Wall clock time and date at job start Mon Mar 30 2020 06:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52997 * 109.47221 * 2 1 4 4 C 1.50700 * 109.47556 * 120.00453 * 2 1 3 5 5 C 1.34563 * 126.19429 * 125.96321 * 4 2 1 6 6 C 1.40491 * 108.03828 * 179.91192 * 5 4 2 7 7 N 1.30125 * 108.22633 * 0.10134 * 6 5 4 8 8 N 1.35199 * 126.18696 * 305.96253 * 4 2 1 9 9 C 1.46496 * 126.00501 * 0.04221 * 8 4 2 10 10 C 1.50946 * 123.48350 * 180.14372 * 6 5 4 11 11 C 1.53371 * 108.20879 * 16.69478 * 10 6 5 12 12 C 1.53024 * 109.75522 * 309.34098 * 11 10 6 13 13 C 1.50886 * 128.33094 * 359.85271 * 5 4 2 14 14 H 1.09001 * 109.75253 * 76.99264 * 13 5 4 15 15 C 1.50700 * 109.71680 * 316.36963 * 13 5 4 16 16 H 1.08004 * 120.00207 * 1.25371 * 15 13 5 17 17 C 1.37879 * 120.00187 * 180.98804 * 15 13 5 18 18 N 1.31517 * 119.99381 * 359.97438 * 17 15 13 19 19 Si 1.86796 * 120.00217 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47229 * 59.99520 * 19 17 15 21 21 H 1.48497 * 109.47223 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47027 * 299.99296 * 19 17 15 23 23 H 1.09003 * 109.47160 * 299.99524 * 1 2 3 24 24 H 1.09000 * 109.47564 * 59.99370 * 1 2 3 25 25 H 1.09003 * 109.47512 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47160 * 240.00476 * 2 1 3 27 27 H 1.09003 * 109.47394 * 184.44887 * 3 2 1 28 28 H 1.09003 * 109.47281 * 304.44827 * 3 2 1 29 29 H 1.08995 * 109.47144 * 64.44630 * 3 2 1 30 30 H 1.09002 * 109.47912 * 95.10228 * 9 8 4 31 31 H 1.08999 * 109.47501 * 215.10663 * 9 8 4 32 32 H 1.09004 * 109.47310 * 335.10265 * 9 8 4 33 33 H 1.09002 * 109.71692 * 257.01975 * 10 6 5 34 34 H 1.09002 * 109.75526 * 136.39548 * 10 6 5 35 35 H 1.09002 * 109.42612 * 189.25359 * 11 10 6 36 36 H 1.08997 * 109.37884 * 69.39803 * 11 10 6 37 37 H 1.09000 * 109.42769 * 311.62611 * 12 11 10 38 38 H 1.09000 * 109.38927 * 191.75384 * 12 11 10 39 39 H 0.97004 * 119.99372 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 6 2.8985 -1.7400 1.2555 6 6 3.1028 -2.1040 2.5969 7 7 2.3821 -1.3208 3.3455 8 7 1.6944 -0.4288 2.5088 9 6 0.7721 0.6229 2.9440 10 6 4.0190 -3.2245 3.0255 11 6 4.9456 -3.5618 1.8508 12 6 4.1164 -3.7743 0.5824 13 6 3.5671 -2.4290 0.0915 14 1 4.3846 -1.8121 -0.2816 15 6 2.5624 -2.6604 -1.0077 16 1 1.5435 -2.3230 -0.8878 17 6 2.9453 -3.2981 -2.1686 18 7 4.1875 -3.7038 -2.3170 19 14 1.6998 -3.5856 -3.5307 20 1 1.1663 -2.2806 -3.9973 21 1 2.3578 -4.2844 -4.6638 22 1 0.5852 -4.4199 -3.0142 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 3.1270 1.4435 -0.0797 28 1 1.6130 1.9788 -0.8475 29 1 1.7431 1.9328 0.9271 30 1 -0.2238 0.2005 3.0779 31 1 1.1188 1.0424 3.8884 32 1 0.7349 1.4087 2.1894 33 1 3.4283 -4.1012 3.2913 34 1 4.6127 -2.9074 3.8829 35 1 5.5014 -4.4717 2.0772 36 1 5.6441 -2.7400 1.6936 37 1 3.2867 -4.4469 0.8001 38 1 4.7455 -4.2134 -0.1919 39 1 4.4569 -4.1521 -3.1339 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260321904.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:36 Heat of formation + Delta-G solvation = 53.791400 kcal Electronic energy + Delta-G solvation = -19218.008492 eV Core-core repulsion = 16547.349715 eV Total energy + Delta-G solvation = -2670.658777 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.80023 -36.12323 -35.08717 -32.62830 -31.57199 -30.24011 -27.35604 -26.82387 -26.43088 -24.70001 -22.00798 -21.32035 -20.72389 -18.38922 -17.84222 -16.27266 -15.34883 -14.88938 -14.61716 -14.41173 -14.00771 -13.42525 -13.01019 -12.92817 -12.74571 -12.56414 -12.26683 -12.01733 -11.79519 -11.62743 -11.05503 -10.93591 -10.87558 -10.77360 -10.63509 -10.54420 -10.26610 -9.90571 -9.73329 -9.59169 -9.06667 -8.73017 -8.31506 -8.27835 -7.16205 -5.94621 -3.98547 2.67347 3.20109 3.32342 3.37982 3.40162 3.73927 4.46931 4.96815 5.15507 5.31904 5.36603 5.44593 5.49338 5.62846 5.63712 5.81472 5.88461 5.89898 6.01406 6.09439 6.15446 6.22206 6.38530 6.50417 6.59600 6.66780 6.69936 6.74642 6.78211 6.99437 7.19340 7.22739 7.51122 7.61391 7.80081 7.95409 8.05746 8.16579 8.50429 8.61187 9.02824 9.63898 11.11035 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.018107 B = 0.010817 C = 0.007470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.027156 B = 2587.853571 C = 3747.294473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.044 4.044 3 C -0.144 4.144 4 C 0.086 3.914 5 C -0.184 4.184 6 C 0.068 3.932 7 N -0.315 5.315 8 N -0.393 5.393 9 C 0.106 3.894 10 C -0.030 4.030 11 C -0.118 4.118 12 C -0.104 4.104 13 C 0.118 3.882 14 H 0.032 0.968 15 C -0.505 4.505 16 H 0.060 0.940 17 C 0.063 3.937 18 N -0.888 5.888 19 Si 0.884 3.116 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.278 1.278 23 H 0.046 0.954 24 H 0.056 0.944 25 H 0.058 0.942 26 H 0.133 0.867 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.044 0.956 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.052 0.948 36 H 0.054 0.946 37 H 0.039 0.961 38 H 0.086 0.914 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.737 6.672 5.888 9.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.064 4.064 3 C -0.202 4.202 4 C -0.037 4.037 5 C -0.194 4.194 6 C -0.099 4.099 7 N -0.137 5.137 8 N -0.178 5.178 9 C -0.036 4.036 10 C -0.070 4.070 11 C -0.156 4.156 12 C -0.142 4.142 13 C 0.099 3.901 14 H 0.050 0.950 15 C -0.543 4.543 16 H 0.078 0.922 17 C -0.138 4.138 18 N -0.527 5.527 19 Si 0.712 3.288 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.204 1.204 23 H 0.065 0.935 24 H 0.075 0.925 25 H 0.077 0.923 26 H 0.150 0.850 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.063 0.937 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.104 0.896 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.058 0.942 38 H 0.105 0.895 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.067 6.996 6.986 10.691 hybrid contribution -0.639 -0.341 -1.421 1.595 sum -4.706 6.655 5.565 9.870 Atomic orbital electron populations 1.21928 0.95501 1.02144 1.00909 1.20143 0.94841 0.94969 0.96429 1.21900 1.01779 0.95841 1.00638 1.20336 0.99158 0.98630 0.85532 1.20586 1.03633 0.99517 0.95696 1.22321 0.97544 0.97122 0.92887 1.76796 1.13143 1.05939 1.17796 1.48153 1.37613 1.28172 1.03841 1.21775 0.91741 0.88783 1.01294 1.20046 0.95110 0.93579 0.98238 1.21693 0.97750 1.00026 0.96142 1.21617 0.98405 0.99825 0.94355 1.17275 0.93995 0.90981 0.87830 0.95020 1.21186 0.96242 1.37240 0.99618 0.92165 1.24951 0.94993 0.95701 0.98136 1.69895 1.16141 1.39872 1.26803 0.86785 0.81740 0.78440 0.81835 1.20263 1.21397 1.20408 0.93501 0.92471 0.92289 0.84978 0.92285 0.92406 0.93709 0.92051 0.90769 0.89587 0.91016 0.91755 0.92971 0.92701 0.94230 0.89513 0.93038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 8.98 37.15 0.33 -1.93 16 2 C -0.04 -0.79 2.33 -91.78 -0.21 -1.00 16 3 C -0.14 -2.15 9.07 37.16 0.34 -1.81 16 4 C 0.09 1.76 5.35 -82.41 -0.44 1.32 16 5 C -0.18 -4.20 5.40 -104.98 -0.57 -4.77 16 6 C 0.07 1.47 7.10 -82.35 -0.58 0.89 16 7 N -0.32 -6.65 12.56 33.75 0.42 -6.23 16 8 N -0.39 -7.47 4.02 -64.01 -0.26 -7.73 16 9 C 0.11 1.46 9.74 59.84 0.58 2.04 16 10 C -0.03 -0.57 6.31 -27.57 -0.17 -0.74 16 11 C -0.12 -2.28 5.86 -26.53 -0.16 -2.44 16 12 C -0.10 -2.43 4.80 -26.52 -0.13 -2.56 16 13 C 0.12 2.93 2.37 -92.64 -0.22 2.71 16 14 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 15 C -0.50 -13.18 6.72 -34.44 -0.23 -13.41 16 16 H 0.06 1.56 6.09 -52.48 -0.32 1.24 16 17 C 0.06 1.69 5.31 -17.82 -0.09 1.59 16 18 N -0.89 -24.48 11.48 55.43 0.64 -23.84 16 19 Si 0.88 20.64 29.54 -169.99 -5.02 15.62 16 20 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 H 0.05 0.62 5.37 -51.93 -0.28 0.34 16 24 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.13 2.77 5.26 -51.93 -0.27 2.50 16 27 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.04 0.59 5.63 -51.93 -0.29 0.30 16 30 H 0.06 0.77 8.03 -51.93 -0.42 0.35 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.09 1.02 4.36 -51.93 -0.23 0.79 16 33 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 34 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.05 1.07 8.10 -51.93 -0.42 0.65 16 37 H 0.04 0.96 8.08 -51.93 -0.42 0.54 16 38 H 0.09 2.21 6.44 -51.93 -0.33 1.87 16 39 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 297.20 15.07 4.48 4.48 Total: -1.00 -29.22 297.20 -7.22 -36.43 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -5.92 Total: 1.37 kcal Atomic # 6 Polarization: -18.55 SS G_CDS: -1.56 Total: -20.11 kcal Atomic # 7 Polarization: -38.60 SS G_CDS: 0.80 Total: -37.80 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.22 -7.22 -36.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260321904.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.225 kcal (2) G-P(sol) polarization free energy of solvation -29.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds