Wall clock time and date at job start Mon Mar 30 2020 05:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50694 * 109.46839 * 2 1 4 4 N 1.31073 * 125.96345 * 84.24008 * 3 2 1 5 5 N 1.40294 * 108.27231 * 180.02562 * 4 3 2 6 6 H 0.96998 * 126.09393 * 179.97438 * 5 4 3 7 7 C 1.34328 * 107.81903 * 359.93516 * 5 4 3 8 8 C 1.35754 * 107.84080 * 0.10325 * 7 5 4 9 9 C 1.50832 * 124.10771 * 179.86009 * 8 7 5 10 10 H 1.09004 * 109.71678 * 103.15496 * 9 8 7 11 11 C 1.50706 * 109.68214 * 223.68804 * 9 8 7 12 12 H 1.07998 * 120.00052 * 53.54734 * 11 9 8 13 13 C 1.37876 * 119.99979 * 233.54241 * 11 9 8 14 14 N 1.31507 * 120.00292 * 5.33623 * 13 11 9 15 15 Si 1.86807 * 119.99659 * 185.61091 * 13 11 9 16 16 H 1.48502 * 109.46673 * 179.72444 * 15 13 11 17 17 H 1.48499 * 109.47118 * 299.72322 * 15 13 11 18 18 H 1.48496 * 109.47278 * 59.72760 * 15 13 11 19 19 C 1.53358 * 108.38418 * 343.41427 * 9 8 7 20 20 C 1.52999 * 109.46864 * 169.96807 * 19 9 8 21 21 C 1.53007 * 109.46473 * 289.94850 * 19 9 8 22 22 C 1.53109 * 109.51216 * 49.95128 * 19 9 8 23 23 C 1.50820 * 128.03942 * 180.09969 * 7 5 4 24 24 H 1.08998 * 109.47046 * 63.39965 * 1 2 3 25 25 H 1.09002 * 109.46970 * 183.39221 * 1 2 3 26 26 H 1.08994 * 109.47520 * 303.39689 * 1 2 3 27 27 H 1.08998 * 109.47249 * 240.00223 * 2 1 3 28 28 H 1.08999 * 109.47160 * 119.99778 * 2 1 3 29 29 H 0.97003 * 120.00394 * 174.98482 * 14 13 11 30 30 H 1.09002 * 109.47545 * 59.99484 * 20 19 9 31 31 H 1.08998 * 109.47049 * 180.02562 * 20 19 9 32 32 H 1.09004 * 109.46456 * 299.99938 * 20 19 9 33 33 H 1.09001 * 109.47014 * 59.99290 * 21 19 9 34 34 H 1.08992 * 109.47333 * 179.97438 * 21 19 9 35 35 H 1.09006 * 109.47026 * 300.00036 * 21 19 9 36 36 H 1.08991 * 109.46524 * 49.74683 * 22 19 9 37 37 H 1.08994 * 109.46300 * 169.72937 * 22 19 9 38 38 H 1.09003 * 109.67893 * 43.69944 * 23 7 5 39 39 H 1.08998 * 109.68384 * 283.14970 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.1884 2.1820 1.0555 5 7 2.6737 3.4281 0.6313 6 1 2.8798 4.1853 1.2014 7 6 2.8028 3.3857 -0.7051 8 6 2.4110 2.1545 -1.1219 9 6 2.4062 1.7115 -2.5637 10 1 3.2615 1.0625 -2.7518 11 6 1.1297 0.9680 -2.8620 12 1 0.1755 1.4233 -2.6415 13 6 1.1801 -0.2933 -3.4164 14 7 2.3391 -0.8905 -3.5879 15 14 -0.3977 -1.1510 -3.9310 16 1 -0.0735 -2.4834 -4.5009 17 1 -1.2781 -1.3198 -2.7471 18 1 -1.0956 -0.3316 -4.9540 19 6 2.4981 2.9576 -3.4528 20 6 2.7463 2.5331 -4.9016 21 6 1.1868 3.7416 -3.3689 22 6 3.6528 3.8425 -2.9755 23 6 3.2889 4.4759 -1.6269 24 1 -0.3633 0.4601 -0.9189 25 1 -0.3633 -1.0259 0.0608 26 1 -0.3634 0.5656 0.8579 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 2.3707 -1.8050 -3.9098 30 1 1.9240 1.9037 -5.2419 31 1 2.8121 3.4188 -5.5336 32 1 3.6803 1.9744 -4.9615 33 1 1.0096 4.0438 -2.3367 34 1 1.2521 4.6276 -4.0005 35 1 0.3646 3.1121 -3.7094 36 1 4.5516 3.2366 -2.8615 37 1 3.8351 4.6284 -3.7083 38 1 4.1687 4.9549 -1.1971 39 1 2.5006 5.2150 -1.7691 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260219743.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:40 Heat of formation + Delta-G solvation = 45.958862 kcal Electronic energy + Delta-G solvation = -19661.055701 eV Core-core repulsion = 16990.057280 eV Total energy + Delta-G solvation = -2670.998421 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.75559 -37.25232 -34.03498 -32.17455 -30.94419 -29.65595 -28.61545 -26.29979 -25.73897 -23.98514 -23.10159 -21.88399 -19.62173 -18.44087 -17.16969 -16.44730 -15.86349 -14.69909 -14.38629 -13.79704 -13.72142 -13.15142 -13.07678 -12.80061 -12.42928 -12.15080 -11.96948 -11.71898 -11.25025 -11.02322 -10.93524 -10.78923 -10.73863 -10.66463 -10.49444 -10.30832 -9.99272 -9.75120 -9.69792 -9.31339 -9.02153 -8.73703 -8.38035 -8.31227 -7.16184 -5.92487 -3.93184 2.72014 3.33925 3.39804 3.43172 3.64914 3.85213 4.48615 5.27118 5.35136 5.50789 5.57816 5.69333 5.98948 6.04442 6.12551 6.15317 6.28263 6.37399 6.40373 6.42665 6.52544 6.58498 6.62513 6.71882 6.83849 6.89026 6.96948 6.97695 7.22913 7.26884 7.34101 7.39473 7.45714 7.69457 7.82031 7.90452 7.99855 8.15799 8.51493 8.69846 9.14392 9.65618 11.13003 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.019337 B = 0.012430 C = 0.008655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.646054 B = 2252.145854 C = 3234.498311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.035 4.035 3 C 0.105 3.895 4 N -0.327 5.327 5 N -0.492 5.492 6 H 0.423 0.577 7 C 0.038 3.962 8 C -0.169 4.169 9 C 0.107 3.893 10 H 0.076 0.924 11 C -0.483 4.483 12 H 0.054 0.946 13 C 0.073 3.927 14 N -0.892 5.892 15 Si 0.871 3.129 16 H -0.290 1.290 17 H -0.274 1.274 18 H -0.278 1.278 19 C -0.055 4.055 20 C -0.118 4.118 21 C -0.127 4.127 22 C -0.105 4.105 23 C -0.045 4.045 24 H 0.075 0.925 25 H 0.044 0.956 26 H 0.036 0.964 27 H 0.109 0.891 28 H 0.048 0.952 29 H 0.261 0.739 30 H 0.064 0.936 31 H 0.024 0.976 32 H 0.044 0.956 33 H 0.042 0.958 34 H 0.024 0.976 35 H 0.064 0.936 36 H 0.059 0.941 37 H 0.054 0.946 38 H 0.060 0.940 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.063 7.174 2.100 7.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.074 4.074 3 C -0.060 4.060 4 N -0.151 5.151 5 N -0.200 5.200 6 H 0.264 0.736 7 C -0.089 4.089 8 C -0.180 4.180 9 C 0.088 3.912 10 H 0.094 0.906 11 C -0.521 4.521 12 H 0.072 0.928 13 C -0.128 4.128 14 N -0.531 5.531 15 Si 0.699 3.301 16 H -0.216 1.216 17 H -0.199 1.199 18 H -0.204 1.204 19 C -0.056 4.056 20 C -0.175 4.175 21 C -0.184 4.184 22 C -0.143 4.143 23 C -0.084 4.084 24 H 0.094 0.906 25 H 0.063 0.937 26 H 0.055 0.945 27 H 0.127 0.873 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.043 0.957 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.043 0.957 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.037 7.070 3.201 7.830 hybrid contribution -0.694 -0.035 -0.668 0.964 sum 0.343 7.036 2.534 7.486 Atomic orbital electron populations 1.21701 0.95358 1.00326 1.02158 1.19898 0.95610 0.89090 1.02815 1.22000 0.97169 0.96675 0.90169 1.77240 1.23712 0.91088 1.23036 1.45748 1.55851 1.13076 1.05281 0.73582 1.20897 1.04901 0.98578 0.84511 1.20793 1.06123 0.91956 0.99087 1.17626 0.99280 0.91146 0.83162 0.90626 1.20831 0.91933 1.00367 1.38945 0.92793 1.24834 0.95112 0.97481 0.95417 1.69848 1.23455 1.12633 1.47121 0.87003 0.84838 0.78957 0.79326 1.21555 1.19936 1.20413 1.20723 0.92349 0.96266 0.96226 1.21590 1.02023 0.98806 0.95103 1.21808 0.98958 0.97934 0.99673 1.21676 0.99766 0.98711 0.94129 1.20198 0.99473 0.94484 0.94231 0.90631 0.93712 0.94512 0.87263 0.93328 0.92928 0.91737 0.95683 0.93657 0.93885 0.95681 0.91726 0.92206 0.92745 0.92174 0.90937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 9.78 37.16 0.36 -2.38 16 2 C -0.03 -0.74 5.63 -27.88 -0.16 -0.90 16 3 C 0.10 2.33 6.36 -82.52 -0.52 1.80 16 4 N -0.33 -6.91 12.71 33.59 0.43 -6.48 16 5 N -0.49 -8.92 7.34 33.48 0.25 -8.67 16 6 H 0.42 5.99 8.96 -182.45 -1.64 4.35 16 7 C 0.04 0.71 6.31 -82.33 -0.52 0.20 16 8 C -0.17 -3.70 4.96 -105.05 -0.52 -4.22 16 9 C 0.11 2.44 1.89 -92.67 -0.17 2.27 16 10 H 0.08 1.98 6.92 -51.93 -0.36 1.62 16 11 C -0.48 -11.62 3.40 -34.44 -0.12 -11.74 16 12 H 0.05 1.35 6.11 -52.49 -0.32 1.03 16 13 C 0.07 1.81 4.64 -17.82 -0.08 1.73 16 14 N -0.89 -23.40 12.62 55.43 0.70 -22.70 16 15 Si 0.87 19.94 29.55 -169.99 -5.02 14.92 16 16 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 17 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 19 C -0.06 -1.08 0.55 -154.26 -0.09 -1.16 16 20 C -0.12 -2.31 8.31 37.16 0.31 -2.00 16 21 C -0.13 -2.38 7.23 37.16 0.27 -2.11 16 22 C -0.10 -1.76 4.85 -26.49 -0.13 -1.89 16 23 C -0.04 -0.70 5.66 -27.64 -0.16 -0.85 16 24 H 0.07 1.64 6.02 -51.93 -0.31 1.33 16 25 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.11 2.58 6.45 -51.93 -0.33 2.25 16 28 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.26 6.70 8.32 -40.82 -0.34 6.36 16 30 H 0.06 1.40 7.59 -51.93 -0.39 1.00 16 31 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.04 0.82 5.61 -51.93 -0.29 0.53 16 34 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 1.32 6.54 -51.93 -0.34 0.98 16 36 H 0.06 1.05 8.11 -51.93 -0.42 0.63 16 37 H 0.05 0.80 8.11 -51.93 -0.42 0.38 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.07 1.06 6.98 -51.93 -0.36 0.70 16 LS Contribution 295.83 15.07 4.46 4.46 Total: -1.00 -26.72 295.83 -8.01 -34.72 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -7.29 Total: 5.02 kcal Atomic # 6 Polarization: -19.74 SS G_CDS: -1.53 Total: -21.27 kcal Atomic # 7 Polarization: -39.22 SS G_CDS: 1.37 Total: -37.85 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.92 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -26.72 -8.01 -34.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260219743.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.680 kcal (2) G-P(sol) polarization free energy of solvation -26.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds