Wall clock time and date at job start Mon Mar 30 2020 06:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.46871 * 2 1 4 4 C 1.50697 * 109.47323 * 119.99978 * 2 1 3 5 5 C 1.34575 * 126.19151 * 114.02926 * 4 2 1 6 6 C 1.40490 * 108.03389 * 180.02562 * 5 4 2 7 7 N 1.30119 * 108.23495 * 359.89684 * 6 5 4 8 8 N 1.35205 * 126.19086 * 294.00114 * 4 2 1 9 9 C 1.46502 * 126.00173 * 359.95793 * 8 4 2 10 10 C 1.50951 * 123.48188 * 179.77408 * 6 5 4 11 11 C 1.53372 * 108.20281 * 343.30774 * 10 6 5 12 12 C 1.53029 * 109.75208 * 50.67088 * 11 10 6 13 13 C 1.50879 * 128.32716 * 0.04805 * 5 4 2 14 14 H 1.08998 * 109.72092 * 283.08672 * 13 5 4 15 15 C 1.50701 * 109.75169 * 43.71597 * 13 5 4 16 16 H 1.08001 * 120.00142 * 358.76025 * 15 13 5 17 17 C 1.37880 * 119.99443 * 178.75931 * 15 13 5 18 18 N 1.31506 * 120.00514 * 359.97438 * 17 15 13 19 19 Si 1.86808 * 119.99374 * 180.02562 * 17 15 13 20 20 H 1.48494 * 109.47437 * 90.00079 * 19 17 15 21 21 H 1.48508 * 109.46466 * 209.99848 * 19 17 15 22 22 H 1.48496 * 109.47050 * 329.99369 * 19 17 15 23 23 H 1.09005 * 109.47364 * 306.39258 * 1 2 3 24 24 H 1.08993 * 109.47471 * 66.39413 * 1 2 3 25 25 H 1.09001 * 109.47188 * 186.39686 * 1 2 3 26 26 H 1.09001 * 109.47425 * 240.00377 * 2 1 3 27 27 H 1.09005 * 109.46505 * 180.02562 * 3 2 1 28 28 H 1.08997 * 109.46901 * 300.00103 * 3 2 1 29 29 H 1.08995 * 109.47363 * 60.00353 * 3 2 1 30 30 H 1.09003 * 109.47224 * 265.07911 * 9 8 4 31 31 H 1.08999 * 109.47256 * 25.07948 * 9 8 4 32 32 H 1.09003 * 109.46699 * 145.07988 * 9 8 4 33 33 H 1.08999 * 109.72097 * 223.63124 * 10 6 5 34 34 H 1.09003 * 109.71432 * 102.98494 * 10 6 5 35 35 H 1.08995 * 109.42344 * 290.58543 * 11 10 6 36 36 H 1.09001 * 109.42428 * 170.75443 * 11 10 6 37 37 H 1.08996 * 109.43012 * 48.36925 * 12 11 10 38 38 H 1.08999 * 109.42582 * 168.21576 * 12 11 10 39 39 H 0.97003 * 120.00380 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 2.7142 -1.8703 1.2556 6 6 2.9906 -2.1833 2.5970 7 7 2.4933 -1.2423 3.3455 8 7 1.8800 -0.2974 2.5088 9 6 1.1965 0.9232 2.9439 10 6 3.7404 -3.4213 3.0258 11 6 3.7465 -4.4084 1.8519 12 6 4.2230 -3.6992 0.5824 13 6 3.1390 -2.7314 0.0917 14 1 2.2836 -3.2955 -0.2800 15 6 3.6925 -1.8633 -1.0087 16 1 3.7160 -0.7901 -0.8899 17 6 4.1691 -2.4392 -2.1673 18 7 4.1410 -3.7460 -2.3118 19 14 4.8559 -1.3631 -3.5311 20 1 6.3133 -1.1695 -3.3225 21 1 4.6266 -2.0204 -4.8430 22 1 4.1735 -0.0444 -3.5122 23 1 -0.3634 0.6097 0.8273 24 1 -0.3634 0.4115 -0.9416 25 1 -0.3633 -1.0213 0.1145 26 1 1.8933 -0.5138 -0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6765 1.9563 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.9268 1.7218 3.0742 31 1 0.4657 1.2184 2.1909 32 1 0.6884 0.7374 3.8902 33 1 3.2433 -3.8736 3.8839 34 1 4.7646 -3.1578 3.2901 35 1 2.7385 -4.7924 1.6960 36 1 4.4181 -5.2366 2.0782 37 1 5.1348 -3.1424 0.7985 38 1 4.4259 -4.4391 -0.1918 39 1 4.4760 -4.1512 -3.1271 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260321919.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:38 Heat of formation + Delta-G solvation = 53.614776 kcal Electronic energy + Delta-G solvation = -19218.070899 eV Core-core repulsion = 16547.404463 eV Total energy + Delta-G solvation = -2670.666436 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.79602 -36.11930 -35.08621 -32.63128 -31.56864 -30.24017 -27.35555 -26.82293 -26.42692 -24.70225 -22.00416 -21.32242 -20.72087 -18.38801 -17.84036 -16.27581 -15.35081 -14.89076 -14.61010 -14.41194 -14.01394 -13.42684 -13.01617 -12.92388 -12.73274 -12.55671 -12.26644 -12.01466 -11.79578 -11.62640 -11.06700 -10.94053 -10.86078 -10.78047 -10.64138 -10.54315 -10.24618 -9.90603 -9.73682 -9.58983 -9.07115 -8.72964 -8.31562 -8.27687 -7.16134 -5.94753 -3.98750 2.67468 3.20252 3.31385 3.38798 3.40322 3.73992 4.46764 4.97230 5.16252 5.31259 5.35554 5.45193 5.49216 5.62788 5.63616 5.81597 5.89089 5.90020 6.01459 6.09725 6.15903 6.22012 6.38841 6.50470 6.59898 6.66788 6.70077 6.74687 6.78505 6.99529 7.19336 7.22796 7.51324 7.61531 7.80119 7.95526 8.05718 8.16884 8.50404 8.61268 9.02886 9.63815 11.10789 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.018112 B = 0.010811 C = 0.007468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.541947 B = 2589.287836 C = 3748.356799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.044 4.044 3 C -0.147 4.147 4 C 0.086 3.914 5 C -0.184 4.184 6 C 0.068 3.932 7 N -0.316 5.316 8 N -0.393 5.393 9 C 0.106 3.894 10 C -0.030 4.030 11 C -0.118 4.118 12 C -0.104 4.104 13 C 0.118 3.882 14 H 0.032 0.968 15 C -0.504 4.504 16 H 0.061 0.939 17 C 0.063 3.937 18 N -0.888 5.888 19 Si 0.883 3.117 20 H -0.282 1.282 21 H -0.288 1.288 22 H -0.274 1.274 23 H 0.044 0.956 24 H 0.058 0.942 25 H 0.057 0.943 26 H 0.133 0.867 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.046 0.954 30 H 0.061 0.939 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.071 0.929 35 H 0.054 0.946 36 H 0.051 0.949 37 H 0.039 0.961 38 H 0.087 0.913 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.065 5.769 5.888 9.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.064 4.064 3 C -0.204 4.204 4 C -0.037 4.037 5 C -0.195 4.195 6 C -0.099 4.099 7 N -0.137 5.137 8 N -0.178 5.178 9 C -0.036 4.036 10 C -0.070 4.070 11 C -0.156 4.156 12 C -0.142 4.142 13 C 0.099 3.901 14 H 0.050 0.950 15 C -0.542 4.542 16 H 0.079 0.921 17 C -0.138 4.138 18 N -0.527 5.527 19 Si 0.712 3.288 20 H -0.208 1.208 21 H -0.214 1.214 22 H -0.199 1.199 23 H 0.063 0.937 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.151 0.849 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.104 0.896 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.058 0.942 38 H 0.105 0.895 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.263 6.193 6.988 10.718 hybrid contribution 0.551 0.474 -1.423 1.598 sum -4.713 6.668 5.565 9.881 Atomic orbital electron populations 1.21891 0.95526 1.01811 1.00850 1.20148 0.94492 0.95334 0.96412 1.21922 1.01854 0.95774 1.00892 1.20356 1.01510 0.96258 0.85534 1.20586 1.05316 0.97861 0.95694 1.22322 0.98815 0.95853 0.92887 1.76796 1.17534 1.01547 1.17802 1.48162 1.46542 1.19222 1.03851 1.21775 0.96513 0.83981 1.01298 1.20048 0.98066 0.90619 0.98237 1.21691 1.00940 0.96824 0.96150 1.21619 0.98675 0.99579 0.94354 1.17278 0.93817 0.91173 0.87846 0.95030 1.21223 1.40145 0.93186 0.99660 0.92106 1.24950 0.95862 0.94824 0.98155 1.69895 1.46888 1.09026 1.26887 0.86726 0.79536 0.80791 0.81781 1.20845 1.21351 1.19880 0.93734 0.92327 0.92387 0.84949 0.92303 0.92483 0.93507 0.92069 0.89624 0.90768 0.91756 0.91012 0.92706 0.92981 0.94249 0.89464 0.93094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 9.04 37.15 0.34 -1.80 16 2 C -0.04 -0.79 2.34 -91.77 -0.21 -1.01 16 3 C -0.15 -2.27 8.98 37.16 0.33 -1.94 16 4 C 0.09 1.76 5.35 -82.40 -0.44 1.32 16 5 C -0.18 -4.21 5.40 -104.98 -0.57 -4.77 16 6 C 0.07 1.47 7.10 -82.35 -0.58 0.89 16 7 N -0.32 -6.65 12.56 33.75 0.42 -6.23 16 8 N -0.39 -7.47 4.02 -64.01 -0.26 -7.73 16 9 C 0.11 1.46 9.80 59.85 0.59 2.05 16 10 C -0.03 -0.57 6.31 -27.57 -0.17 -0.74 16 11 C -0.12 -2.28 5.86 -26.52 -0.16 -2.44 16 12 C -0.10 -2.44 4.80 -26.52 -0.13 -2.57 16 13 C 0.12 2.92 2.37 -92.64 -0.22 2.70 16 14 H 0.03 0.86 8.14 -51.93 -0.42 0.43 16 15 C -0.50 -13.15 6.73 -34.44 -0.23 -13.38 16 16 H 0.06 1.58 6.09 -52.49 -0.32 1.26 16 17 C 0.06 1.68 5.31 -17.82 -0.09 1.59 16 18 N -0.89 -24.46 11.46 55.43 0.64 -23.83 16 19 Si 0.88 20.63 29.54 -169.99 -5.02 15.61 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 21 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 22 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 23 H 0.04 0.57 5.73 -51.93 -0.30 0.28 16 24 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 26 H 0.13 2.78 5.26 -51.93 -0.27 2.50 16 27 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.05 0.62 5.36 -51.93 -0.28 0.34 16 30 H 0.06 0.77 8.02 -51.93 -0.42 0.35 16 31 H 0.09 1.01 4.34 -51.93 -0.23 0.79 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.05 1.07 8.10 -51.93 -0.42 0.65 16 36 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.04 0.95 8.07 -51.93 -0.42 0.53 16 38 H 0.09 2.22 6.42 -51.93 -0.33 1.89 16 39 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 297.26 15.07 4.48 4.48 Total: -1.00 -29.21 297.26 -7.22 -36.43 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -5.92 Total: 1.35 kcal Atomic # 6 Polarization: -18.54 SS G_CDS: -1.55 Total: -20.09 kcal Atomic # 7 Polarization: -38.58 SS G_CDS: 0.80 Total: -37.78 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.21 -7.22 -36.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260321919.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.045 kcal (2) G-P(sol) polarization free energy of solvation -29.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds