Wall clock time and date at job start Mon Mar 30 2020 05:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.36340 * 125.89534 * 2 1 4 4 H 0.97006 * 125.63427 * 0.04162 * 3 2 1 5 5 C 1.36344 * 108.73209 * 180.25797 * 3 2 1 6 6 C 1.50695 * 125.89063 * 179.75505 * 5 3 2 7 7 H 1.09009 * 110.62525 * 181.67710 * 6 5 3 8 8 C 1.55139 * 110.70678 * 304.96959 * 6 5 3 9 9 C 1.54912 * 101.65142 * 154.03854 * 8 6 5 10 10 N 1.47841 * 104.79572 * 322.93097 * 9 8 6 11 11 C 1.47445 * 108.56797 * 24.09895 * 10 9 8 12 12 C 1.34851 * 108.21468 * 359.77865 * 5 3 2 13 13 C 1.50705 * 126.28996 * 180.02562 * 12 5 3 14 14 C 1.34849 * 125.88909 * 179.87256 * 2 1 3 15 15 C 1.50701 * 126.29183 * 0.02562 * 14 2 1 16 16 C 1.50703 * 109.47064 * 269.69066 * 15 14 2 17 17 H 1.07996 * 119.99751 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00001 * 180.02562 * 16 15 14 19 19 N 1.31517 * 120.00094 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99955 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47116 * 59.99536 * 20 18 16 22 22 H 1.48500 * 109.46585 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.46730 * 299.99515 * 20 18 16 24 24 H 1.09002 * 109.46817 * 270.13395 * 1 2 3 25 25 H 1.09001 * 109.46994 * 30.12568 * 1 2 3 26 26 H 1.08997 * 109.47427 * 150.12420 * 1 2 3 27 27 H 1.08992 * 110.99438 * 272.13154 * 8 6 5 28 28 H 1.08996 * 110.99081 * 35.94969 * 8 6 5 29 29 H 1.09003 * 110.37186 * 204.10615 * 9 8 6 30 30 H 1.09001 * 110.37306 * 81.76257 * 9 8 6 31 31 H 1.00902 * 111.00004 * 146.36391 * 10 9 8 32 32 H 1.08996 * 109.88489 * 239.60298 * 11 10 9 33 33 H 1.09004 * 109.89104 * 118.41672 * 11 10 9 34 34 H 1.09000 * 109.46566 * 269.99691 * 13 12 5 35 35 H 1.09006 * 109.46865 * 29.99282 * 13 12 5 36 36 H 1.09000 * 109.47066 * 149.99893 * 13 12 5 37 37 H 1.09002 * 109.47060 * 29.69030 * 15 14 2 38 38 H 1.09001 * 109.47380 * 149.69118 * 15 14 2 39 39 H 0.97000 * 120.00333 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3064 1.1045 0.0000 4 1 1.9990 2.0246 0.0006 5 6 3.6091 0.7021 -0.0058 6 6 4.8134 1.6079 -0.0130 7 1 5.7331 1.0237 -0.0466 8 6 4.7460 2.6006 -1.2033 9 6 5.5950 3.7829 -0.6731 10 7 5.2736 3.8622 0.7678 11 6 4.8032 2.5391 1.2174 12 6 3.6338 -0.6461 -0.0045 13 6 4.8647 -1.5157 -0.0090 14 6 2.2975 -1.0925 0.0024 15 6 1.8363 -2.5272 0.0051 16 6 1.6894 -3.0050 1.4268 17 1 1.9085 -2.3367 2.2464 18 6 1.2763 -4.2956 1.6811 19 7 1.0100 -5.1096 0.6830 20 14 1.0935 -4.8876 3.4434 21 1 0.0933 -4.0454 4.1472 22 1 0.6392 -6.3014 3.4459 23 1 2.4022 -4.7865 4.1377 24 1 -0.3633 0.0024 1.0277 25 1 -0.3633 0.8889 -0.5158 26 1 -0.3634 -0.8911 -0.5119 27 1 5.1941 2.1685 -2.0980 28 1 3.7191 2.9121 -1.3943 29 1 5.3133 4.7080 -1.1762 30 1 6.6568 3.5811 -0.8145 31 1 6.0761 4.1612 1.3014 32 1 3.7907 2.6203 1.6126 33 1 5.4726 2.1484 1.9839 34 1 5.1569 -1.7264 -1.0377 35 1 5.6772 -0.9978 0.5007 36 1 4.6502 -2.4517 0.5068 37 1 0.8754 -2.6009 -0.5041 38 1 2.5700 -3.1457 -0.5121 39 1 0.7197 -6.0177 0.8619 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260442179.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:42:39 Heat of formation + Delta-G solvation = 2.493447 kcal Electronic energy + Delta-G solvation = -18245.463528 eV Core-core repulsion = 15572.580305 eV Total energy + Delta-G solvation = -2672.883223 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.23425 -39.12925 -35.45657 -33.82035 -33.28711 -30.94731 -29.91170 -29.87016 -27.91356 -25.78959 -24.49469 -22.22936 -21.89882 -19.78356 -19.54903 -18.36433 -17.80710 -17.50411 -16.44283 -15.99939 -15.53403 -14.79812 -14.46066 -14.27975 -14.01774 -13.86311 -13.72584 -13.60793 -13.44109 -13.16234 -13.02699 -13.02153 -12.80400 -12.53893 -12.49069 -12.25718 -12.18565 -11.77179 -11.69502 -11.48504 -11.33959 -10.51093 -9.42048 -9.07354 -8.45204 -8.06919 -6.21703 1.38991 1.42627 1.43804 1.50816 2.18164 2.48933 2.54351 3.18738 3.29557 3.71863 3.82214 3.93711 4.28183 4.35041 4.38690 4.42929 4.53636 4.61282 4.68935 4.76233 4.83070 4.90361 4.97034 5.01572 5.07190 5.07723 5.17166 5.19724 5.25867 5.42100 5.48093 5.70439 5.82685 5.88494 5.92312 6.26457 6.43937 6.47063 6.54588 6.90457 7.02427 7.45546 8.98287 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.031449 B = 0.005434 C = 0.005241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.111958 B = 5151.680438 C = 5340.835238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.008 4.008 3 N -0.542 5.542 4 H 0.418 0.582 5 C 0.029 3.971 6 C -0.032 4.032 7 H 0.100 0.900 8 C -0.120 4.120 9 C 0.049 3.951 10 N -0.691 5.691 11 C 0.055 3.945 12 C -0.190 4.190 13 C -0.067 4.067 14 C -0.155 4.155 15 C 0.098 3.902 16 C -0.511 4.511 17 H 0.045 0.955 18 C 0.004 3.996 19 N -0.933 5.933 20 Si 0.958 3.042 21 H -0.269 1.269 22 H -0.280 1.280 23 H -0.271 1.271 24 H 0.063 0.937 25 H 0.084 0.916 26 H 0.059 0.941 27 H 0.084 0.916 28 H 0.065 0.935 29 H 0.088 0.912 30 H 0.060 0.940 31 H 0.350 0.650 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.057 0.943 35 H 0.073 0.927 36 H 0.036 0.964 37 H -0.006 1.006 38 H -0.012 1.012 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.288 18.026 -1.936 19.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.119 4.119 3 N -0.140 5.140 4 H 0.257 0.743 5 C -0.084 4.084 6 C -0.052 4.052 7 H 0.118 0.882 8 C -0.159 4.159 9 C -0.080 4.080 10 N -0.321 5.321 11 C -0.075 4.075 12 C -0.197 4.197 13 C -0.125 4.125 14 C -0.161 4.161 15 C 0.060 3.940 16 C -0.550 4.550 17 H 0.063 0.937 18 C -0.194 4.194 19 N -0.574 5.574 20 Si 0.783 3.217 21 H -0.194 1.194 22 H -0.206 1.206 23 H -0.196 1.196 24 H 0.082 0.918 25 H 0.103 0.897 26 H 0.078 0.922 27 H 0.102 0.898 28 H 0.084 0.916 29 H 0.106 0.894 30 H 0.078 0.922 31 H 0.167 0.833 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.091 0.909 36 H 0.055 0.945 37 H 0.013 0.987 38 H 0.007 0.993 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 7.523 18.304 -2.048 19.895 hybrid contribution 0.275 -1.198 0.789 1.461 sum 7.799 17.106 -1.258 18.842 Atomic orbital electron populations 1.20132 0.87494 1.02653 1.02215 1.20160 0.93877 0.85830 1.12047 1.41437 1.04893 1.07601 1.60020 0.74338 1.19748 0.85092 0.92670 1.10856 1.20925 0.93731 0.94202 0.96317 0.88203 1.22777 1.00919 0.94761 0.97416 1.22874 0.98442 0.98526 0.88134 1.61853 1.39525 1.26196 1.04530 1.22584 1.00951 0.87766 0.96152 1.19452 0.94767 0.93256 1.12249 1.19997 0.93980 0.97720 1.00788 1.19793 0.93485 0.95264 1.07547 1.17303 0.93549 0.87922 0.95204 1.21333 1.43981 0.96838 0.92820 0.93697 1.25863 0.95316 0.96928 1.01258 1.70083 1.47520 1.06935 1.32877 0.85608 0.78752 0.77284 0.80042 1.19399 1.20570 1.19633 0.91803 0.89748 0.92183 0.89755 0.91637 0.89403 0.92191 0.83338 0.92311 0.92033 0.92429 0.90863 0.94510 0.98732 0.99341 0.92863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.33 10.21 71.24 0.73 -1.61 16 2 C -0.01 -0.32 7.16 41.08 0.29 -0.02 16 3 N -0.54 -17.23 5.78 -171.12 -0.99 -18.22 16 4 H 0.42 10.42 8.91 -92.70 -0.83 9.59 16 5 C 0.03 0.96 5.67 41.08 0.23 1.19 16 6 C -0.03 -0.74 3.31 -10.36 -0.03 -0.78 16 7 H 0.10 2.26 6.90 -2.38 -0.02 2.24 16 8 C -0.12 -2.30 6.51 31.98 0.21 -2.10 16 9 C 0.05 0.74 7.57 86.78 0.66 1.40 16 10 N -0.69 -12.05 7.39 -504.43 -3.73 -15.78 16 11 C 0.06 1.18 7.17 86.64 0.62 1.80 16 12 C -0.19 -7.82 6.14 -19.99 -0.12 -7.94 16 13 C -0.07 -2.54 9.76 71.24 0.70 -1.84 16 14 C -0.15 -7.36 5.33 -19.99 -0.11 -7.46 16 15 C 0.10 5.57 5.00 29.10 0.15 5.72 16 16 C -0.51 -30.63 9.09 25.60 0.23 -30.40 16 17 H 0.04 2.69 7.74 -2.91 -0.02 2.67 16 18 C 0.00 0.21 5.46 84.65 0.46 0.67 16 19 N -0.93 -58.16 13.29 21.45 0.28 -57.88 16 20 Si 0.96 45.90 29.54 68.60 2.03 47.93 16 21 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 22 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 23 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 24 H 0.06 2.19 8.14 -2.39 -0.02 2.18 16 25 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 26 H 0.06 2.32 7.13 -2.39 -0.02 2.31 16 27 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.06 1.33 7.85 -2.39 -0.02 1.32 16 29 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.35 4.77 8.91 -89.69 -0.80 3.98 16 32 H 0.06 1.46 7.70 -2.39 -0.02 1.44 16 33 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.07 2.23 7.19 -2.38 -0.02 2.21 16 36 H 0.04 1.61 8.03 -2.39 -0.02 1.59 16 37 H -0.01 -0.33 7.13 -2.39 -0.02 -0.35 16 38 H -0.01 -0.73 8.03 -2.39 -0.02 -0.75 16 39 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -70.43 316.51 1.03 -69.40 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: -0.58 Total: 15.91 kcal Atomic # 6 Polarization: -45.38 SS G_CDS: 4.01 Total: -41.37 kcal Atomic # 7 Polarization: -87.44 SS G_CDS: -4.43 Total: -91.88 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Total: -70.43 1.03 -69.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260442179.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.898 kcal (2) G-P(sol) polarization free energy of solvation -70.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds