Wall clock time and date at job start Mon Mar 30 2020 06:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47182 * 2 1 4 4 C 1.50698 * 109.47267 * 119.99612 * 2 1 3 5 5 C 1.35459 * 126.11712 * 126.16203 * 4 2 1 6 6 C 1.39850 * 107.91737 * 179.97438 * 5 4 2 7 7 N 1.31040 * 108.12859 * 359.96842 * 6 5 4 8 8 N 1.34891 * 126.11052 * 306.14332 * 4 2 1 9 9 C 1.46488 * 126.03649 * 0.05080 * 8 4 2 10 10 C 1.51321 * 109.51173 * 179.97438 * 6 5 4 11 11 C 1.54343 * 105.22060 * 342.77152 * 10 6 5 12 12 H 1.09010 * 110.76782 * 144.83124 * 11 10 6 13 13 C 1.52991 * 110.77221 * 268.23581 * 11 10 6 14 14 C 1.51288 * 142.52520 * 359.94913 * 5 4 2 15 15 H 1.09000 * 110.37568 * 78.27934 * 14 5 4 16 16 C 1.50694 * 110.29698 * 316.18860 * 14 5 4 17 17 H 1.08003 * 120.00551 * 329.12767 * 16 14 5 18 18 C 1.37883 * 119.99972 * 149.12261 * 16 14 5 19 19 N 1.31512 * 120.00185 * 173.23787 * 18 16 14 20 20 Si 1.86801 * 119.99974 * 353.51043 * 18 16 14 21 21 H 1.48500 * 109.47354 * 274.65940 * 20 18 16 22 22 H 1.48509 * 109.46943 * 34.65825 * 20 18 16 23 23 H 1.48494 * 109.47112 * 154.65614 * 20 18 16 24 24 H 1.08997 * 109.47213 * 300.00283 * 1 2 3 25 25 H 1.09000 * 109.46580 * 60.00336 * 1 2 3 26 26 H 1.09000 * 109.46716 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47213 * 239.99717 * 2 1 3 28 28 H 1.08993 * 109.47236 * 185.93736 * 3 2 1 29 29 H 1.09008 * 109.46609 * 305.93320 * 3 2 1 30 30 H 1.08993 * 109.47526 * 65.92531 * 3 2 1 31 31 H 1.09002 * 109.47637 * 94.77000 * 9 8 4 32 32 H 1.09007 * 109.47823 * 214.77336 * 9 8 4 33 33 H 1.09006 * 109.47339 * 334.77428 * 9 8 4 34 34 H 1.09002 * 110.29711 * 223.84130 * 10 6 5 35 35 H 1.09000 * 110.37590 * 101.74790 * 10 6 5 36 36 H 1.09003 * 109.47736 * 179.37318 * 13 11 10 37 37 H 1.08999 * 109.47679 * 299.37667 * 13 11 10 38 38 H 1.09008 * 109.47116 * 59.37368 * 13 11 10 39 39 H 0.96995 * 120.00135 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7103 1.2305 5 6 2.9073 -1.7442 1.2543 6 6 3.1077 -2.1075 2.5899 7 7 2.3789 -1.3187 3.3408 8 7 1.6914 -0.4300 2.5051 9 6 0.7656 0.6191 2.9387 10 6 4.0817 -3.2635 2.6585 11 6 4.1149 -3.8507 1.2315 12 1 5.1144 -4.2084 0.9839 13 6 3.0836 -4.9707 1.0815 14 6 3.7362 -2.6366 0.3569 15 1 4.6337 -2.1139 0.0262 16 6 2.9238 -3.0820 -0.8316 17 1 1.8554 -3.2092 -0.7385 18 6 3.5446 -3.3270 -2.0382 19 7 2.8610 -3.8419 -3.0368 20 14 5.3584 -2.9348 -2.2520 21 1 5.5149 -1.5077 -2.6316 22 1 6.0736 -3.1887 -0.9755 23 1 5.9287 -3.7962 -3.3187 24 1 -0.3633 0.5139 0.8899 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 3.1248 1.4443 -0.1063 29 1 1.5925 1.9860 -0.8322 30 1 1.7660 1.9248 0.9382 31 1 -0.2307 0.1953 3.0648 32 1 1.1060 1.0352 3.8870 33 1 0.7322 1.4078 2.1870 34 1 3.7298 -4.0130 3.3674 35 1 5.0720 -2.9089 2.9445 36 1 3.1173 -5.3620 0.0646 37 1 3.3106 -5.7706 1.7862 38 1 2.0878 -4.5775 1.2866 39 1 3.2976 -4.0139 -3.8857 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260443590.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:59 Heat of formation + Delta-G solvation = 68.462591 kcal Electronic energy + Delta-G solvation = -19195.851284 eV Core-core repulsion = 16525.828697 eV Total energy + Delta-G solvation = -2670.022586 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.96957 -36.83640 -34.95255 -32.39377 -31.60657 -29.44406 -27.65211 -27.20078 -26.87947 -24.44689 -23.03217 -21.61916 -19.56807 -18.94522 -17.86044 -16.58870 -15.30241 -15.04579 -14.88972 -14.05233 -13.89632 -13.78200 -13.05453 -12.96234 -12.91852 -12.43373 -12.25121 -11.99879 -11.94724 -11.77793 -11.70028 -10.94307 -10.85493 -10.79948 -10.54769 -10.37489 -10.20785 -10.07471 -9.82791 -9.65661 -9.18417 -9.03991 -8.48766 -8.34906 -7.25737 -6.02039 -3.96657 2.55151 3.04706 3.31571 3.40464 3.42395 3.61012 4.46739 4.71914 5.02489 5.23873 5.25049 5.35283 5.37003 5.54111 5.55483 5.68218 5.81193 5.88883 5.93676 6.02229 6.07423 6.15364 6.29315 6.32662 6.39025 6.57430 6.60489 6.65081 6.69497 6.92965 6.94711 7.15545 7.30029 7.31063 7.44944 7.53155 7.82790 7.83547 8.50059 8.63724 9.05075 9.61769 11.10863 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.020080 B = 0.010251 C = 0.008036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.066429 B = 2730.749456 C = 3483.697734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.032 4.032 3 C -0.146 4.146 4 C 0.096 3.904 5 C -0.201 4.201 6 C 0.040 3.960 7 N -0.302 5.302 8 N -0.384 5.384 9 C 0.105 3.895 10 C -0.027 4.027 11 C -0.089 4.089 12 H 0.067 0.933 13 C -0.112 4.112 14 C 0.085 3.915 15 H 0.039 0.961 16 C -0.486 4.486 17 H 0.074 0.926 18 C 0.071 3.929 19 N -0.901 5.901 20 Si 0.868 3.132 21 H -0.278 1.278 22 H -0.264 1.264 23 H -0.291 1.291 24 H 0.047 0.953 25 H 0.058 0.942 26 H 0.060 0.940 27 H 0.115 0.885 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.047 0.953 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.024 0.976 38 H 0.046 0.954 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.477 7.512 7.587 10.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.052 4.052 3 C -0.203 4.203 4 C -0.028 4.028 5 C -0.212 4.212 6 C -0.126 4.126 7 N -0.123 5.123 8 N -0.167 5.167 9 C -0.036 4.036 10 C -0.066 4.066 11 C -0.108 4.108 12 H 0.086 0.914 13 C -0.169 4.169 14 C 0.065 3.935 15 H 0.057 0.943 16 C -0.524 4.524 17 H 0.092 0.908 18 C -0.130 4.130 19 N -0.539 5.539 20 Si 0.696 3.304 21 H -0.204 1.204 22 H -0.189 1.189 23 H -0.218 1.218 24 H 0.066 0.934 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.133 0.867 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.106 0.894 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.043 0.957 38 H 0.065 0.935 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.926 7.864 8.631 11.834 hybrid contribution 1.041 0.135 -0.937 1.407 sum -0.885 7.999 7.693 11.133 Atomic orbital electron populations 1.21922 0.95002 1.02415 1.01062 1.19832 0.95199 0.94828 0.95372 1.21919 1.01734 0.95714 1.00955 1.19960 0.98633 0.98335 0.85898 1.21061 1.04105 0.99975 0.96050 1.23230 0.97735 0.97687 0.93968 1.76874 1.13185 1.05990 1.16285 1.48224 1.37059 1.28053 1.03413 1.21823 0.91656 0.88674 1.01483 1.20664 0.94704 0.91893 0.99335 1.22127 0.98868 0.97692 0.92162 0.91446 1.21490 0.98376 0.95652 1.01393 1.18220 0.93405 0.88981 0.92859 0.94313 1.20822 0.95662 1.43803 0.92119 0.90811 1.25019 0.97178 0.94770 0.96066 1.69906 1.36579 1.43908 1.03532 0.87001 0.86948 0.78546 0.77951 1.20388 1.18896 1.21775 0.93391 0.92266 0.92088 0.86659 0.92343 0.92172 0.93405 0.91719 0.90484 0.89416 0.91455 0.90943 0.91001 0.95706 0.93528 0.92851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 8.98 37.16 0.33 -1.85 16 2 C -0.03 -0.56 3.08 -91.77 -0.28 -0.84 16 3 C -0.15 -2.07 9.07 37.16 0.34 -1.73 16 4 C 0.10 1.90 5.58 -82.24 -0.46 1.44 16 5 C -0.20 -4.47 6.06 -104.72 -0.63 -5.10 16 6 C 0.04 0.85 8.10 -82.02 -0.66 0.18 16 7 N -0.30 -6.24 12.58 33.85 0.43 -5.82 16 8 N -0.38 -7.06 4.01 -63.87 -0.26 -7.31 16 9 C 0.11 1.37 9.71 59.84 0.58 1.95 16 10 C -0.03 -0.49 6.30 -26.87 -0.17 -0.66 16 11 C -0.09 -1.84 3.54 -89.21 -0.32 -2.15 16 12 H 0.07 1.34 8.14 -51.92 -0.42 0.91 16 13 C -0.11 -2.31 8.13 37.15 0.30 -2.01 16 14 C 0.09 1.98 2.34 -91.93 -0.21 1.77 16 15 H 0.04 0.93 5.40 -51.93 -0.28 0.65 16 16 C -0.49 -12.76 6.26 -34.44 -0.22 -12.98 16 17 H 0.07 2.16 8.06 -52.48 -0.42 1.74 16 18 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 19 N -0.90 -26.24 13.96 55.43 0.77 -25.47 16 20 Si 0.87 20.77 27.05 -169.99 -4.60 16.17 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 22 H -0.26 -6.04 6.77 56.52 0.38 -5.66 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H 0.05 0.60 5.33 -51.93 -0.28 0.33 16 25 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 27 H 0.12 2.37 7.52 -51.93 -0.39 1.98 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.06 0.74 8.14 -51.92 -0.42 0.31 16 30 H 0.05 0.60 5.64 -51.93 -0.29 0.31 16 31 H 0.06 0.76 8.01 -51.93 -0.42 0.35 16 32 H 0.08 0.89 8.14 -51.92 -0.42 0.47 16 33 H 0.09 0.97 4.38 -51.93 -0.23 0.74 16 34 H 0.07 1.14 7.91 -51.93 -0.41 0.73 16 35 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.07 1.63 7.33 -51.93 -0.38 1.25 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.05 1.02 8.10 -51.92 -0.42 0.60 16 39 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 302.30 15.07 4.56 4.56 Total: -1.00 -30.38 302.30 -6.65 -37.04 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -6.05 Total: 1.00 kcal Atomic # 6 Polarization: -18.67 SS G_CDS: -1.50 Total: -20.17 kcal Atomic # 7 Polarization: -39.54 SS G_CDS: 0.94 Total: -38.60 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -4.60 Total: 16.17 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.38 -6.65 -37.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260443590.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.498 kcal (2) G-P(sol) polarization free energy of solvation -30.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds