Wall clock time and date at job start Mon Mar 30 2020 06:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47182 * 2 1 4 4 C 1.50698 * 109.47267 * 119.99612 * 2 1 3 5 5 C 1.35459 * 126.11712 * 126.16203 * 4 2 1 6 6 C 1.39850 * 107.91737 * 179.97438 * 5 4 2 7 7 N 1.31040 * 108.12859 * 359.96842 * 6 5 4 8 8 N 1.34891 * 126.11052 * 306.14332 * 4 2 1 9 9 C 1.46488 * 126.03649 * 0.05080 * 8 4 2 10 10 C 1.51321 * 109.51173 * 179.97438 * 6 5 4 11 11 C 1.54343 * 105.22060 * 342.77152 * 10 6 5 12 12 H 1.09010 * 110.76782 * 144.83124 * 11 10 6 13 13 C 1.52991 * 110.77221 * 268.23581 * 11 10 6 14 14 C 1.51288 * 142.52520 * 359.94913 * 5 4 2 15 15 H 1.09000 * 110.37568 * 78.27934 * 14 5 4 16 16 C 1.50694 * 110.29698 * 316.18860 * 14 5 4 17 17 H 1.08003 * 120.00551 * 329.12767 * 16 14 5 18 18 C 1.37883 * 119.99972 * 149.12261 * 16 14 5 19 19 N 1.31512 * 120.00185 * 173.23787 * 18 16 14 20 20 Si 1.86801 * 119.99974 * 353.51043 * 18 16 14 21 21 H 1.48500 * 109.47354 * 274.65940 * 20 18 16 22 22 H 1.48509 * 109.46943 * 34.65825 * 20 18 16 23 23 H 1.48494 * 109.47112 * 154.65614 * 20 18 16 24 24 H 1.08997 * 109.47213 * 300.00283 * 1 2 3 25 25 H 1.09000 * 109.46580 * 60.00336 * 1 2 3 26 26 H 1.09000 * 109.46716 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47213 * 239.99717 * 2 1 3 28 28 H 1.08993 * 109.47236 * 185.93736 * 3 2 1 29 29 H 1.09008 * 109.46609 * 305.93320 * 3 2 1 30 30 H 1.08993 * 109.47526 * 65.92531 * 3 2 1 31 31 H 1.09002 * 109.47637 * 94.77000 * 9 8 4 32 32 H 1.09007 * 109.47823 * 214.77336 * 9 8 4 33 33 H 1.09006 * 109.47339 * 334.77428 * 9 8 4 34 34 H 1.09002 * 110.29711 * 223.84130 * 10 6 5 35 35 H 1.09000 * 110.37590 * 101.74790 * 10 6 5 36 36 H 1.09003 * 109.47736 * 179.37318 * 13 11 10 37 37 H 1.08999 * 109.47679 * 299.37667 * 13 11 10 38 38 H 1.09008 * 109.47116 * 59.37368 * 13 11 10 39 39 H 0.96995 * 120.00135 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7103 1.2305 5 6 2.9073 -1.7442 1.2543 6 6 3.1077 -2.1075 2.5899 7 7 2.3789 -1.3187 3.3408 8 7 1.6914 -0.4300 2.5051 9 6 0.7656 0.6191 2.9387 10 6 4.0817 -3.2635 2.6585 11 6 4.1149 -3.8507 1.2315 12 1 5.1144 -4.2084 0.9839 13 6 3.0836 -4.9707 1.0815 14 6 3.7362 -2.6366 0.3569 15 1 4.6337 -2.1139 0.0262 16 6 2.9238 -3.0820 -0.8316 17 1 1.8554 -3.2092 -0.7385 18 6 3.5446 -3.3270 -2.0382 19 7 2.8610 -3.8419 -3.0368 20 14 5.3584 -2.9348 -2.2520 21 1 5.5149 -1.5077 -2.6316 22 1 6.0736 -3.1887 -0.9755 23 1 5.9287 -3.7962 -3.3187 24 1 -0.3633 0.5139 0.8899 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 3.1248 1.4443 -0.1063 29 1 1.5925 1.9860 -0.8322 30 1 1.7660 1.9248 0.9382 31 1 -0.2307 0.1953 3.0648 32 1 1.1060 1.0352 3.8870 33 1 0.7322 1.4078 2.1870 34 1 3.7298 -4.0130 3.3674 35 1 5.0720 -2.9089 2.9445 36 1 3.1173 -5.3620 0.0646 37 1 3.3106 -5.7706 1.7862 38 1 2.0878 -4.5775 1.2866 39 1 3.2976 -4.0139 -3.8857 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260443590.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:58 Heat of formation + Delta-G solvation = 50.385394 kcal Electronic energy + Delta-G solvation = -19196.635170 eV Core-core repulsion = 16525.828697 eV Total energy + Delta-G solvation = -2670.806472 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.49349 -38.42758 -36.37520 -34.36571 -33.04530 -31.08007 -29.20046 -28.89468 -28.06479 -25.92263 -24.84606 -23.04802 -21.13974 -20.51635 -19.50035 -18.56309 -16.78647 -16.51199 -16.37744 -15.81438 -15.27029 -15.26757 -14.77911 -14.44840 -14.24502 -14.01202 -13.75227 -13.47261 -13.41378 -13.18427 -12.92442 -12.78879 -12.49068 -12.20652 -12.03593 -11.96944 -11.86577 -11.65742 -11.58486 -11.29295 -10.99769 -10.84510 -10.58115 -9.82086 -8.86636 -8.14819 -6.11741 1.03511 1.39793 1.42513 1.51806 1.71183 1.99016 2.44524 3.19807 3.30135 3.68608 3.99390 4.10205 4.15392 4.22965 4.35246 4.41339 4.49321 4.55473 4.62733 4.70254 4.72526 4.82573 4.88683 4.90052 4.95713 5.06235 5.14389 5.19069 5.29045 5.34041 5.36890 5.46347 5.59176 5.67024 5.72888 5.84958 5.91549 6.36477 6.52224 6.88341 6.95443 7.48638 9.01760 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.020080 B = 0.010251 C = 0.008036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.066429 B = 2730.749456 C = 3483.697734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.034 4.034 3 C -0.138 4.138 4 C 0.099 3.901 5 C -0.251 4.251 6 C 0.031 3.969 7 N -0.317 5.317 8 N -0.376 5.376 9 C 0.091 3.909 10 C -0.019 4.019 11 C -0.090 4.090 12 H 0.081 0.919 13 C -0.102 4.102 14 C 0.082 3.918 15 H 0.032 0.968 16 C -0.466 4.466 17 H 0.026 0.974 18 C 0.017 3.983 19 N -0.950 5.950 20 Si 0.925 3.075 21 H -0.274 1.274 22 H -0.242 1.242 23 H -0.293 1.293 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.030 0.970 27 H 0.072 0.928 28 H 0.044 0.956 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.111 0.889 34 H 0.087 0.913 35 H 0.097 0.903 36 H 0.040 0.960 37 H 0.060 0.940 38 H 0.022 0.978 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.800 9.252 9.533 13.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.054 4.054 3 C -0.195 4.195 4 C -0.028 4.028 5 C -0.262 4.262 6 C -0.135 4.135 7 N -0.140 5.140 8 N -0.160 5.160 9 C -0.049 4.049 10 C -0.058 4.058 11 C -0.109 4.109 12 H 0.099 0.901 13 C -0.159 4.159 14 C 0.062 3.938 15 H 0.050 0.950 16 C -0.504 4.504 17 H 0.044 0.956 18 C -0.179 4.179 19 N -0.591 5.591 20 Si 0.750 3.250 21 H -0.200 1.200 22 H -0.166 1.166 23 H -0.219 1.219 24 H 0.096 0.904 25 H 0.097 0.903 26 H 0.049 0.951 27 H 0.090 0.910 28 H 0.064 0.936 29 H 0.101 0.899 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.114 0.886 33 H 0.129 0.871 34 H 0.105 0.895 35 H 0.115 0.885 36 H 0.059 0.941 37 H 0.079 0.921 38 H 0.041 0.959 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.255 9.620 10.622 14.385 hybrid contribution 0.660 -0.350 -1.513 1.687 sum -0.595 9.270 9.109 13.010 Atomic orbital electron populations 1.21887 0.93061 1.01264 1.03566 1.19827 0.96807 0.96279 0.92529 1.21870 1.00948 0.93477 1.03245 1.20338 0.97522 0.97628 0.87268 1.21179 1.06470 1.01947 0.96611 1.23570 0.98226 0.98371 0.93311 1.76790 1.13635 1.06602 1.16949 1.48570 1.36719 1.28132 1.02558 1.22296 0.91344 0.88005 1.03206 1.20652 0.95609 0.91590 0.97944 1.22087 0.99151 0.96384 0.93309 0.90117 1.21358 0.97351 0.96750 1.00455 1.18188 0.92853 0.90456 0.92264 0.94990 1.20790 0.93680 1.42339 0.93587 0.95558 1.25718 1.01516 0.94973 0.95735 1.70053 1.38571 1.46274 1.04195 0.86061 0.81974 0.78265 0.78652 1.19989 1.16570 1.21926 0.90383 0.90259 0.95056 0.91001 0.93642 0.89865 0.91031 0.90151 0.88551 0.87063 0.89495 0.88491 0.94075 0.92069 0.95914 0.93016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.03 8.98 71.98 0.65 -3.39 16 2 C -0.03 -1.17 3.08 -11.54 -0.04 -1.20 16 3 C -0.14 -3.61 9.07 71.98 0.65 -2.96 16 4 C 0.10 3.88 5.58 41.45 0.23 4.11 16 5 C -0.25 -11.21 6.06 -19.93 -0.12 -11.33 16 6 C 0.03 1.26 8.10 43.26 0.35 1.61 16 7 N -0.32 -12.60 12.58 -46.80 -0.59 -13.19 16 8 N -0.38 -13.13 4.01 -355.97 -1.43 -14.56 16 9 C 0.09 2.04 9.71 127.77 1.24 3.28 16 10 C -0.02 -0.66 6.30 30.50 0.19 -0.47 16 11 C -0.09 -3.63 3.54 -9.88 -0.03 -3.67 16 12 H 0.08 3.03 8.14 -2.38 -0.02 3.01 16 13 C -0.10 -4.23 8.13 71.98 0.59 -3.65 16 14 C 0.08 3.87 2.34 -11.64 -0.03 3.84 16 15 H 0.03 1.53 5.40 -2.39 -0.01 1.51 16 16 C -0.47 -25.63 6.26 25.60 0.16 -25.47 16 17 H 0.03 1.65 8.06 -2.91 -0.02 1.63 16 18 C 0.02 0.94 5.47 84.66 0.46 1.40 16 19 N -0.95 -57.97 13.96 21.45 0.30 -57.67 16 20 Si 0.93 43.37 27.05 68.60 1.86 45.23 16 21 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 22 H -0.24 -10.40 6.77 99.48 0.67 -9.73 16 23 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 24 H 0.08 1.74 5.33 -2.39 -0.01 1.73 16 25 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 26 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.07 3.10 7.52 -2.39 -0.02 3.08 16 28 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.08 1.79 8.14 -2.38 -0.02 1.78 16 30 H 0.07 1.52 5.64 -2.39 -0.01 1.50 16 31 H 0.08 1.61 8.01 -2.39 -0.02 1.59 16 32 H 0.10 1.85 8.14 -2.38 -0.02 1.83 16 33 H 0.11 1.96 4.38 -2.38 -0.01 1.95 16 34 H 0.09 2.70 7.91 -2.39 -0.02 2.68 16 35 H 0.10 2.93 8.14 -2.39 -0.02 2.91 16 36 H 0.04 1.92 7.33 -2.39 -0.02 1.90 16 37 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.02 1.00 8.10 -2.38 -0.02 0.99 16 39 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 Total: -1.00 -69.43 302.30 5.44 -63.99 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: 1.00 Total: 14.08 kcal Atomic # 6 Polarization: -42.18 SS G_CDS: 4.30 Total: -37.88 kcal Atomic # 7 Polarization: -83.70 SS G_CDS: -1.72 Total: -85.42 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 1.86 Total: 45.23 kcal Total: -69.43 5.44 -63.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260443590.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.374 kcal (2) G-P(sol) polarization free energy of solvation -69.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds