Wall clock time and date at job start Mon Mar 30 2020 05:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53115 * 109.52221 * 2 1 4 4 C 1.53035 * 109.28042 * 182.37740 * 3 2 1 5 5 N 1.46849 * 109.52101 * 59.18038 * 4 3 2 6 6 C 1.46902 * 110.99908 * 174.16333 * 5 4 3 7 7 C 1.50701 * 109.47050 * 170.00185 * 6 5 4 8 8 C 1.35968 * 125.95785 * 90.02546 * 7 6 5 9 9 N 1.36165 * 109.05130 * 179.97438 * 8 7 6 10 10 H 0.97001 * 125.74234 * 179.97438 * 9 8 7 11 11 C 1.38017 * 108.51584 * 359.97438 * 9 8 7 12 12 C 1.39949 * 126.35625 * 179.97438 * 11 9 8 13 13 H 1.08009 * 120.00098 * 180.02562 * 12 11 9 14 14 C 1.40068 * 119.99981 * 0.02562 * 12 11 9 15 15 N 1.30859 * 119.99851 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99936 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47106 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.46707 * 120.00065 * 16 14 12 19 19 H 1.48497 * 109.46994 * 240.00160 * 16 14 12 20 20 C 1.39301 * 125.94924 * 269.99604 * 7 6 5 21 21 C 1.46847 * 111.19957 * 298.25624 * 5 4 3 22 22 C 1.53040 * 109.52043 * 61.74578 * 21 5 4 23 23 H 1.09004 * 109.46988 * 60.00310 * 1 2 3 24 24 H 1.09001 * 109.46863 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47213 * 300.00011 * 1 2 3 26 26 H 1.08992 * 109.52215 * 120.13185 * 2 1 3 27 27 H 1.09000 * 109.50182 * 62.43625 * 3 2 1 28 28 H 1.09005 * 109.53587 * 302.33914 * 3 2 1 29 29 H 1.08995 * 109.46436 * 299.16748 * 4 3 2 30 30 H 1.09000 * 109.45677 * 179.18911 * 4 3 2 31 31 H 1.09004 * 109.47121 * 49.99570 * 6 5 4 32 32 H 1.09000 * 109.46992 * 289.99677 * 6 5 4 33 33 H 1.08000 * 125.46901 * 0.24118 * 8 7 6 34 34 H 0.96997 * 119.99981 * 179.97438 * 15 14 12 35 35 H 1.08000 * 126.47727 * 0.02562 * 20 7 6 36 36 H 1.08998 * 109.46159 * 181.75449 * 21 5 4 37 37 H 1.08998 * 109.46221 * 301.73328 * 21 5 4 38 38 H 1.08997 * 109.50202 * 180.88225 * 22 21 5 39 39 H 1.09003 * 109.53730 * 60.77580 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0417 1.4431 0.0000 4 6 3.5709 1.4371 -0.0599 5 7 4.0115 0.7426 -1.2765 6 6 5.4685 0.8374 -1.4383 7 6 5.9117 -0.0820 -2.5470 8 6 6.0130 0.2450 -3.8629 9 7 6.4447 -0.8426 -4.5592 10 1 6.5999 -0.8778 -5.5161 11 6 6.6243 -1.8865 -3.6744 12 6 7.0594 -3.1781 -3.9924 13 1 7.1640 -3.9197 -3.2142 14 6 7.3594 -3.5090 -5.3200 15 7 7.2332 -2.6103 -6.2628 16 14 7.9409 -5.2327 -5.7444 17 1 7.9998 -6.0536 -4.5083 18 1 6.9929 -5.8524 -6.7049 19 1 9.2916 -5.1625 -6.3574 20 6 6.2894 -1.4150 -2.4022 21 6 3.5722 -0.6586 -1.2767 22 6 2.0430 -0.7151 -1.2531 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.8942 -0.5157 0.8885 27 1 1.7152 1.9450 0.9108 28 1 1.6456 1.9703 -0.8680 29 1 3.9666 0.9224 0.8156 30 1 3.9377 2.4634 -0.0746 31 1 5.9571 0.5470 -0.5082 32 1 5.7405 1.8633 -1.6866 33 1 5.7913 1.2132 -4.2869 34 1 7.4412 -2.8393 -7.1821 35 1 6.3185 -1.9776 -1.4808 36 1 3.9400 -1.1544 -2.1750 37 1 3.9679 -1.1634 -0.3954 38 1 1.7175 -1.7552 -1.2374 39 1 1.6463 -0.2228 -2.1411 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260313142.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:47 Heat of formation + Delta-G solvation = 0.221239 kcal Electronic energy + Delta-G solvation = -18199.034105 eV Core-core repulsion = 15526.052351 eV Total energy + Delta-G solvation = -2672.981753 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.11791 -39.72460 -35.93156 -35.10377 -31.96693 -31.32410 -30.71224 -28.87118 -26.60999 -25.09739 -23.95871 -22.56085 -21.26442 -20.44285 -20.04281 -18.97279 -17.33086 -16.76797 -16.30558 -15.80308 -15.34442 -15.19575 -14.85249 -14.47460 -14.24984 -14.06987 -13.73213 -13.47975 -13.19145 -13.13824 -12.88241 -12.72449 -12.69265 -12.49015 -12.19747 -12.05813 -12.00338 -11.58774 -11.46916 -11.22306 -11.08915 -11.00107 -9.23061 -8.93211 -8.75614 -8.73581 -6.19540 1.28457 1.39106 1.54619 2.02355 2.22082 2.29747 3.28570 3.41718 3.48153 3.92870 3.96539 3.99508 4.33094 4.44748 4.49565 4.59580 4.67247 4.70473 4.84612 4.85711 4.89148 4.92505 4.95822 5.02939 5.17016 5.21596 5.22640 5.31594 5.37256 5.39490 5.45450 5.59445 5.63938 5.95090 6.10852 6.25573 6.34342 6.46789 6.81863 7.04810 7.24025 7.78503 8.35927 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.033887 B = 0.005010 C = 0.004645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.066138 B = 5587.545559 C = 6027.039685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.092 4.092 3 C -0.103 4.103 4 C 0.050 3.950 5 N -0.537 5.537 6 C 0.142 3.858 7 C -0.147 4.147 8 C -0.106 4.106 9 N -0.560 5.560 10 H 0.416 0.584 11 C 0.192 3.808 12 C -0.484 4.484 13 H 0.083 0.917 14 C 0.025 3.975 15 N -0.876 5.876 16 Si 1.000 3.000 17 H -0.261 1.261 18 H -0.267 1.267 19 H -0.266 1.266 20 C -0.351 4.351 21 C 0.064 3.936 22 C -0.106 4.106 23 H 0.054 0.946 24 H 0.055 0.945 25 H 0.067 0.933 26 H 0.062 0.938 27 H 0.086 0.914 28 H 0.066 0.934 29 H 0.024 0.976 30 H 0.082 0.918 31 H 0.022 0.978 32 H 0.079 0.921 33 H 0.151 0.849 34 H 0.292 0.708 35 H 0.091 0.909 36 H 0.058 0.942 37 H 0.011 0.989 38 H 0.063 0.937 39 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.815 4.957 7.777 12.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.111 4.111 3 C -0.141 4.141 4 C -0.078 4.078 5 N -0.261 5.261 6 C 0.014 3.986 7 C -0.154 4.154 8 C -0.235 4.235 9 N -0.167 5.167 10 H 0.261 0.739 11 C 0.077 3.923 12 C -0.520 4.520 13 H 0.101 0.899 14 C -0.184 4.184 15 N -0.510 5.510 16 Si 0.822 3.178 17 H -0.185 1.185 18 H -0.192 1.192 19 H -0.191 1.191 20 C -0.374 4.374 21 C -0.064 4.064 22 C -0.144 4.144 23 H 0.073 0.927 24 H 0.074 0.926 25 H 0.086 0.914 26 H 0.081 0.919 27 H 0.104 0.896 28 H 0.084 0.916 29 H 0.043 0.957 30 H 0.101 0.899 31 H 0.040 0.960 32 H 0.097 0.903 33 H 0.168 0.832 34 H 0.103 0.897 35 H 0.110 0.890 36 H 0.077 0.923 37 H 0.029 0.971 38 H 0.081 0.919 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.001 5.287 7.001 12.569 hybrid contribution 1.017 -1.194 -0.129 1.574 sum -7.984 4.093 6.872 11.302 Atomic orbital electron populations 1.21758 0.93690 1.01936 1.02249 1.21180 0.96641 0.96220 0.97015 1.21610 0.93458 0.96328 1.02666 1.22206 0.96885 0.98958 0.89703 1.62068 1.12076 1.14291 1.37712 1.20246 0.86640 0.97680 0.93995 1.18878 1.08305 0.94742 0.93525 1.21524 1.16230 0.93185 0.92523 1.42874 1.53968 1.09140 1.10680 0.73856 1.18415 0.96969 0.88813 0.88143 1.19066 1.42331 0.95930 0.94638 0.89869 1.26760 0.92806 1.03825 0.94973 1.68863 1.42247 1.36995 1.02902 0.84849 0.78294 0.75911 0.78772 1.18456 1.19162 1.19129 1.20545 1.25304 0.96762 0.94775 1.21965 0.95769 0.88945 0.99693 1.21633 0.93745 1.00265 0.98777 0.92688 0.92639 0.91381 0.91928 0.89570 0.91570 0.95745 0.89937 0.96004 0.90282 0.83204 0.89652 0.89027 0.92306 0.97069 0.91850 0.92209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 9.21 71.98 0.66 -1.90 16 2 C -0.09 -2.14 2.79 -10.71 -0.03 -2.17 16 3 C -0.10 -2.29 5.38 30.64 0.16 -2.13 16 4 C 0.05 1.35 5.42 86.32 0.47 1.81 16 5 N -0.54 -18.64 4.80 -900.92 -4.32 -22.97 16 6 C 0.14 5.42 5.76 85.56 0.49 5.92 16 7 C -0.15 -6.92 4.20 -20.14 -0.08 -7.00 16 8 C -0.11 -5.11 11.83 83.49 0.99 -4.12 16 9 N -0.56 -29.86 5.77 -186.70 -1.08 -30.93 16 10 H 0.42 22.02 6.28 -92.71 -0.58 21.44 16 11 C 0.19 10.88 6.71 38.95 0.26 11.14 16 12 C -0.48 -27.04 9.33 23.13 0.22 -26.82 16 13 H 0.08 4.53 7.85 -2.91 -0.02 4.50 16 14 C 0.02 1.27 5.50 85.28 0.47 1.74 16 15 N -0.88 -45.03 10.69 21.86 0.23 -44.80 16 16 Si 1.00 39.18 29.56 68.60 2.03 41.20 16 17 H -0.26 -10.06 7.11 99.48 0.71 -9.36 16 18 H -0.27 -10.01 7.11 99.48 0.71 -9.30 16 19 H -0.27 -9.98 7.11 99.48 0.71 -9.27 16 20 C -0.35 -18.58 9.23 22.89 0.21 -18.37 16 21 C 0.06 2.38 4.76 86.33 0.41 2.80 16 22 C -0.11 -3.16 5.38 30.65 0.16 -2.99 16 23 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 24 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 29 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.08 1.98 8.12 -2.39 -0.02 1.96 16 31 H 0.02 0.83 8.08 -2.39 -0.02 0.81 16 32 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 33 H 0.15 6.31 8.06 -2.91 -0.02 6.29 16 34 H 0.29 13.55 8.30 -92.71 -0.77 12.78 16 35 H 0.09 4.81 8.06 -2.91 -0.02 4.78 16 36 H 0.06 2.69 5.66 -2.39 -0.01 2.67 16 37 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 38 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -59.19 307.60 1.69 -57.50 By element: Atomic # 1 Polarization: 41.66 SS G_CDS: 0.43 Total: 42.10 kcal Atomic # 6 Polarization: -46.50 SS G_CDS: 4.39 Total: -42.10 kcal Atomic # 7 Polarization: -93.53 SS G_CDS: -5.17 Total: -98.70 kcal Atomic # 14 Polarization: 39.18 SS G_CDS: 2.03 Total: 41.20 kcal Total: -59.19 1.69 -57.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260313142.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.721 kcal (2) G-P(sol) polarization free energy of solvation -59.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds