Wall clock time and date at job start Mon Mar 30 2020 06:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52997 * 109.47221 * 2 1 4 4 C 1.50700 * 109.47556 * 120.00453 * 2 1 3 5 5 C 1.34563 * 126.19429 * 125.96321 * 4 2 1 6 6 C 1.40491 * 108.03828 * 179.91192 * 5 4 2 7 7 N 1.30125 * 108.22633 * 0.10134 * 6 5 4 8 8 N 1.35199 * 126.18696 * 305.96253 * 4 2 1 9 9 C 1.46496 * 126.00501 * 0.04221 * 8 4 2 10 10 C 1.50946 * 123.48350 * 180.14372 * 6 5 4 11 11 C 1.53371 * 108.20879 * 16.69478 * 10 6 5 12 12 C 1.53024 * 109.75522 * 309.34098 * 11 10 6 13 13 C 1.50886 * 128.33094 * 359.85271 * 5 4 2 14 14 H 1.09001 * 109.75253 * 76.99264 * 13 5 4 15 15 C 1.50700 * 109.71680 * 316.36963 * 13 5 4 16 16 H 1.08004 * 120.00207 * 1.25371 * 15 13 5 17 17 C 1.37879 * 120.00187 * 180.98804 * 15 13 5 18 18 N 1.31517 * 119.99381 * 359.97438 * 17 15 13 19 19 Si 1.86796 * 120.00217 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47229 * 59.99520 * 19 17 15 21 21 H 1.48497 * 109.47223 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47027 * 299.99296 * 19 17 15 23 23 H 1.09003 * 109.47160 * 299.99524 * 1 2 3 24 24 H 1.09000 * 109.47564 * 59.99370 * 1 2 3 25 25 H 1.09003 * 109.47512 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47160 * 240.00476 * 2 1 3 27 27 H 1.09003 * 109.47394 * 184.44887 * 3 2 1 28 28 H 1.09003 * 109.47281 * 304.44827 * 3 2 1 29 29 H 1.08995 * 109.47144 * 64.44630 * 3 2 1 30 30 H 1.09002 * 109.47912 * 95.10228 * 9 8 4 31 31 H 1.08999 * 109.47501 * 215.10663 * 9 8 4 32 32 H 1.09004 * 109.47310 * 335.10265 * 9 8 4 33 33 H 1.09002 * 109.71692 * 257.01975 * 10 6 5 34 34 H 1.09002 * 109.75526 * 136.39548 * 10 6 5 35 35 H 1.09002 * 109.42612 * 189.25359 * 11 10 6 36 36 H 1.08997 * 109.37884 * 69.39803 * 11 10 6 37 37 H 1.09000 * 109.42769 * 311.62611 * 12 11 10 38 38 H 1.09000 * 109.38927 * 191.75384 * 12 11 10 39 39 H 0.97004 * 119.99372 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 6 2.8985 -1.7400 1.2555 6 6 3.1028 -2.1040 2.5969 7 7 2.3821 -1.3208 3.3455 8 7 1.6944 -0.4288 2.5088 9 6 0.7721 0.6229 2.9440 10 6 4.0190 -3.2245 3.0255 11 6 4.9456 -3.5618 1.8508 12 6 4.1164 -3.7743 0.5824 13 6 3.5671 -2.4290 0.0915 14 1 4.3846 -1.8121 -0.2816 15 6 2.5624 -2.6604 -1.0077 16 1 1.5435 -2.3230 -0.8878 17 6 2.9453 -3.2981 -2.1686 18 7 4.1875 -3.7038 -2.3170 19 14 1.6998 -3.5856 -3.5307 20 1 1.1663 -2.2806 -3.9973 21 1 2.3578 -4.2844 -4.6638 22 1 0.5852 -4.4199 -3.0142 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 3.1270 1.4435 -0.0797 28 1 1.6130 1.9788 -0.8475 29 1 1.7431 1.9328 0.9271 30 1 -0.2238 0.2005 3.0779 31 1 1.1188 1.0424 3.8884 32 1 0.7349 1.4087 2.1894 33 1 3.4283 -4.1012 3.2913 34 1 4.6127 -2.9074 3.8829 35 1 5.5014 -4.4717 2.0772 36 1 5.6441 -2.7400 1.6936 37 1 3.2867 -4.4469 0.8001 38 1 4.7455 -4.2134 -0.1919 39 1 4.4569 -4.1521 -3.1339 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260321904.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:36 Heat of formation + Delta-G solvation = 37.548818 kcal Electronic energy + Delta-G solvation = -19218.712823 eV Core-core repulsion = 16547.349715 eV Total energy + Delta-G solvation = -2671.363108 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.36423 -37.75488 -36.60369 -34.47452 -32.98941 -31.97753 -29.01881 -28.07410 -27.90300 -26.51881 -23.48595 -22.91828 -22.44466 -19.94430 -19.44762 -18.26108 -16.90851 -16.34038 -16.33484 -15.98066 -15.46939 -14.89145 -14.54176 -14.49194 -14.22162 -14.08065 -13.66595 -13.45102 -13.29897 -12.94663 -12.81852 -12.69725 -12.53388 -12.30491 -12.11578 -12.02321 -11.92685 -11.68162 -11.38400 -11.25442 -10.88329 -10.64866 -10.29228 -9.78854 -8.83781 -7.97685 -6.08055 1.11322 1.44571 1.46057 1.52463 1.82077 2.06516 2.50646 3.27781 3.64808 3.76610 4.07976 4.15920 4.29694 4.30228 4.35432 4.43768 4.54393 4.66144 4.73020 4.77153 4.85882 4.93256 4.95827 4.99632 5.02186 5.10555 5.19633 5.25787 5.31974 5.39816 5.42500 5.59885 5.71285 5.75890 5.98022 6.05261 6.24557 6.43831 6.52248 6.95258 7.03005 7.56552 9.06194 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.018107 B = 0.010817 C = 0.007470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.027156 B = 2587.853571 C = 3747.294473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.047 4.047 3 C -0.137 4.137 4 C 0.094 3.906 5 C -0.231 4.231 6 C 0.055 3.945 7 N -0.328 5.328 8 N -0.387 5.387 9 C 0.093 3.907 10 C -0.027 4.027 11 C -0.108 4.108 12 C -0.096 4.096 13 C 0.122 3.878 14 H -0.007 1.007 15 C -0.508 4.508 16 H 0.058 0.942 17 C 0.016 3.984 18 N -0.917 5.917 19 Si 0.941 3.059 20 H -0.266 1.266 21 H -0.288 1.288 22 H -0.278 1.278 23 H 0.073 0.927 24 H 0.078 0.922 25 H 0.035 0.965 26 H 0.095 0.905 27 H 0.040 0.960 28 H 0.082 0.918 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.109 0.891 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.079 0.921 36 H 0.048 0.952 37 H 0.023 0.977 38 H 0.059 0.941 39 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.417 8.133 6.892 11.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.067 4.067 3 C -0.195 4.195 4 C -0.031 4.031 5 C -0.242 4.242 6 C -0.112 4.112 7 N -0.150 5.150 8 N -0.171 5.171 9 C -0.047 4.047 10 C -0.066 4.066 11 C -0.146 4.146 12 C -0.135 4.135 13 C 0.103 3.897 14 H 0.011 0.989 15 C -0.546 4.546 16 H 0.076 0.924 17 C -0.182 4.182 18 N -0.557 5.557 19 Si 0.768 3.232 20 H -0.191 1.191 21 H -0.214 1.214 22 H -0.203 1.203 23 H 0.092 0.908 24 H 0.097 0.903 25 H 0.055 0.945 26 H 0.113 0.887 27 H 0.059 0.941 28 H 0.101 0.899 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.110 0.890 32 H 0.127 0.873 33 H 0.100 0.900 34 H 0.108 0.892 35 H 0.097 0.903 36 H 0.067 0.933 37 H 0.042 0.958 38 H 0.078 0.922 39 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -5.764 8.476 8.014 13.012 hybrid contribution -0.155 -0.713 -1.711 1.860 sum -5.919 7.763 6.303 11.620 Atomic orbital electron populations 1.21896 0.93181 1.01457 1.03366 1.20130 0.96734 0.96160 0.93682 1.21849 1.00665 0.94009 1.02944 1.20672 0.97823 0.97648 0.86985 1.20557 1.06149 1.01784 0.95699 1.22679 0.98155 0.97956 0.92368 1.76727 1.13590 1.06423 1.18245 1.48514 1.37297 1.28263 1.03048 1.22233 0.91508 0.88079 1.02904 1.20098 0.94862 0.93257 0.98340 1.21573 0.97371 1.01101 0.94590 1.21421 0.97822 0.98566 0.95655 1.17048 0.92805 0.91181 0.88657 0.98926 1.21427 0.96393 1.36562 1.00260 0.92361 1.25641 0.96564 0.95757 1.00270 1.70035 1.17684 1.40761 1.27211 0.85864 0.79543 0.78631 0.79198 1.19050 1.21377 1.20348 0.90829 0.90260 0.94529 0.88651 0.94123 0.89949 0.91450 0.90274 0.88985 0.87338 0.90005 0.89158 0.90280 0.93281 0.95787 0.92244 0.93266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.01 8.98 71.98 0.65 -3.36 16 2 C -0.05 -1.63 2.33 -11.54 -0.03 -1.66 16 3 C -0.14 -3.79 9.07 71.98 0.65 -3.14 16 4 C 0.09 3.79 5.35 41.20 0.22 4.01 16 5 C -0.23 -10.76 5.40 -20.10 -0.11 -10.87 16 6 C 0.05 2.34 7.10 43.44 0.31 2.65 16 7 N -0.33 -13.35 12.56 -47.14 -0.59 -13.94 16 8 N -0.39 -13.94 4.02 -356.44 -1.43 -15.38 16 9 C 0.09 2.19 9.74 127.77 1.24 3.44 16 10 C -0.03 -0.96 6.31 30.05 0.19 -0.77 16 11 C -0.11 -4.21 5.86 30.73 0.18 -4.03 16 12 C -0.10 -4.70 4.80 30.73 0.15 -4.55 16 13 C 0.12 6.35 2.37 -12.10 -0.03 6.32 16 14 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 15 C -0.51 -27.51 6.72 25.60 0.17 -27.34 16 16 H 0.06 3.10 6.09 -2.91 -0.02 3.09 16 17 C 0.02 0.87 5.31 84.65 0.45 1.32 16 18 N -0.92 -52.53 11.48 21.45 0.25 -52.29 16 19 Si 0.94 43.06 29.54 68.60 2.03 45.09 16 20 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 21 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 22 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 23 H 0.07 1.66 5.37 -2.39 -0.01 1.65 16 24 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 25 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.10 4.07 5.26 -2.39 -0.01 4.06 16 27 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.07 1.54 5.63 -2.39 -0.01 1.52 16 30 H 0.08 1.65 8.03 -2.39 -0.02 1.63 16 31 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.11 2.06 4.36 -2.38 -0.01 2.05 16 33 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 34 H 0.09 2.80 8.14 -2.39 -0.02 2.78 16 35 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 36 H 0.05 1.94 8.10 -2.39 -0.02 1.92 16 37 H 0.02 1.19 8.08 -2.39 -0.02 1.17 16 38 H 0.06 3.18 6.44 -2.39 -0.02 3.17 16 39 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 Total: -1.00 -65.56 297.20 5.33 -60.23 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: 1.04 Total: 14.27 kcal Atomic # 6 Polarization: -42.03 SS G_CDS: 4.05 Total: -37.98 kcal Atomic # 7 Polarization: -79.83 SS G_CDS: -1.78 Total: -81.61 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -65.56 5.33 -60.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260321904.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.775 kcal (2) G-P(sol) polarization free energy of solvation -65.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds