Wall clock time and date at job start Mon Mar 30 2020 06:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.46871 * 2 1 4 4 C 1.50697 * 109.47323 * 119.99978 * 2 1 3 5 5 C 1.34575 * 126.19151 * 114.02926 * 4 2 1 6 6 C 1.40490 * 108.03389 * 180.02562 * 5 4 2 7 7 N 1.30119 * 108.23495 * 359.89684 * 6 5 4 8 8 N 1.35205 * 126.19086 * 294.00114 * 4 2 1 9 9 C 1.46502 * 126.00173 * 359.95793 * 8 4 2 10 10 C 1.50951 * 123.48188 * 179.77408 * 6 5 4 11 11 C 1.53372 * 108.20281 * 343.30774 * 10 6 5 12 12 C 1.53029 * 109.75208 * 50.67088 * 11 10 6 13 13 C 1.50879 * 128.32716 * 0.04805 * 5 4 2 14 14 H 1.08998 * 109.72092 * 283.08672 * 13 5 4 15 15 C 1.50701 * 109.75169 * 43.71597 * 13 5 4 16 16 H 1.08001 * 120.00142 * 358.76025 * 15 13 5 17 17 C 1.37880 * 119.99443 * 178.75931 * 15 13 5 18 18 N 1.31506 * 120.00514 * 359.97438 * 17 15 13 19 19 Si 1.86808 * 119.99374 * 180.02562 * 17 15 13 20 20 H 1.48494 * 109.47437 * 90.00079 * 19 17 15 21 21 H 1.48508 * 109.46466 * 209.99848 * 19 17 15 22 22 H 1.48496 * 109.47050 * 329.99369 * 19 17 15 23 23 H 1.09005 * 109.47364 * 306.39258 * 1 2 3 24 24 H 1.08993 * 109.47471 * 66.39413 * 1 2 3 25 25 H 1.09001 * 109.47188 * 186.39686 * 1 2 3 26 26 H 1.09001 * 109.47425 * 240.00377 * 2 1 3 27 27 H 1.09005 * 109.46505 * 180.02562 * 3 2 1 28 28 H 1.08997 * 109.46901 * 300.00103 * 3 2 1 29 29 H 1.08995 * 109.47363 * 60.00353 * 3 2 1 30 30 H 1.09003 * 109.47224 * 265.07911 * 9 8 4 31 31 H 1.08999 * 109.47256 * 25.07948 * 9 8 4 32 32 H 1.09003 * 109.46699 * 145.07988 * 9 8 4 33 33 H 1.08999 * 109.72097 * 223.63124 * 10 6 5 34 34 H 1.09003 * 109.71432 * 102.98494 * 10 6 5 35 35 H 1.08995 * 109.42344 * 290.58543 * 11 10 6 36 36 H 1.09001 * 109.42428 * 170.75443 * 11 10 6 37 37 H 1.08996 * 109.43012 * 48.36925 * 12 11 10 38 38 H 1.08999 * 109.42582 * 168.21576 * 12 11 10 39 39 H 0.97003 * 120.00380 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 2.7142 -1.8703 1.2556 6 6 2.9906 -2.1833 2.5970 7 7 2.4933 -1.2423 3.3455 8 7 1.8800 -0.2974 2.5088 9 6 1.1965 0.9232 2.9439 10 6 3.7404 -3.4213 3.0258 11 6 3.7465 -4.4084 1.8519 12 6 4.2230 -3.6992 0.5824 13 6 3.1390 -2.7314 0.0917 14 1 2.2836 -3.2955 -0.2800 15 6 3.6925 -1.8633 -1.0087 16 1 3.7160 -0.7901 -0.8899 17 6 4.1691 -2.4392 -2.1673 18 7 4.1410 -3.7460 -2.3118 19 14 4.8559 -1.3631 -3.5311 20 1 6.3133 -1.1695 -3.3225 21 1 4.6266 -2.0204 -4.8430 22 1 4.1735 -0.0444 -3.5122 23 1 -0.3634 0.6097 0.8273 24 1 -0.3634 0.4115 -0.9416 25 1 -0.3633 -1.0213 0.1145 26 1 1.8933 -0.5138 -0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6765 1.9563 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.9268 1.7218 3.0742 31 1 0.4657 1.2184 2.1909 32 1 0.6884 0.7374 3.8902 33 1 3.2433 -3.8736 3.8839 34 1 4.7646 -3.1578 3.2901 35 1 2.7385 -4.7924 1.6960 36 1 4.4181 -5.2366 2.0782 37 1 5.1348 -3.1424 0.7985 38 1 4.4259 -4.4391 -0.1918 39 1 4.4760 -4.1512 -3.1271 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260321919.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:38 Heat of formation + Delta-G solvation = 37.381183 kcal Electronic energy + Delta-G solvation = -19218.774840 eV Core-core repulsion = 16547.404463 eV Total energy + Delta-G solvation = -2671.370377 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.36013 -37.75218 -36.60268 -34.47680 -32.98647 -31.97754 -29.01836 -28.07814 -27.89647 -26.52090 -23.48311 -22.92005 -22.44237 -19.94256 -19.44669 -18.26492 -16.90925 -16.34322 -16.33251 -15.97346 -15.47462 -14.89569 -14.54454 -14.49910 -14.22159 -14.06736 -13.66334 -13.43847 -13.29657 -12.95738 -12.84416 -12.69321 -12.51890 -12.30937 -12.11138 -12.01490 -11.91809 -11.68345 -11.38153 -11.26024 -10.88791 -10.65307 -10.29137 -9.78737 -8.83678 -7.97725 -6.08171 1.11469 1.43525 1.45604 1.53878 1.82208 2.06613 2.50488 3.27703 3.65092 3.76896 4.07219 4.15715 4.29196 4.30510 4.35503 4.43539 4.54873 4.65976 4.73314 4.78800 4.84334 4.92963 4.95766 4.99911 5.02457 5.10662 5.19754 5.26209 5.32045 5.39745 5.42528 5.59871 5.71440 5.75986 5.98141 6.05306 6.24851 6.43973 6.52258 6.95395 7.03100 7.56525 9.06160 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.018112 B = 0.010811 C = 0.007468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.541947 B = 2589.287836 C = 3748.356799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.047 4.047 3 C -0.141 4.141 4 C 0.094 3.906 5 C -0.231 4.231 6 C 0.055 3.945 7 N -0.328 5.328 8 N -0.387 5.387 9 C 0.093 3.907 10 C -0.027 4.027 11 C -0.108 4.108 12 C -0.097 4.097 13 C 0.122 3.878 14 H -0.007 1.007 15 C -0.507 4.507 16 H 0.059 0.941 17 C 0.016 3.984 18 N -0.917 5.917 19 Si 0.941 3.059 20 H -0.283 1.283 21 H -0.286 1.286 22 H -0.263 1.263 23 H 0.071 0.929 24 H 0.078 0.922 25 H 0.038 0.962 26 H 0.096 0.904 27 H 0.035 0.965 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.108 0.892 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.048 0.952 36 H 0.078 0.922 37 H 0.023 0.977 38 H 0.059 0.941 39 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.880 7.847 6.909 11.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.067 4.067 3 C -0.199 4.199 4 C -0.031 4.031 5 C -0.242 4.242 6 C -0.112 4.112 7 N -0.150 5.150 8 N -0.171 5.171 9 C -0.047 4.047 10 C -0.065 4.065 11 C -0.146 4.146 12 C -0.135 4.135 13 C 0.103 3.897 14 H 0.011 0.989 15 C -0.545 4.545 16 H 0.077 0.923 17 C -0.182 4.182 18 N -0.557 5.557 19 Si 0.767 3.233 20 H -0.209 1.209 21 H -0.212 1.212 22 H -0.187 1.187 23 H 0.090 0.910 24 H 0.097 0.903 25 H 0.058 0.942 26 H 0.114 0.886 27 H 0.054 0.946 28 H 0.097 0.903 29 H 0.092 0.908 30 H 0.097 0.903 31 H 0.126 0.874 32 H 0.110 0.890 33 H 0.108 0.892 34 H 0.100 0.900 35 H 0.067 0.933 36 H 0.097 0.903 37 H 0.042 0.958 38 H 0.078 0.922 39 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -6.090 8.296 8.034 13.056 hybrid contribution 0.740 -0.110 -1.720 1.876 sum -5.350 8.185 6.314 11.640 Atomic orbital electron populations 1.21838 0.92926 1.01457 1.03161 1.20135 0.96639 0.96263 0.93675 1.21890 1.00387 0.94249 1.03335 1.20685 0.99882 0.95564 0.86977 1.20556 1.08409 0.99544 0.95698 1.22679 0.99205 0.96907 0.92369 1.76728 1.18053 1.01958 1.18250 1.48522 1.45623 1.19917 1.03059 1.22233 0.97294 0.82262 1.02904 1.20099 0.98666 0.89446 0.98338 1.21572 1.00987 0.97478 0.94596 1.21423 0.97708 0.98700 0.95657 1.17051 0.92621 0.91377 0.88672 0.98923 1.21456 1.39514 0.93262 1.00296 0.92336 1.25639 0.96414 0.95901 1.00292 1.70033 1.47936 1.10397 1.27328 0.85809 0.78645 0.79701 0.79104 1.20942 1.21211 1.18672 0.91034 0.90269 0.94242 0.88626 0.94568 0.90333 0.90801 0.90290 0.87379 0.88988 0.89165 0.90002 0.93280 0.90300 0.95814 0.92198 0.93278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.76 9.04 71.98 0.65 -3.11 16 2 C -0.05 -1.64 2.34 -11.54 -0.03 -1.66 16 3 C -0.14 -4.01 8.98 71.98 0.65 -3.37 16 4 C 0.09 3.79 5.35 41.20 0.22 4.01 16 5 C -0.23 -10.76 5.40 -20.10 -0.11 -10.87 16 6 C 0.05 2.34 7.10 43.44 0.31 2.65 16 7 N -0.33 -13.35 12.56 -47.14 -0.59 -13.94 16 8 N -0.39 -13.94 4.02 -356.41 -1.43 -15.38 16 9 C 0.09 2.20 9.80 127.77 1.25 3.45 16 10 C -0.03 -0.96 6.31 30.05 0.19 -0.77 16 11 C -0.11 -4.21 5.86 30.73 0.18 -4.03 16 12 C -0.10 -4.71 4.80 30.73 0.15 -4.57 16 13 C 0.12 6.33 2.37 -12.10 -0.03 6.30 16 14 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 15 C -0.51 -27.43 6.73 25.60 0.17 -27.26 16 16 H 0.06 3.12 6.09 -2.91 -0.02 3.10 16 17 C 0.02 0.86 5.31 84.66 0.45 1.31 16 18 N -0.92 -52.50 11.46 21.45 0.25 -52.26 16 19 Si 0.94 43.05 29.54 68.60 2.03 45.08 16 20 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 21 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 22 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 23 H 0.07 1.56 5.73 -2.38 -0.01 1.55 16 24 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 25 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.10 4.08 5.26 -2.39 -0.01 4.07 16 27 H 0.04 1.18 8.14 -2.38 -0.02 1.16 16 28 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.07 1.67 5.36 -2.39 -0.01 1.66 16 30 H 0.08 1.64 8.02 -2.39 -0.02 1.63 16 31 H 0.11 2.05 4.34 -2.39 -0.01 2.04 16 32 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.09 2.79 8.14 -2.39 -0.02 2.78 16 34 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 35 H 0.05 1.94 8.10 -2.39 -0.02 1.92 16 36 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 37 H 0.02 1.18 8.07 -2.39 -0.02 1.16 16 38 H 0.06 3.21 6.42 -2.39 -0.02 3.19 16 39 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 Total: -1.00 -65.55 297.26 5.33 -60.21 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: 1.04 Total: 14.18 kcal Atomic # 6 Polarization: -41.95 SS G_CDS: 4.05 Total: -37.90 kcal Atomic # 7 Polarization: -79.79 SS G_CDS: -1.78 Total: -81.57 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -65.55 5.33 -60.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260321919.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.595 kcal (2) G-P(sol) polarization free energy of solvation -65.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds