Wall clock time and date at job start Mon Mar 30 2020 05:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.33018 * 126.27177 * 2 1 4 4 C 1.31008 * 109.98076 * 180.27713 * 3 2 1 5 5 C 1.50703 * 125.17646 * 179.71812 * 4 3 2 6 6 C 1.53009 * 109.46903 * 224.99660 * 5 4 3 7 7 C 1.52997 * 109.47428 * 104.99558 * 5 4 3 8 8 C 1.52997 * 109.47372 * 179.97438 * 7 5 4 9 9 C 1.53003 * 109.46922 * 60.00271 * 8 7 5 10 10 C 1.53006 * 109.46878 * 299.99894 * 9 8 7 11 11 C 1.52993 * 109.47109 * 344.99115 * 5 4 3 12 12 N 1.35078 * 109.64935 * 359.71232 * 4 3 2 13 13 H 0.96994 * 126.48443 * 180.02562 * 12 4 3 14 14 C 1.38439 * 107.02599 * 0.02562 * 12 4 3 15 15 C 1.40059 * 127.05500 * 180.02562 * 14 12 4 16 16 H 1.08004 * 119.99414 * 172.59529 * 15 14 12 17 17 C 1.40067 * 120.00635 * 352.86895 * 15 14 12 18 18 N 1.30855 * 119.99577 * 6.16775 * 17 15 14 19 19 Si 1.86798 * 120.00311 * 186.16970 * 17 15 14 20 20 H 1.48498 * 109.47233 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.46951 * 120.00274 * 19 17 15 22 22 H 1.48507 * 109.47137 * 239.99844 * 19 17 15 23 23 H 1.08996 * 109.47550 * 274.79341 * 1 2 3 24 24 H 1.09002 * 109.47178 * 34.79361 * 1 2 3 25 25 H 1.09002 * 109.47311 * 154.78749 * 1 2 3 26 26 H 1.09001 * 109.47108 * 59.99851 * 6 5 4 27 27 H 1.08997 * 109.46798 * 179.97438 * 6 5 4 28 28 H 1.08998 * 109.46992 * 299.99884 * 6 5 4 29 29 H 1.08998 * 109.47080 * 300.00016 * 7 5 4 30 30 H 1.09011 * 109.46860 * 59.99945 * 7 5 4 31 31 H 1.08998 * 109.47257 * 300.00184 * 8 7 5 32 32 H 1.09001 * 109.47303 * 180.02562 * 8 7 5 33 33 H 1.09002 * 109.47156 * 180.02562 * 9 8 7 34 34 H 1.08998 * 109.47226 * 59.99894 * 9 8 7 35 35 H 1.08998 * 109.47192 * 300.00021 * 10 9 8 36 36 H 1.08998 * 109.47048 * 180.02562 * 10 9 8 37 37 H 1.08999 * 109.47911 * 300.00224 * 11 5 4 38 38 H 1.09007 * 109.47353 * 60.00444 * 11 5 4 39 39 H 0.96998 * 119.99880 * 174.99154 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2939 1.0724 0.0000 4 6 3.5514 0.7049 -0.0060 5 6 4.7302 1.6437 -0.0139 6 6 5.7593 1.1615 -1.0385 7 6 5.3691 1.6721 1.3760 8 6 6.5663 2.6248 1.3677 9 6 6.0957 4.0319 0.9939 10 6 5.4569 4.0035 -0.3961 11 6 4.2593 3.0506 -0.3876 12 7 3.6305 -0.6435 -0.0037 13 1 4.4428 -1.1736 -0.0067 14 6 2.3329 -1.1257 0.0035 15 6 1.9311 -2.4675 0.0086 16 1 0.8882 -2.7183 0.1346 17 6 2.8824 -3.4841 -0.1441 18 7 4.1570 -3.1888 -0.1703 19 14 2.3318 -5.2613 -0.3104 20 1 0.8495 -5.3279 -0.2509 21 1 2.7994 -5.8047 -1.6109 22 1 2.9088 -6.0641 0.7977 23 1 -0.3634 0.0859 1.0240 24 1 -0.3634 0.8439 -0.5864 25 1 -0.3634 -0.9298 -0.4378 26 1 5.3041 1.1413 -2.0287 27 1 6.6117 1.8408 -1.0446 28 1 6.0948 0.1592 -0.7723 29 1 4.6360 2.0156 2.1058 30 1 5.7047 0.6697 1.6421 31 1 7.2992 2.2809 0.6379 32 1 7.0217 2.6446 2.3578 33 1 6.9487 4.7105 0.9876 34 1 5.3628 4.3757 1.7237 35 1 6.1898 3.6596 -1.1259 36 1 5.1221 5.0059 -0.6626 37 1 3.8041 3.0305 -1.3778 38 1 3.5261 3.3942 0.3423 39 1 4.8184 -3.8976 -0.2028 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260325700.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:55 Heat of formation + Delta-G solvation = -14.402902 kcal Electronic energy + Delta-G solvation = -18798.340385 eV Core-core repulsion = 16124.724481 eV Total energy + Delta-G solvation = -2673.615904 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.06648 -39.69157 -35.62500 -33.84832 -32.62037 -31.63719 -31.20269 -28.75775 -27.67566 -25.71316 -23.42606 -23.26926 -21.14753 -20.36489 -19.53878 -19.06862 -17.40872 -16.51818 -16.00400 -15.69392 -15.32372 -15.15835 -14.75798 -14.58480 -13.82946 -13.67822 -13.52495 -13.44667 -13.27713 -13.04500 -12.93303 -12.82027 -12.58763 -12.44636 -12.40109 -12.01695 -11.94492 -11.86073 -11.33799 -11.05295 -11.02244 -10.86351 -10.21025 -10.04550 -8.90898 -8.77221 -6.24294 1.23505 1.38592 1.54279 1.90085 2.19123 2.57713 3.11891 3.30856 3.75468 3.87098 3.92532 4.20820 4.38786 4.41456 4.45301 4.54273 4.67462 4.68748 4.80193 4.81482 4.92830 4.93936 5.07403 5.08447 5.10952 5.18473 5.20073 5.29458 5.31682 5.37224 5.40625 5.44752 5.50385 5.60270 5.72400 5.91644 5.96224 6.56517 6.80978 6.88060 7.59997 7.98776 8.30290 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.029970 B = 0.006634 C = 0.005784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.056845 B = 4219.476965 C = 4839.433804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.019 4.019 2 C -0.194 4.194 3 N -0.496 5.496 4 C 0.101 3.899 5 C 0.043 3.957 6 C -0.135 4.135 7 C -0.100 4.100 8 C -0.112 4.112 9 C -0.114 4.114 10 C -0.115 4.115 11 C -0.082 4.082 12 N -0.567 5.567 13 H 0.419 0.581 14 C 0.162 3.838 15 C -0.469 4.469 16 H 0.094 0.906 17 C 0.026 3.974 18 N -0.871 5.871 19 Si 1.002 2.998 20 H -0.257 1.257 21 H -0.269 1.269 22 H -0.266 1.266 23 H 0.042 0.958 24 H 0.049 0.951 25 H 0.055 0.945 26 H 0.040 0.960 27 H 0.096 0.904 28 H 0.038 0.962 29 H 0.043 0.957 30 H 0.041 0.959 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.054 0.946 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.042 0.958 38 H 0.048 0.952 39 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.788 6.507 0.413 9.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.322 4.322 3 N -0.217 5.217 4 C -0.158 4.158 5 C 0.041 3.959 6 C -0.192 4.192 7 C -0.139 4.139 8 C -0.150 4.150 9 C -0.152 4.152 10 C -0.152 4.152 11 C -0.120 4.120 12 N -0.181 5.181 13 H 0.264 0.736 14 C 0.045 3.955 15 C -0.504 4.504 16 H 0.112 0.888 17 C -0.184 4.184 18 N -0.504 5.504 19 Si 0.823 3.177 20 H -0.180 1.180 21 H -0.194 1.194 22 H -0.191 1.191 23 H 0.061 0.939 24 H 0.068 0.932 25 H 0.074 0.926 26 H 0.059 0.941 27 H 0.115 0.885 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.104 0.896 34 H 0.073 0.927 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.061 0.939 38 H 0.067 0.933 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 6.684 7.302 0.336 9.905 hybrid contribution 0.104 -2.151 0.009 2.154 sum 6.788 5.151 0.345 8.528 Atomic orbital electron populations 1.19437 0.88239 1.00377 0.99662 1.21247 0.96170 0.88369 1.26454 1.69103 1.00798 1.32111 1.19642 1.22988 0.94396 0.82968 1.15400 1.18748 0.88697 0.92397 0.96086 1.21915 0.98911 1.00849 0.97549 1.21533 0.97918 0.99257 0.95170 1.21574 0.96234 0.94792 1.02368 1.21531 1.00702 0.96480 0.96471 1.21626 0.96646 0.98911 0.98067 1.21224 0.97862 0.92688 1.00275 1.43551 1.08862 1.06605 1.59075 0.73606 1.19179 0.83124 0.94627 0.98603 1.19017 0.96345 0.88698 1.46379 0.88829 1.26828 0.94094 1.06428 0.91094 1.68977 1.02500 1.37337 1.41581 0.84811 0.79654 0.74634 0.78558 1.18030 1.19433 1.19077 0.93931 0.93212 0.92577 0.94114 0.88539 0.94252 0.93844 0.94061 0.90593 0.90868 0.89628 0.92694 0.90754 0.90768 0.93907 0.93347 0.89538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.88 10.28 71.23 0.73 -0.15 16 2 C -0.19 -10.65 7.25 42.71 0.31 -10.34 16 3 N -0.50 -26.57 10.42 -173.09 -1.80 -28.38 16 4 C 0.10 4.99 6.41 137.97 0.88 5.87 16 5 C 0.04 1.60 0.74 -52.93 -0.04 1.57 16 6 C -0.13 -4.49 7.64 71.99 0.55 -3.94 16 7 C -0.10 -3.38 4.71 30.59 0.14 -3.24 16 8 C -0.11 -2.69 5.65 30.59 0.17 -2.52 16 9 C -0.11 -2.46 5.92 30.60 0.18 -2.28 16 10 C -0.12 -2.75 5.65 30.61 0.17 -2.58 16 11 C -0.08 -2.79 4.26 30.61 0.13 -2.66 16 12 N -0.57 -30.14 5.64 -178.77 -1.01 -31.15 16 13 H 0.42 21.87 5.98 -92.71 -0.55 21.32 16 14 C 0.16 9.22 6.74 38.88 0.26 9.48 16 15 C -0.47 -25.49 9.04 23.16 0.21 -25.28 16 16 H 0.09 4.88 7.37 -2.91 -0.02 4.85 16 17 C 0.03 1.27 5.49 85.28 0.47 1.74 16 18 N -0.87 -43.86 10.82 21.86 0.24 -43.62 16 19 Si 1.00 38.17 29.57 68.60 2.03 40.20 16 20 H -0.26 -9.55 7.11 99.48 0.71 -8.84 16 21 H -0.27 -9.96 7.11 99.48 0.71 -9.25 16 22 H -0.27 -9.67 7.11 99.48 0.71 -8.96 16 23 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 24 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 25 H 0.06 2.43 7.52 -2.39 -0.02 2.42 16 26 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.10 2.47 4.81 -2.39 -0.01 2.46 16 28 H 0.04 1.38 7.61 -2.39 -0.02 1.37 16 29 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 31 H 0.08 1.64 6.43 -2.39 -0.02 1.63 16 32 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.07 1.60 6.43 -2.39 -0.02 1.59 16 36 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.05 1.82 8.06 -2.38 -0.02 1.80 16 39 H 0.29 13.31 8.30 -92.71 -0.77 12.54 16 Total: -1.00 -62.90 301.48 4.12 -58.79 By element: Atomic # 1 Polarization: 38.00 SS G_CDS: 0.48 Total: 38.49 kcal Atomic # 6 Polarization: -38.51 SS G_CDS: 4.18 Total: -34.33 kcal Atomic # 7 Polarization: -100.57 SS G_CDS: -2.58 Total: -103.15 kcal Atomic # 14 Polarization: 38.17 SS G_CDS: 2.03 Total: 40.20 kcal Total: -62.90 4.12 -58.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260325700.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.386 kcal (2) G-P(sol) polarization free energy of solvation -62.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds