Wall clock time and date at job start Mon Mar 30 2020 06:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47205 * 2 1 4 4 N 1.46497 * 109.47469 * 120.00211 * 2 1 3 5 5 C 1.36336 * 125.63325 * 300.02112 * 4 2 1 6 6 C 1.34886 * 108.21490 * 179.97438 * 5 4 2 7 7 C 1.40852 * 107.42103 * 0.02562 * 6 5 4 8 8 C 1.34892 * 107.41587 * 359.97438 * 7 6 5 9 9 C 1.51194 * 109.39552 * 179.97438 * 7 6 5 10 10 C 1.50700 * 110.28219 * 223.72273 * 9 7 6 11 11 H 1.08000 * 120.00251 * 237.64409 * 10 9 7 12 12 C 1.37877 * 120.00035 * 57.65481 * 10 9 7 13 13 N 1.31518 * 120.00018 * 354.09812 * 12 10 9 14 14 Si 1.86801 * 120.00353 * 174.10380 * 12 10 9 15 15 H 1.48504 * 109.46933 * 89.99495 * 14 12 10 16 16 H 1.48496 * 109.47154 * 209.99843 * 14 12 10 17 17 H 1.48501 * 109.46917 * 329.99728 * 14 12 10 18 18 C 1.52999 * 110.28349 * 101.71924 * 9 7 6 19 19 N 1.46896 * 109.47320 * 174.95737 * 18 9 7 20 20 C 1.54337 * 105.26949 * 342.76672 * 9 7 6 21 21 C 1.51190 * 143.18149 * 179.97438 * 6 5 4 22 22 H 1.09000 * 109.47393 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46904 * 299.99615 * 1 2 3 24 24 H 1.09003 * 109.47282 * 59.99827 * 1 2 3 25 25 H 1.09004 * 109.46904 * 240.00385 * 2 1 3 26 26 H 1.08999 * 109.47631 * 180.02562 * 3 2 1 27 27 H 1.09003 * 109.47142 * 300.00258 * 3 2 1 28 28 H 1.09001 * 109.47377 * 60.00325 * 3 2 1 29 29 H 1.07998 * 125.89597 * 359.94535 * 5 4 2 30 30 H 1.07993 * 125.89001 * 179.97438 * 8 7 6 31 31 H 0.96996 * 119.99883 * 180.02562 * 13 12 10 32 32 H 1.08997 * 109.47551 * 54.95411 * 18 9 7 33 33 H 1.08997 * 109.46994 * 294.95630 * 18 9 7 34 34 H 1.00906 * 110.99995 * 62.48934 * 19 18 9 35 35 H 1.00891 * 111.00518 * 186.44616 * 19 18 9 36 36 H 1.09004 * 110.74417 * 144.95175 * 20 9 7 37 37 H 1.08998 * 110.74954 * 268.28502 * 20 9 7 38 38 H 1.08995 * 110.28618 * 316.20893 * 21 6 5 39 39 H 1.09003 * 110.28197 * 78.30750 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.7605 -0.3266 2.4844 6 6 2.3796 -1.2028 3.3021 7 6 3.0442 -2.1413 2.4888 8 6 2.8056 -1.8036 1.2048 9 6 3.7564 -3.1482 3.3634 10 6 5.1416 -3.4138 2.8325 11 1 5.4359 -4.4194 2.5705 12 6 6.0333 -2.3731 2.6816 13 7 5.6407 -1.1353 2.8896 14 14 7.7992 -2.7212 2.1815 15 1 7.9074 -2.7010 0.7005 16 1 8.6906 -1.6825 2.7573 17 1 8.2032 -4.0570 2.6891 18 6 2.9568 -4.4508 3.4319 19 7 3.7203 -5.4551 4.1845 20 6 3.8325 -2.4929 4.7586 21 6 2.6181 -1.5404 4.7564 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8900 25 1 1.8933 -0.5138 -0.8901 26 1 3.1300 1.4426 -0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.1639 0.5178 2.7965 30 1 3.1752 -2.3246 0.3341 31 1 6.2680 -0.4032 2.7830 32 1 2.7714 -4.8170 2.4222 33 1 2.0059 -4.2674 3.9321 34 1 3.8700 -5.1566 5.1367 35 1 3.2629 -6.3539 4.1550 36 1 3.7334 -3.2429 5.5434 37 1 4.7612 -1.9338 4.8726 38 1 2.8459 -0.6367 5.3216 39 1 1.7450 -2.0397 5.1765 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260285236.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:00 Heat of formation + Delta-G solvation = 59.393527 kcal Electronic energy + Delta-G solvation = -19074.070232 eV Core-core repulsion = 16403.654381 eV Total energy + Delta-G solvation = -2670.415850 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.40942 -36.91821 -34.26769 -32.27996 -31.68125 -28.52563 -27.34351 -27.12039 -26.12015 -23.96498 -22.46259 -21.33610 -19.20242 -18.19088 -17.73396 -16.15764 -15.51585 -14.98920 -14.30642 -14.04707 -14.02605 -13.55099 -13.06062 -12.91368 -12.44447 -12.30790 -12.22978 -12.01041 -11.76209 -11.50308 -11.08210 -10.90253 -10.80933 -10.65843 -10.54984 -10.42400 -9.95915 -9.72740 -9.56405 -9.18721 -8.50673 -8.08589 -7.58341 -6.90361 -6.65234 -5.59631 -3.68629 3.43555 3.45654 3.52723 3.59037 3.83088 4.48192 4.68509 4.89163 5.21708 5.29588 5.53179 5.61097 5.65607 5.68893 5.83403 5.88343 6.01484 6.12892 6.20890 6.34876 6.39534 6.43847 6.46181 6.53388 6.64925 6.83032 6.94845 7.01498 7.36038 7.64682 7.70281 7.92402 8.02639 8.16462 8.27123 8.37648 8.45622 8.55988 8.71113 8.85152 9.35126 9.91342 11.37287 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.019805 B = 0.009243 C = 0.007483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.470740 B = 3028.638996 C = 3740.849870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.138 3.862 3 C -0.159 4.159 4 N -0.451 5.451 5 C -0.021 4.021 6 C -0.183 4.183 7 C -0.076 4.076 8 C -0.020 4.020 9 C 0.136 3.864 10 C -0.482 4.482 11 H 0.062 0.938 12 C 0.062 3.938 13 N -0.867 5.867 14 Si 0.877 3.123 15 H -0.288 1.288 16 H -0.293 1.293 17 H -0.276 1.276 18 C 0.088 3.912 19 N -0.833 5.833 20 C -0.096 4.096 21 C -0.033 4.033 22 H 0.060 0.940 23 H 0.060 0.940 24 H 0.064 0.936 25 H 0.087 0.913 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.134 0.866 30 H 0.138 0.862 31 H 0.249 0.751 32 H 0.053 0.947 33 H -0.002 1.002 34 H 0.333 0.667 35 H 0.317 0.683 36 H 0.030 0.970 37 H 0.085 0.915 38 H 0.042 0.958 39 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.553 1.973 -2.488 10.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.035 3.965 3 C -0.217 4.217 4 N -0.132 5.132 5 C -0.149 4.149 6 C -0.191 4.191 7 C -0.083 4.083 8 C -0.146 4.146 9 C 0.135 3.865 10 C -0.520 4.520 11 H 0.080 0.920 12 C -0.139 4.139 13 N -0.505 5.505 14 Si 0.706 3.294 15 H -0.215 1.215 16 H -0.219 1.219 17 H -0.201 1.201 18 C -0.042 4.042 19 N -0.361 5.361 20 C -0.134 4.134 21 C -0.071 4.071 22 H 0.079 0.921 23 H 0.079 0.921 24 H 0.082 0.918 25 H 0.105 0.895 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.151 0.849 30 H 0.156 0.844 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.016 0.984 34 H 0.145 0.855 35 H 0.127 0.873 36 H 0.048 0.952 37 H 0.104 0.896 38 H 0.060 0.940 39 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -9.011 2.480 -3.332 9.923 hybrid contribution 0.305 0.157 0.171 0.384 sum -8.706 2.637 -3.161 9.630 Atomic orbital electron populations 1.22155 0.94827 1.02540 1.02138 1.21066 0.94143 0.93535 0.87756 1.22142 1.02421 0.95251 1.01898 1.43726 1.41829 1.23467 1.04152 1.20144 1.09303 1.02523 0.82893 1.20135 1.03507 0.99456 0.96002 1.20290 0.97455 0.99160 0.91390 1.20424 1.03647 0.92538 0.97941 1.17158 0.93001 0.86644 0.89707 1.20990 0.95673 0.93681 1.41681 0.91976 1.24938 0.97504 0.95340 0.96124 1.70113 1.33273 0.97820 1.49271 0.86855 0.86647 0.77724 0.78201 1.21478 1.21917 1.20079 1.21726 0.92501 0.93868 0.96143 1.58602 1.54399 1.04350 1.18777 1.22298 0.97844 0.96255 0.96979 1.20290 0.97362 0.98083 0.91340 0.92103 0.92114 0.91753 0.89461 0.91704 0.91913 0.92146 0.84871 0.84413 0.94067 0.92863 0.98373 0.85462 0.87283 0.95172 0.89623 0.93959 0.94254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 9.24 37.16 0.34 -1.57 16 2 C 0.14 2.04 3.55 -67.94 -0.24 1.80 16 3 C -0.16 -2.16 9.24 37.16 0.34 -1.81 16 4 N -0.45 -8.80 2.62 -110.01 -0.29 -9.08 16 5 C -0.02 -0.44 10.36 -16.74 -0.17 -0.61 16 6 C -0.18 -4.21 6.91 -104.58 -0.72 -4.93 16 7 C -0.08 -1.84 4.03 -104.58 -0.42 -2.26 16 8 C -0.02 -0.46 11.39 -16.74 -0.19 -0.65 16 9 C 0.14 3.32 0.47 -155.87 -0.07 3.25 16 10 C -0.48 -13.14 7.70 -34.44 -0.27 -13.41 16 11 H 0.06 1.76 7.49 -52.49 -0.39 1.37 16 12 C 0.06 1.73 4.89 -17.82 -0.09 1.64 16 13 N -0.87 -24.70 10.66 55.43 0.59 -24.10 16 14 Si 0.88 21.96 29.54 -169.99 -5.02 16.94 16 15 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 16 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 17 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 18 C 0.09 1.89 5.72 -3.83 -0.02 1.87 16 19 N -0.83 -16.10 8.80 -10.37 -0.09 -16.19 16 20 C -0.10 -2.26 5.60 -25.33 -0.14 -2.40 16 21 C -0.03 -0.72 6.75 -26.94 -0.18 -0.90 16 22 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 23 H 0.06 0.74 7.92 -51.93 -0.41 0.33 16 24 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.09 1.22 8.06 -51.93 -0.42 0.80 16 26 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.83 7.92 -51.93 -0.41 0.41 16 29 H 0.13 2.38 8.06 -52.49 -0.42 1.96 16 30 H 0.14 3.04 8.06 -52.49 -0.42 2.62 16 31 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 32 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.00 -0.04 8.13 -51.93 -0.42 -0.46 16 34 H 0.33 6.14 7.56 -39.29 -0.30 5.84 16 35 H 0.32 5.09 9.08 -39.30 -0.36 4.74 16 36 H 0.03 0.64 6.55 -51.93 -0.34 0.30 16 37 H 0.09 2.29 6.30 -51.93 -0.33 1.97 16 38 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 309.20 15.07 4.66 4.66 Total: -1.00 -30.29 309.20 -8.30 -38.59 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -6.32 Total: 9.16 kcal Atomic # 6 Polarization: -18.14 SS G_CDS: -1.83 Total: -19.97 kcal Atomic # 7 Polarization: -49.59 SS G_CDS: 0.21 Total: -49.38 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.29 -8.30 -38.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260285236.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.983 kcal (2) G-P(sol) polarization free energy of solvation -30.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds