Wall clock time and date at job start Mon Mar 30 2020 05:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53115 * 109.52221 * 2 1 4 4 C 1.53035 * 109.28042 * 182.37740 * 3 2 1 5 5 N 1.46849 * 109.52101 * 59.18038 * 4 3 2 6 6 C 1.46902 * 110.99908 * 174.16333 * 5 4 3 7 7 C 1.50701 * 109.47050 * 170.00185 * 6 5 4 8 8 C 1.35968 * 125.95785 * 90.02546 * 7 6 5 9 9 N 1.36165 * 109.05130 * 179.97438 * 8 7 6 10 10 H 0.97001 * 125.74234 * 179.97438 * 9 8 7 11 11 C 1.38017 * 108.51584 * 359.97438 * 9 8 7 12 12 C 1.39949 * 126.35625 * 179.97438 * 11 9 8 13 13 H 1.08009 * 120.00098 * 180.02562 * 12 11 9 14 14 C 1.40068 * 119.99981 * 0.02562 * 12 11 9 15 15 N 1.30859 * 119.99851 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99936 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47106 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.46707 * 120.00065 * 16 14 12 19 19 H 1.48497 * 109.46994 * 240.00160 * 16 14 12 20 20 C 1.39301 * 125.94924 * 269.99604 * 7 6 5 21 21 C 1.46847 * 111.19957 * 298.25624 * 5 4 3 22 22 C 1.53040 * 109.52043 * 61.74578 * 21 5 4 23 23 H 1.09004 * 109.46988 * 60.00310 * 1 2 3 24 24 H 1.09001 * 109.46863 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47213 * 300.00011 * 1 2 3 26 26 H 1.08992 * 109.52215 * 120.13185 * 2 1 3 27 27 H 1.09000 * 109.50182 * 62.43625 * 3 2 1 28 28 H 1.09005 * 109.53587 * 302.33914 * 3 2 1 29 29 H 1.08995 * 109.46436 * 299.16748 * 4 3 2 30 30 H 1.09000 * 109.45677 * 179.18911 * 4 3 2 31 31 H 1.09004 * 109.47121 * 49.99570 * 6 5 4 32 32 H 1.09000 * 109.46992 * 289.99677 * 6 5 4 33 33 H 1.08000 * 125.46901 * 0.24118 * 8 7 6 34 34 H 0.96997 * 119.99981 * 179.97438 * 15 14 12 35 35 H 1.08000 * 126.47727 * 0.02562 * 20 7 6 36 36 H 1.08998 * 109.46159 * 181.75449 * 21 5 4 37 37 H 1.08998 * 109.46221 * 301.73328 * 21 5 4 38 38 H 1.08997 * 109.50202 * 180.88225 * 22 21 5 39 39 H 1.09003 * 109.53730 * 60.77580 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0417 1.4431 0.0000 4 6 3.5709 1.4371 -0.0599 5 7 4.0115 0.7426 -1.2765 6 6 5.4685 0.8374 -1.4383 7 6 5.9117 -0.0820 -2.5470 8 6 6.0130 0.2450 -3.8629 9 7 6.4447 -0.8426 -4.5592 10 1 6.5999 -0.8778 -5.5161 11 6 6.6243 -1.8865 -3.6744 12 6 7.0594 -3.1781 -3.9924 13 1 7.1640 -3.9197 -3.2142 14 6 7.3594 -3.5090 -5.3200 15 7 7.2332 -2.6103 -6.2628 16 14 7.9409 -5.2327 -5.7444 17 1 7.9998 -6.0536 -4.5083 18 1 6.9929 -5.8524 -6.7049 19 1 9.2916 -5.1625 -6.3574 20 6 6.2894 -1.4150 -2.4022 21 6 3.5722 -0.6586 -1.2767 22 6 2.0430 -0.7151 -1.2531 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.8942 -0.5157 0.8885 27 1 1.7152 1.9450 0.9108 28 1 1.6456 1.9703 -0.8680 29 1 3.9666 0.9224 0.8156 30 1 3.9377 2.4634 -0.0746 31 1 5.9571 0.5470 -0.5082 32 1 5.7405 1.8633 -1.6866 33 1 5.7913 1.2132 -4.2869 34 1 7.4412 -2.8393 -7.1821 35 1 6.3185 -1.9776 -1.4808 36 1 3.9400 -1.1544 -2.1750 37 1 3.9679 -1.1634 -0.3954 38 1 1.7175 -1.7552 -1.2374 39 1 1.6463 -0.2228 -2.1411 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260313142.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:47 Heat of formation + Delta-G solvation = 15.114565 kcal Electronic energy + Delta-G solvation = -18198.388282 eV Core-core repulsion = 15526.052351 eV Total energy + Delta-G solvation = -2672.335930 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.33655 -38.31659 -34.52974 -33.28918 -30.61978 -29.81969 -28.73359 -27.48862 -24.87890 -23.47130 -22.71853 -21.29335 -19.53725 -19.06808 -18.06856 -17.14521 -15.43710 -15.35297 -14.58857 -14.46080 -14.24877 -13.82679 -13.72267 -12.90297 -12.61592 -12.33380 -12.09009 -11.95496 -11.82640 -11.72494 -11.49865 -11.26215 -11.20974 -10.85191 -10.72725 -10.56584 -10.33761 -10.16511 -9.99989 -9.93190 -9.61887 -9.33667 -7.73411 -6.97889 -6.84010 -6.82237 -4.17776 2.95438 3.08879 3.15275 3.90289 3.96485 4.09535 4.78190 4.96498 5.04908 5.07156 5.35996 5.47366 5.54400 5.59984 5.71552 5.76952 5.85324 5.90015 5.98674 6.06837 6.11596 6.15006 6.29108 6.32490 6.37004 6.46134 6.61207 6.72570 6.74604 6.89065 7.18495 7.39075 7.62809 7.70399 7.79916 7.94518 8.11460 8.30154 8.81452 8.98082 9.24430 9.77931 10.26509 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.033887 B = 0.005010 C = 0.004645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.066138 B = 5587.545559 C = 6027.039685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.095 4.095 3 C -0.108 4.108 4 C 0.053 3.947 5 N -0.532 5.532 6 C 0.137 3.863 7 C -0.152 4.152 8 C -0.095 4.095 9 N -0.552 5.552 10 H 0.419 0.581 11 C 0.226 3.774 12 C -0.445 4.445 13 H 0.088 0.912 14 C 0.064 3.936 15 N -0.858 5.858 16 Si 0.926 3.074 17 H -0.262 1.262 18 H -0.276 1.276 19 H -0.276 1.276 20 C -0.335 4.335 21 C 0.058 3.942 22 C -0.111 4.111 23 H 0.054 0.946 24 H 0.051 0.949 25 H 0.049 0.951 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.068 0.932 29 H 0.024 0.976 30 H 0.067 0.933 31 H 0.023 0.977 32 H 0.061 0.939 33 H 0.126 0.874 34 H 0.282 0.718 35 H 0.098 0.902 36 H 0.102 0.898 37 H 0.021 0.979 38 H 0.059 0.941 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.837 4.432 7.209 11.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 C -0.146 4.146 4 C -0.075 4.075 5 N -0.256 5.256 6 C 0.010 3.990 7 C -0.160 4.160 8 C -0.224 4.224 9 N -0.158 5.158 10 H 0.265 0.735 11 C 0.111 3.889 12 C -0.481 4.481 13 H 0.106 0.894 14 C -0.147 4.147 15 N -0.492 5.492 16 Si 0.751 3.249 17 H -0.186 1.186 18 H -0.201 1.201 19 H -0.202 1.202 20 C -0.358 4.358 21 C -0.070 4.070 22 C -0.149 4.149 23 H 0.073 0.927 24 H 0.070 0.930 25 H 0.068 0.932 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.042 0.958 30 H 0.085 0.915 31 H 0.041 0.959 32 H 0.080 0.920 33 H 0.143 0.857 34 H 0.093 0.907 35 H 0.116 0.884 36 H 0.120 0.880 37 H 0.040 0.960 38 H 0.078 0.922 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.008 4.730 6.421 11.302 hybrid contribution 0.720 -1.079 0.041 1.297 sum -7.289 3.652 6.463 10.403 Atomic orbital electron populations 1.21810 0.95667 1.01354 1.01324 1.21199 0.95040 0.96395 0.98715 1.21610 0.95235 0.96371 1.01366 1.22053 0.95291 0.98736 0.91423 1.62065 1.13447 1.14655 1.35474 1.20270 0.85355 0.97827 0.95503 1.18538 1.09734 0.95186 0.92539 1.21031 1.16510 0.92700 0.92208 1.42838 1.53366 1.08775 1.10827 0.73516 1.18006 0.95803 0.87973 0.87144 1.18829 1.40180 0.95656 0.93420 0.89418 1.25869 0.93487 0.99550 0.95776 1.68833 1.42836 1.35289 1.02278 0.85955 0.78502 0.81359 0.79054 1.18588 1.20148 1.20163 1.20431 1.24561 0.95457 0.95363 1.22144 0.93613 0.88858 1.02366 1.21677 0.96217 0.99543 0.97449 0.92736 0.92957 0.93205 0.91961 0.92380 0.91338 0.95752 0.91490 0.95898 0.92042 0.85655 0.90656 0.88427 0.88006 0.96044 0.92188 0.91515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.21 37.16 0.34 -1.19 16 2 C -0.09 -1.21 2.79 -90.49 -0.25 -1.46 16 3 C -0.11 -1.36 5.38 -26.65 -0.14 -1.50 16 4 C 0.05 0.78 5.42 -3.83 -0.02 0.76 16 5 N -0.53 -9.44 4.80 -236.11 -1.13 -10.58 16 6 C 0.14 2.67 5.76 -4.97 -0.03 2.64 16 7 C -0.15 -3.52 4.20 -105.04 -0.44 -3.96 16 8 C -0.09 -2.26 11.83 -16.44 -0.19 -2.45 16 9 N -0.55 -14.30 5.77 -10.36 -0.06 -14.36 16 10 H 0.42 10.80 6.28 -40.82 -0.26 10.54 16 11 C 0.23 6.16 6.71 -83.87 -0.56 5.60 16 12 C -0.45 -12.00 9.33 -38.26 -0.36 -12.36 16 13 H 0.09 2.28 7.85 -52.48 -0.41 1.87 16 14 C 0.06 1.61 5.50 -17.28 -0.10 1.51 16 15 N -0.86 -21.87 10.69 55.56 0.59 -21.27 16 16 Si 0.93 19.15 29.56 -169.99 -5.03 14.12 16 17 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 18 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 19 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 20 C -0.34 -8.52 9.23 -38.62 -0.36 -8.87 16 21 C 0.06 1.05 4.76 -3.83 -0.02 1.04 16 22 C -0.11 -1.68 5.38 -26.65 -0.14 -1.82 16 23 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.90 8.12 -51.93 -0.42 0.48 16 31 H 0.02 0.44 8.08 -51.93 -0.42 0.02 16 32 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.13 2.68 8.06 -52.49 -0.42 2.26 16 34 H 0.28 6.58 8.30 -40.82 -0.34 6.25 16 35 H 0.10 2.42 8.06 -52.49 -0.42 2.00 16 36 H 0.10 2.23 5.66 -51.93 -0.29 1.93 16 37 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 307.60 15.07 4.64 4.64 Total: -1.00 -26.89 307.60 -9.69 -36.59 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: -6.43 Total: 12.95 kcal Atomic # 6 Polarization: -19.81 SS G_CDS: -2.27 Total: -22.09 kcal Atomic # 7 Polarization: -45.61 SS G_CDS: -0.60 Total: -46.21 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.03 Total: 14.12 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -26.89 -9.69 -36.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260313142.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.702 kcal (2) G-P(sol) polarization free energy of solvation -26.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds