Wall clock time and date at job start Mon Mar 30 2020 05:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.33018 * 126.27177 * 2 1 4 4 C 1.31008 * 109.98076 * 180.27713 * 3 2 1 5 5 C 1.50703 * 125.17646 * 179.71812 * 4 3 2 6 6 C 1.53009 * 109.46903 * 224.99660 * 5 4 3 7 7 C 1.52997 * 109.47428 * 104.99558 * 5 4 3 8 8 C 1.52997 * 109.47372 * 179.97438 * 7 5 4 9 9 C 1.53003 * 109.46922 * 60.00271 * 8 7 5 10 10 C 1.53006 * 109.46878 * 299.99894 * 9 8 7 11 11 C 1.52993 * 109.47109 * 344.99115 * 5 4 3 12 12 N 1.35078 * 109.64935 * 359.71232 * 4 3 2 13 13 H 0.96994 * 126.48443 * 180.02562 * 12 4 3 14 14 C 1.38439 * 107.02599 * 0.02562 * 12 4 3 15 15 C 1.40059 * 127.05500 * 180.02562 * 14 12 4 16 16 H 1.08004 * 119.99414 * 172.59529 * 15 14 12 17 17 C 1.40067 * 120.00635 * 352.86895 * 15 14 12 18 18 N 1.30855 * 119.99577 * 6.16775 * 17 15 14 19 19 Si 1.86798 * 120.00311 * 186.16970 * 17 15 14 20 20 H 1.48498 * 109.47233 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.46951 * 120.00274 * 19 17 15 22 22 H 1.48507 * 109.47137 * 239.99844 * 19 17 15 23 23 H 1.08996 * 109.47550 * 274.79341 * 1 2 3 24 24 H 1.09002 * 109.47178 * 34.79361 * 1 2 3 25 25 H 1.09002 * 109.47311 * 154.78749 * 1 2 3 26 26 H 1.09001 * 109.47108 * 59.99851 * 6 5 4 27 27 H 1.08997 * 109.46798 * 179.97438 * 6 5 4 28 28 H 1.08998 * 109.46992 * 299.99884 * 6 5 4 29 29 H 1.08998 * 109.47080 * 300.00016 * 7 5 4 30 30 H 1.09011 * 109.46860 * 59.99945 * 7 5 4 31 31 H 1.08998 * 109.47257 * 300.00184 * 8 7 5 32 32 H 1.09001 * 109.47303 * 180.02562 * 8 7 5 33 33 H 1.09002 * 109.47156 * 180.02562 * 9 8 7 34 34 H 1.08998 * 109.47226 * 59.99894 * 9 8 7 35 35 H 1.08998 * 109.47192 * 300.00021 * 10 9 8 36 36 H 1.08998 * 109.47048 * 180.02562 * 10 9 8 37 37 H 1.08999 * 109.47911 * 300.00224 * 11 5 4 38 38 H 1.09007 * 109.47353 * 60.00444 * 11 5 4 39 39 H 0.96998 * 119.99880 * 174.99154 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2939 1.0724 0.0000 4 6 3.5514 0.7049 -0.0060 5 6 4.7302 1.6437 -0.0139 6 6 5.7593 1.1615 -1.0385 7 6 5.3691 1.6721 1.3760 8 6 6.5663 2.6248 1.3677 9 6 6.0957 4.0319 0.9939 10 6 5.4569 4.0035 -0.3961 11 6 4.2593 3.0506 -0.3876 12 7 3.6305 -0.6435 -0.0037 13 1 4.4428 -1.1736 -0.0067 14 6 2.3329 -1.1257 0.0035 15 6 1.9311 -2.4675 0.0086 16 1 0.8882 -2.7183 0.1346 17 6 2.8824 -3.4841 -0.1441 18 7 4.1570 -3.1888 -0.1703 19 14 2.3318 -5.2613 -0.3104 20 1 0.8495 -5.3279 -0.2509 21 1 2.7994 -5.8047 -1.6109 22 1 2.9088 -6.0641 0.7977 23 1 -0.3634 0.0859 1.0240 24 1 -0.3634 0.8439 -0.5864 25 1 -0.3634 -0.9298 -0.4378 26 1 5.3041 1.1413 -2.0287 27 1 6.6117 1.8408 -1.0446 28 1 6.0948 0.1592 -0.7723 29 1 4.6360 2.0156 2.1058 30 1 5.7047 0.6697 1.6421 31 1 7.2992 2.2809 0.6379 32 1 7.0217 2.6446 2.3578 33 1 6.9487 4.7105 0.9876 34 1 5.3628 4.3757 1.7237 35 1 6.1898 3.6596 -1.1259 36 1 5.1221 5.0059 -0.6626 37 1 3.8041 3.0305 -1.3778 38 1 3.5261 3.3942 0.3423 39 1 4.8184 -3.8976 -0.2028 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260325700.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:56 Heat of formation + Delta-G solvation = 0.326403 kcal Electronic energy + Delta-G solvation = -18797.701674 eV Core-core repulsion = 16124.724481 eV Total energy + Delta-G solvation = -2672.977193 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.22190 -38.27884 -33.72483 -32.33976 -30.87816 -30.32891 -29.37215 -26.89668 -26.22639 -23.96416 -22.17422 -21.70684 -19.56254 -18.45324 -17.86474 -17.33822 -15.71452 -14.83092 -14.40103 -14.29111 -14.07504 -13.49585 -13.09262 -12.93596 -12.45369 -12.35689 -11.87266 -11.78249 -11.65747 -11.51870 -11.34994 -11.16526 -11.06217 -10.91109 -10.65319 -10.61678 -10.56553 -10.32149 -9.82993 -9.71639 -9.61366 -9.43628 -8.22710 -8.05440 -6.96200 -6.85732 -4.26187 2.89027 3.04443 3.10770 3.76579 3.89418 4.47081 4.86980 5.09134 5.12459 5.24544 5.31499 5.53957 5.66586 5.73207 5.79616 5.82725 5.91583 5.95141 6.09462 6.22018 6.27287 6.38107 6.43180 6.45702 6.50156 6.61661 6.64144 6.72816 6.83586 6.88040 6.96518 7.03179 7.04363 7.24038 7.43463 7.86138 7.92278 8.55018 8.76333 8.83997 9.56536 9.96260 10.16443 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.029970 B = 0.006634 C = 0.005784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.056845 B = 4219.476965 C = 4839.433804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.026 4.026 2 C -0.161 4.161 3 N -0.472 5.472 4 C 0.096 3.904 5 C 0.049 3.951 6 C -0.143 4.143 7 C -0.105 4.105 8 C -0.119 4.119 9 C -0.117 4.117 10 C -0.122 4.122 11 C -0.088 4.088 12 N -0.560 5.560 13 H 0.420 0.580 14 C 0.200 3.800 15 C -0.436 4.436 16 H 0.093 0.907 17 C 0.065 3.935 18 N -0.852 5.852 19 Si 0.927 3.073 20 H -0.260 1.260 21 H -0.275 1.275 22 H -0.276 1.276 23 H 0.033 0.967 24 H 0.039 0.961 25 H 0.050 0.950 26 H 0.052 0.948 27 H 0.059 0.941 28 H 0.050 0.950 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.056 0.944 37 H 0.060 0.940 38 H 0.069 0.931 39 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.176 6.180 0.513 8.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.290 4.290 3 N -0.192 5.192 4 C -0.161 4.161 5 C 0.047 3.953 6 C -0.200 4.200 7 C -0.143 4.143 8 C -0.157 4.157 9 C -0.155 4.155 10 C -0.160 4.160 11 C -0.126 4.126 12 N -0.174 5.174 13 H 0.266 0.734 14 C 0.082 3.918 15 C -0.472 4.472 16 H 0.111 0.889 17 C -0.147 4.147 18 N -0.485 5.485 19 Si 0.753 3.247 20 H -0.184 1.184 21 H -0.200 1.200 22 H -0.201 1.201 23 H 0.052 0.948 24 H 0.058 0.942 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.087 0.913 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.083 6.960 0.430 8.630 hybrid contribution 0.568 -2.092 -0.033 2.168 sum 5.651 4.868 0.398 7.469 Atomic orbital electron populations 1.19438 0.90326 0.99700 0.98905 1.20571 0.94351 0.88249 1.25842 1.69054 0.99926 1.32041 1.18166 1.21832 0.93169 0.82731 1.18358 1.18457 0.89960 0.92607 0.94296 1.21967 0.98385 1.00612 0.99064 1.21602 0.96756 0.98908 0.97070 1.21589 0.98025 0.95301 1.00752 1.21521 0.99755 0.96669 0.97507 1.21653 0.98270 0.99222 0.96848 1.21293 0.96433 0.92731 1.02151 1.43454 1.09261 1.05945 1.58765 0.73426 1.18695 0.82255 0.93634 0.97248 1.18779 0.95711 0.88207 1.44471 0.88886 1.25913 0.94269 1.02235 0.92282 1.68948 1.01597 1.35635 1.42301 0.85923 0.80015 0.80456 0.78355 1.18401 1.20039 1.20112 0.94786 0.94194 0.93121 0.92839 0.92261 0.93074 0.91938 0.92493 0.91932 0.92614 0.92793 0.92152 0.92112 0.92542 0.92101 0.91262 0.90508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -0.57 10.28 36.00 0.37 -0.20 16 2 C -0.16 -4.25 7.25 -81.56 -0.59 -4.84 16 3 N -0.47 -12.19 10.42 -6.06 -0.06 -12.25 16 4 C 0.10 2.30 6.41 -154.96 -0.99 1.31 16 5 C 0.05 0.92 0.74 -155.66 -0.11 0.80 16 6 C -0.14 -2.44 7.64 37.16 0.28 -2.16 16 7 C -0.10 -1.79 4.71 -26.73 -0.13 -1.92 16 8 C -0.12 -1.60 5.65 -26.73 -0.15 -1.76 16 9 C -0.12 -1.47 5.92 -26.73 -0.16 -1.63 16 10 C -0.12 -1.64 5.65 -26.70 -0.15 -1.79 16 11 C -0.09 -1.51 4.26 -26.71 -0.11 -1.63 16 12 N -0.56 -14.37 5.64 -7.86 -0.04 -14.41 16 13 H 0.42 10.61 5.98 -40.82 -0.24 10.37 16 14 C 0.20 5.47 6.74 -83.68 -0.56 4.90 16 15 C -0.44 -11.53 9.04 -38.21 -0.35 -11.88 16 16 H 0.09 2.36 7.37 -52.48 -0.39 1.97 16 17 C 0.07 1.61 5.49 -17.28 -0.09 1.52 16 18 N -0.85 -21.26 10.82 55.56 0.60 -20.66 16 19 Si 0.93 18.77 29.57 -169.99 -5.03 13.74 16 20 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 21 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 22 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 23 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.05 1.07 7.52 -51.93 -0.39 0.68 16 26 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 27 H 0.06 0.85 4.81 -51.93 -0.25 0.60 16 28 H 0.05 0.91 7.61 -51.93 -0.40 0.52 16 29 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 30 H 0.06 1.02 8.14 -51.92 -0.42 0.60 16 31 H 0.06 0.80 6.43 -51.93 -0.33 0.47 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.78 6.43 -51.93 -0.33 0.44 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.07 1.28 8.06 -51.92 -0.42 0.87 16 39 H 0.28 6.48 8.30 -40.82 -0.34 6.14 16 LS Contribution 301.48 15.07 4.54 4.54 Total: -1.00 -28.16 301.48 -8.85 -37.01 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: -6.11 Total: 11.30 kcal Atomic # 6 Polarization: -16.52 SS G_CDS: -2.75 Total: -19.27 kcal Atomic # 7 Polarization: -47.82 SS G_CDS: 0.49 Total: -47.32 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.03 Total: 13.74 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -28.16 -8.85 -37.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260325700.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.338 kcal (2) G-P(sol) polarization free energy of solvation -28.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds