 16 3 C 0.23 10.49 4.01 85.63 0.34 10.83 16 4 C -0.54 -30.41 9.94 25.60 0.25 -30.16 16 5 H 0.02 1.57 8.06 -2.91 -0.02 1.55 16 6 C 0.01 0.84 5.47 84.66 0.46 1.30 16 7 N -0.94 -58.17 13.96 21.45 0.30 -57.87 16 8 Si 0.95 41.94 27.47 68.60 1.88 43.82 16 9 H -0.26 -11.33 7.11 99.48 0.71 -10.63 16 10 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 11 H -0.24 -9.70 6.54 99.48 0.65 -9.05 16 12 C 0.25 9.79 6.58 38.57 0.25 10.04 16 13 C -0.27 -10.82 9.26 22.49 0.21 -10.61 16 14 C 0.13 4.58 11.17 84.58 0.94 5.52 16 15 N -0.54 -18.91 9.02 -184.20 -1.66 -20.57 16 16 C 0.17 5.27 5.56 42.46 0.24 5.51 16 17 C -0.02 -0.46 0.87 -52.93 -0.05 -0.51 16 18 C -0.13 -2.86 8.40 71.98 0.60 -2.26 16 19 C -0.12 -2.63 7.81 71.98 0.56 -2.07 16 20 C -0.13 -2.53 8.08 71.98 0.58 -1.95 16 21 C -0.26 -8.72 8.23 22.49 0.19 -8.54 16 22 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 23 H 0.06 2.09 8.07 -2.39 -0.02 2.07 16 24 H 0.07 2.10 6.27 -2.39 -0.01 2.08 16 25 H 0.04 1.83 7.13 -2.39 -0.02 1.81 16 26 H 0.03 1.47 5.69 -2.39 -0.01 1.45 16 27 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 28 H 0.12 5.07 6.28 -2.91 -0.02 5.06 16 29 H 0.17 4.95 8.06 -2.91 -0.02 4.92 16 30 H 0.04 1.02 8.14 -2.39 -0.02 1.01 16 31 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.05 1.18 8.09 -2.38 -0.02 1.17 16 33 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.05 1.25 7.85 -2.38 -0.02 1.23 16 36 H 0.06 1.12 6.70 -2.39 -0.02 1.10 16 37 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 39 H 0.14 4.10 4.94 -2.91 -0.01 4.09 16 Total: -1.00 -67.09 312.21 5.22 -61.88 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: 0.96 Total: 18.44 kcal Atomic # 6 Polarization: -24.53 SS G_CDS: 5.90 Total: -18.63 kcal Atomic # 7 Polarization: -101.98 SS G_CDS: -3.52 Total: -105.50 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 1.88 Total: 43.82 kcal Total: -67.09 5.22 -61.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260162903.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.724 kcal (2) G-P(sol) polarization free energy of solvation -67.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds