Wall clock time and date at job start Mon Mar 30 2020 06:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47205 * 2 1 4 4 N 1.46497 * 109.47469 * 120.00211 * 2 1 3 5 5 C 1.36336 * 125.63325 * 300.02112 * 4 2 1 6 6 C 1.34886 * 108.21490 * 179.97438 * 5 4 2 7 7 C 1.40852 * 107.42103 * 0.02562 * 6 5 4 8 8 C 1.34892 * 107.41587 * 359.97438 * 7 6 5 9 9 C 1.51194 * 109.39552 * 179.97438 * 7 6 5 10 10 C 1.50700 * 110.28219 * 223.72273 * 9 7 6 11 11 H 1.08000 * 120.00251 * 237.64409 * 10 9 7 12 12 C 1.37877 * 120.00035 * 57.65481 * 10 9 7 13 13 N 1.31518 * 120.00018 * 354.09812 * 12 10 9 14 14 Si 1.86801 * 120.00353 * 174.10380 * 12 10 9 15 15 H 1.48504 * 109.46933 * 89.99495 * 14 12 10 16 16 H 1.48496 * 109.47154 * 209.99843 * 14 12 10 17 17 H 1.48501 * 109.46917 * 329.99728 * 14 12 10 18 18 C 1.52999 * 110.28349 * 101.71924 * 9 7 6 19 19 N 1.46896 * 109.47320 * 174.95737 * 18 9 7 20 20 C 1.54337 * 105.26949 * 342.76672 * 9 7 6 21 21 C 1.51190 * 143.18149 * 179.97438 * 6 5 4 22 22 H 1.09000 * 109.47393 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46904 * 299.99615 * 1 2 3 24 24 H 1.09003 * 109.47282 * 59.99827 * 1 2 3 25 25 H 1.09004 * 109.46904 * 240.00385 * 2 1 3 26 26 H 1.08999 * 109.47631 * 180.02562 * 3 2 1 27 27 H 1.09003 * 109.47142 * 300.00258 * 3 2 1 28 28 H 1.09001 * 109.47377 * 60.00325 * 3 2 1 29 29 H 1.07998 * 125.89597 * 359.94535 * 5 4 2 30 30 H 1.07993 * 125.89001 * 179.97438 * 8 7 6 31 31 H 0.96996 * 119.99883 * 180.02562 * 13 12 10 32 32 H 1.08997 * 109.47551 * 54.95411 * 18 9 7 33 33 H 1.08997 * 109.46994 * 294.95630 * 18 9 7 34 34 H 1.00906 * 110.99995 * 62.48934 * 19 18 9 35 35 H 1.00891 * 111.00518 * 186.44616 * 19 18 9 36 36 H 1.09004 * 110.74417 * 144.95175 * 20 9 7 37 37 H 1.08998 * 110.74954 * 268.28502 * 20 9 7 38 38 H 1.08995 * 110.28618 * 316.20893 * 21 6 5 39 39 H 1.09003 * 110.28197 * 78.30750 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.7605 -0.3266 2.4844 6 6 2.3796 -1.2028 3.3021 7 6 3.0442 -2.1413 2.4888 8 6 2.8056 -1.8036 1.2048 9 6 3.7564 -3.1482 3.3634 10 6 5.1416 -3.4138 2.8325 11 1 5.4359 -4.4194 2.5705 12 6 6.0333 -2.3731 2.6816 13 7 5.6407 -1.1353 2.8896 14 14 7.7992 -2.7212 2.1815 15 1 7.9074 -2.7010 0.7005 16 1 8.6906 -1.6825 2.7573 17 1 8.2032 -4.0570 2.6891 18 6 2.9568 -4.4508 3.4319 19 7 3.7203 -5.4551 4.1845 20 6 3.8325 -2.4929 4.7586 21 6 2.6181 -1.5404 4.7564 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8900 25 1 1.8933 -0.5138 -0.8901 26 1 3.1300 1.4426 -0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.1639 0.5178 2.7965 30 1 3.1752 -2.3246 0.3341 31 1 6.2680 -0.4032 2.7830 32 1 2.7714 -4.8170 2.4222 33 1 2.0059 -4.2674 3.9321 34 1 3.8700 -5.1566 5.1367 35 1 3.2629 -6.3539 4.1550 36 1 3.7334 -3.2429 5.5434 37 1 4.7612 -1.9338 4.8726 38 1 2.8459 -0.6367 5.3216 39 1 1.7450 -2.0397 5.1765 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260285236.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:59 Heat of formation + Delta-G solvation = 41.675226 kcal Electronic energy + Delta-G solvation = -19074.838555 eV Core-core repulsion = 16403.654381 eV Total energy + Delta-G solvation = -2671.184174 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.02510 -38.55540 -35.65153 -34.12595 -33.45678 -30.29527 -28.90821 -28.12666 -27.90019 -25.89869 -24.14339 -22.83814 -20.71995 -19.99995 -19.41900 -17.88776 -17.18127 -16.67901 -16.16828 -15.59428 -15.27822 -15.13986 -14.63788 -14.56897 -14.06124 -13.96636 -13.54793 -13.36160 -13.06679 -12.99938 -12.82607 -12.58757 -12.47112 -12.41370 -12.11297 -11.94107 -11.68150 -11.62327 -11.37345 -11.04792 -10.44158 -10.16931 -9.16936 -8.55810 -8.39099 -7.67049 -5.83474 1.42796 1.46431 1.55793 1.82033 2.41666 2.58582 2.73928 3.47803 3.76593 4.07546 4.12203 4.20239 4.31947 4.37979 4.64591 4.68653 4.70145 4.73428 4.75520 4.84406 4.86478 4.92362 4.97854 5.13145 5.15381 5.24791 5.26837 5.30134 5.58141 5.91575 5.92772 5.98042 6.24786 6.26421 6.52193 6.74238 6.75890 6.94303 6.97334 7.11892 7.25761 7.77513 9.22886 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.019805 B = 0.009243 C = 0.007483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.470740 B = 3028.638996 C = 3740.849870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.126 3.874 3 C -0.152 4.152 4 N -0.443 5.443 5 C -0.009 4.009 6 C -0.218 4.218 7 C -0.103 4.103 8 C -0.041 4.041 9 C 0.126 3.874 10 C -0.486 4.486 11 H 0.045 0.955 12 C 0.024 3.976 13 N -0.882 5.882 14 Si 0.925 3.075 15 H -0.289 1.289 16 H -0.294 1.294 17 H -0.276 1.276 18 C 0.098 3.902 19 N -0.841 5.841 20 C -0.092 4.092 21 C -0.026 4.026 22 H 0.052 0.948 23 H 0.061 0.939 24 H 0.097 0.903 25 H 0.092 0.908 26 H 0.036 0.964 27 H 0.099 0.901 28 H 0.060 0.940 29 H 0.163 0.837 30 H 0.133 0.867 31 H 0.242 0.758 32 H 0.042 0.958 33 H 0.009 0.991 34 H 0.338 0.662 35 H 0.337 0.663 36 H 0.047 0.953 37 H 0.048 0.952 38 H 0.041 0.959 39 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.095 2.567 -2.993 11.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.025 3.975 3 C -0.210 4.210 4 N -0.121 5.121 5 C -0.139 4.139 6 C -0.225 4.225 7 C -0.110 4.110 8 C -0.168 4.168 9 C 0.125 3.875 10 C -0.525 4.525 11 H 0.064 0.936 12 C -0.175 4.175 13 N -0.521 5.521 14 Si 0.754 3.246 15 H -0.216 1.216 16 H -0.220 1.220 17 H -0.201 1.201 18 C -0.033 4.033 19 N -0.372 5.372 20 C -0.130 4.130 21 C -0.064 4.064 22 H 0.071 0.929 23 H 0.080 0.920 24 H 0.115 0.885 25 H 0.110 0.890 26 H 0.055 0.945 27 H 0.117 0.883 28 H 0.079 0.921 29 H 0.181 0.819 30 H 0.151 0.849 31 H 0.051 0.949 32 H 0.061 0.939 33 H 0.027 0.973 34 H 0.152 0.848 35 H 0.150 0.850 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.060 0.940 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.565 3.062 -3.857 11.656 hybrid contribution 0.769 -0.044 0.272 0.817 sum -9.795 3.017 -3.585 10.858 Atomic orbital electron populations 1.22088 0.92134 1.02582 1.03846 1.21504 0.96228 0.93786 0.86025 1.22101 1.00544 0.94630 1.03733 1.44001 1.40373 1.22364 1.05411 1.20575 1.08140 1.02249 0.82900 1.20431 1.05180 1.00457 0.96478 1.20398 0.98442 0.99879 0.92292 1.20487 1.04833 0.94032 0.97479 1.17243 0.91956 0.88267 0.90043 1.21178 0.97444 0.92677 1.41209 0.93642 1.25414 1.00050 0.95389 0.96681 1.70250 1.33513 0.98021 1.50305 0.86092 0.83615 0.77273 0.77616 1.21576 1.22043 1.20097 1.21500 0.92641 0.93055 0.96058 1.58488 1.54637 1.05023 1.19006 1.22147 0.97024 0.96670 0.97195 1.20205 0.97190 0.97752 0.91231 0.92897 0.91956 0.88472 0.88968 0.94523 0.88279 0.92119 0.81944 0.84907 0.94879 0.93902 0.97302 0.84838 0.85042 0.93460 0.93346 0.94004 0.92149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.08 9.24 71.98 0.66 -2.42 16 2 C 0.13 3.43 3.55 44.99 0.16 3.59 16 3 C -0.15 -3.75 9.24 71.98 0.66 -3.09 16 4 N -0.44 -16.75 2.62 -501.97 -1.31 -18.07 16 5 C -0.01 -0.37 10.36 83.22 0.86 0.49 16 6 C -0.22 -9.86 6.91 -19.84 -0.14 -10.00 16 7 C -0.10 -5.00 4.03 -19.84 -0.08 -5.08 16 8 C -0.04 -1.89 11.39 83.22 0.95 -0.94 16 9 C 0.13 6.19 0.47 -53.06 -0.02 6.16 16 10 C -0.49 -26.93 7.70 25.60 0.20 -26.73 16 11 H 0.05 2.61 7.49 -2.91 -0.02 2.59 16 12 C 0.02 1.34 4.89 84.65 0.41 1.76 16 13 N -0.88 -51.18 10.66 21.45 0.23 -50.96 16 14 Si 0.93 45.85 29.54 68.60 2.03 47.88 16 15 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 16 H -0.29 -14.53 7.11 99.48 0.71 -13.82 16 17 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 18 C 0.10 4.17 5.72 86.30 0.49 4.66 16 19 N -0.84 -31.72 8.80 -186.73 -1.64 -33.37 16 20 C -0.09 -4.35 5.60 31.50 0.18 -4.18 16 21 C -0.03 -1.11 6.75 30.46 0.21 -0.91 16 22 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 23 H 0.06 1.29 7.92 -2.38 -0.02 1.27 16 24 H 0.10 1.40 8.14 -2.39 -0.02 1.39 16 25 H 0.09 2.41 8.06 -2.38 -0.02 2.39 16 26 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.06 1.49 7.92 -2.39 -0.02 1.47 16 29 H 0.16 5.33 8.06 -2.91 -0.02 5.31 16 30 H 0.13 6.01 8.06 -2.91 -0.02 5.99 16 31 H 0.24 13.93 8.31 -92.71 -0.77 13.16 16 32 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.01 0.36 8.13 -2.39 -0.02 0.34 16 34 H 0.34 12.11 7.56 -89.69 -0.68 11.44 16 35 H 0.34 10.34 9.08 -89.70 -0.81 9.53 16 36 H 0.05 1.99 6.55 -2.39 -0.02 1.97 16 37 H 0.05 2.64 6.30 -2.39 -0.02 2.62 16 38 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -65.52 309.20 3.39 -62.13 By element: Atomic # 1 Polarization: 29.50 SS G_CDS: -0.45 Total: 29.04 kcal Atomic # 6 Polarization: -41.21 SS G_CDS: 4.54 Total: -36.67 kcal Atomic # 7 Polarization: -99.66 SS G_CDS: -2.73 Total: -102.39 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Total: -65.52 3.39 -62.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260285236.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.806 kcal (2) G-P(sol) polarization free energy of solvation -65.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds