Wall clock time and date at job start Mon Mar 30 2020 05:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50694 * 109.46839 * 2 1 4 4 N 1.31073 * 125.96345 * 84.24008 * 3 2 1 5 5 N 1.40294 * 108.27231 * 180.02562 * 4 3 2 6 6 H 0.96998 * 126.09393 * 179.97438 * 5 4 3 7 7 C 1.34328 * 107.81903 * 359.93516 * 5 4 3 8 8 C 1.35754 * 107.84080 * 0.10325 * 7 5 4 9 9 C 1.50832 * 124.10771 * 179.86009 * 8 7 5 10 10 H 1.09004 * 109.71678 * 103.15496 * 9 8 7 11 11 C 1.50706 * 109.68214 * 223.68804 * 9 8 7 12 12 H 1.07998 * 120.00052 * 53.54734 * 11 9 8 13 13 C 1.37876 * 119.99979 * 233.54241 * 11 9 8 14 14 N 1.31507 * 120.00292 * 5.33623 * 13 11 9 15 15 Si 1.86807 * 119.99659 * 185.61091 * 13 11 9 16 16 H 1.48502 * 109.46673 * 179.72444 * 15 13 11 17 17 H 1.48499 * 109.47118 * 299.72322 * 15 13 11 18 18 H 1.48496 * 109.47278 * 59.72760 * 15 13 11 19 19 C 1.53358 * 108.38418 * 343.41427 * 9 8 7 20 20 C 1.52999 * 109.46864 * 169.96807 * 19 9 8 21 21 C 1.53007 * 109.46473 * 289.94850 * 19 9 8 22 22 C 1.53109 * 109.51216 * 49.95128 * 19 9 8 23 23 C 1.50820 * 128.03942 * 180.09969 * 7 5 4 24 24 H 1.08998 * 109.47046 * 63.39965 * 1 2 3 25 25 H 1.09002 * 109.46970 * 183.39221 * 1 2 3 26 26 H 1.08994 * 109.47520 * 303.39689 * 1 2 3 27 27 H 1.08998 * 109.47249 * 240.00223 * 2 1 3 28 28 H 1.08999 * 109.47160 * 119.99778 * 2 1 3 29 29 H 0.97003 * 120.00394 * 174.98482 * 14 13 11 30 30 H 1.09002 * 109.47545 * 59.99484 * 20 19 9 31 31 H 1.08998 * 109.47049 * 180.02562 * 20 19 9 32 32 H 1.09004 * 109.46456 * 299.99938 * 20 19 9 33 33 H 1.09001 * 109.47014 * 59.99290 * 21 19 9 34 34 H 1.08992 * 109.47333 * 179.97438 * 21 19 9 35 35 H 1.09006 * 109.47026 * 300.00036 * 21 19 9 36 36 H 1.08991 * 109.46524 * 49.74683 * 22 19 9 37 37 H 1.08994 * 109.46300 * 169.72937 * 22 19 9 38 38 H 1.09003 * 109.67893 * 43.69944 * 23 7 5 39 39 H 1.08998 * 109.68384 * 283.14970 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.1884 2.1820 1.0555 5 7 2.6737 3.4281 0.6313 6 1 2.8798 4.1853 1.2014 7 6 2.8028 3.3857 -0.7051 8 6 2.4110 2.1545 -1.1219 9 6 2.4062 1.7115 -2.5637 10 1 3.2615 1.0625 -2.7518 11 6 1.1297 0.9680 -2.8620 12 1 0.1755 1.4233 -2.6415 13 6 1.1801 -0.2933 -3.4164 14 7 2.3391 -0.8905 -3.5879 15 14 -0.3977 -1.1510 -3.9310 16 1 -0.0735 -2.4834 -4.5009 17 1 -1.2781 -1.3198 -2.7471 18 1 -1.0956 -0.3316 -4.9540 19 6 2.4981 2.9576 -3.4528 20 6 2.7463 2.5331 -4.9016 21 6 1.1868 3.7416 -3.3689 22 6 3.6528 3.8425 -2.9755 23 6 3.2889 4.4759 -1.6269 24 1 -0.3633 0.4601 -0.9189 25 1 -0.3633 -1.0259 0.0608 26 1 -0.3634 0.5656 0.8579 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 2.3707 -1.8050 -3.9098 30 1 1.9240 1.9037 -5.2419 31 1 2.8121 3.4188 -5.5336 32 1 3.6803 1.9744 -4.9615 33 1 1.0096 4.0438 -2.3367 34 1 1.2521 4.6276 -4.0005 35 1 0.3646 3.1121 -3.7094 36 1 4.5516 3.2366 -2.8615 37 1 3.8351 4.6284 -3.7083 38 1 4.1687 4.9549 -1.1971 39 1 2.5006 5.2150 -1.7691 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260219743.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:40 Heat of formation + Delta-G solvation = 31.382334 kcal Electronic energy + Delta-G solvation = -19661.687787 eV Core-core repulsion = 16990.057280 eV Total energy + Delta-G solvation = -2671.630507 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.31995 -38.80134 -35.69600 -33.99052 -32.44775 -31.29055 -30.22362 -27.82959 -27.45578 -25.62080 -24.74003 -23.46153 -21.17101 -20.07426 -18.83468 -17.99392 -17.64967 -16.37645 -16.00256 -15.38194 -15.31475 -14.71490 -14.67712 -14.38861 -14.15578 -13.70892 -13.53489 -13.29877 -12.90557 -12.68718 -12.55682 -12.48877 -12.36449 -12.25841 -12.10071 -11.94434 -11.66579 -11.36410 -11.26987 -10.97311 -10.79724 -10.42068 -10.22762 -9.88595 -8.80579 -7.85399 -5.88412 1.16579 1.46793 1.50632 1.53728 2.18219 2.22895 2.58618 3.40723 3.89695 4.06482 4.21539 4.26688 4.42264 4.55146 4.69625 4.72517 4.74943 4.79424 4.86549 4.97951 5.01743 5.11739 5.17000 5.24243 5.29117 5.32787 5.40070 5.43024 5.55023 5.61240 5.64948 5.79361 5.87173 5.92849 6.06337 6.12914 6.21652 6.65799 6.77871 7.06796 7.24077 7.71170 9.18987 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.019337 B = 0.012430 C = 0.008655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.646054 B = 2252.145854 C = 3234.498311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.033 4.033 3 C 0.084 3.916 4 N -0.343 5.343 5 N -0.473 5.473 6 H 0.443 0.557 7 C 0.059 3.941 8 C -0.212 4.212 9 C 0.112 3.888 10 H 0.031 0.969 11 C -0.464 4.464 12 H 0.043 0.957 13 C 0.039 3.961 14 N -0.921 5.921 15 Si 0.907 3.093 16 H -0.295 1.295 17 H -0.268 1.268 18 H -0.279 1.279 19 C -0.059 4.059 20 C -0.111 4.111 21 C -0.117 4.117 22 C -0.101 4.101 23 C -0.042 4.042 24 H 0.054 0.946 25 H 0.057 0.943 26 H 0.047 0.953 27 H 0.079 0.921 28 H 0.059 0.941 29 H 0.255 0.745 30 H 0.033 0.967 31 H 0.057 0.943 32 H 0.029 0.971 33 H 0.040 0.960 34 H 0.055 0.945 35 H 0.038 0.962 36 H 0.047 0.953 37 H 0.087 0.913 38 H 0.096 0.904 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.168 10.011 2.635 10.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.072 4.072 3 C -0.080 4.080 4 N -0.168 5.168 5 N -0.183 5.183 6 H 0.289 0.711 7 C -0.069 4.069 8 C -0.223 4.223 9 C 0.092 3.908 10 H 0.050 0.950 11 C -0.503 4.503 12 H 0.061 0.939 13 C -0.159 4.159 14 N -0.562 5.562 15 Si 0.735 3.265 16 H -0.221 1.221 17 H -0.193 1.193 18 H -0.205 1.205 19 C -0.059 4.059 20 C -0.168 4.168 21 C -0.174 4.174 22 C -0.139 4.139 23 C -0.080 4.080 24 H 0.073 0.927 25 H 0.076 0.924 26 H 0.066 0.934 27 H 0.098 0.902 28 H 0.078 0.922 29 H 0.064 0.936 30 H 0.052 0.948 31 H 0.076 0.924 32 H 0.048 0.952 33 H 0.059 0.941 34 H 0.074 0.926 35 H 0.057 0.943 36 H 0.065 0.935 37 H 0.105 0.895 38 H 0.115 0.885 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.127 9.925 3.763 10.674 hybrid contribution -0.695 -0.839 -0.790 1.346 sum 0.432 9.085 2.973 9.569 Atomic orbital electron populations 1.21594 0.94452 1.01127 1.01412 1.19791 0.96377 0.89191 1.01840 1.22116 0.97990 0.97075 0.90803 1.77166 1.24631 0.92182 1.22830 1.45747 1.54245 1.12861 1.05442 0.71143 1.21345 1.02207 0.98367 0.85018 1.20788 1.09171 0.93813 0.98534 1.17425 0.96523 0.91938 0.84927 0.95041 1.20884 0.92156 1.00063 1.37158 0.93931 1.25206 0.96455 0.98171 0.96088 1.69967 1.24725 1.12526 1.49011 0.86413 0.83042 0.77967 0.79092 1.22150 1.19293 1.20461 1.20677 0.94404 0.95619 0.95241 1.21509 0.99922 0.99402 0.96011 1.21687 0.97295 0.98396 1.00033 1.21620 0.97651 0.98871 0.95751 1.20372 1.01607 0.93506 0.92544 0.92743 0.92366 0.93435 0.90234 0.92198 0.93576 0.94758 0.92450 0.95186 0.94066 0.92614 0.94273 0.93455 0.89457 0.88532 0.88670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.12 9.78 71.98 0.70 -4.41 16 2 C -0.03 -1.41 5.63 29.85 0.17 -1.25 16 3 C 0.08 3.72 6.36 42.93 0.27 3.99 16 4 N -0.34 -14.03 12.71 -47.63 -0.61 -14.64 16 5 N -0.47 -15.78 7.34 -47.99 -0.35 -16.13 16 6 H 0.44 10.83 8.96 -213.20 -1.91 8.92 16 7 C 0.06 2.10 6.31 41.64 0.26 2.36 16 8 C -0.21 -9.22 4.96 -20.14 -0.10 -9.32 16 9 C 0.11 5.16 1.89 -12.12 -0.02 5.14 16 10 H 0.03 1.72 6.92 -2.39 -0.02 1.71 16 11 C -0.46 -23.00 3.40 25.60 0.09 -22.92 16 12 H 0.04 2.18 6.11 -2.91 -0.02 2.17 16 13 C 0.04 1.99 4.64 84.66 0.39 2.38 16 14 N -0.92 -50.70 12.62 21.45 0.27 -50.43 16 15 Si 0.91 41.88 29.55 68.60 2.03 43.91 16 16 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 17 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 18 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 19 C -0.06 -2.22 0.55 -52.02 -0.03 -2.25 16 20 C -0.11 -4.29 8.31 71.98 0.60 -3.69 16 21 C -0.12 -4.13 7.23 71.98 0.52 -3.61 16 22 C -0.10 -3.04 4.85 30.75 0.15 -2.90 16 23 C -0.04 -1.10 5.66 30.01 0.17 -0.93 16 24 H 0.05 2.39 6.02 -2.39 -0.01 2.38 16 25 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 26 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.08 3.93 6.45 -2.39 -0.02 3.92 16 28 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 29 H 0.25 13.76 8.32 -92.71 -0.77 12.99 16 30 H 0.03 1.49 7.59 -2.39 -0.02 1.47 16 31 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.04 1.45 5.61 -2.39 -0.01 1.43 16 34 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.04 1.56 6.54 -2.38 -0.02 1.54 16 36 H 0.05 1.55 8.11 -2.39 -0.02 1.53 16 37 H 0.09 2.11 8.11 -2.39 -0.02 2.10 16 38 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.10 2.21 6.98 -2.39 -0.02 2.19 16 Total: -1.00 -59.76 295.83 3.65 -56.11 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: -0.86 Total: 18.58 kcal Atomic # 6 Polarization: -40.57 SS G_CDS: 3.17 Total: -37.40 kcal Atomic # 7 Polarization: -80.51 SS G_CDS: -0.69 Total: -81.20 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.91 kcal Total: -59.76 3.65 -56.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260219743.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.495 kcal (2) G-P(sol) polarization free energy of solvation -59.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds