Wall clock time and date at job start Mon Mar 30 2020 05:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50704 * 109.47182 * 2 1 4 4 C 1.38307 * 119.92032 * 90.00363 * 3 2 1 5 5 C 1.38083 * 120.07269 * 180.02562 * 4 3 2 6 6 C 1.38935 * 119.92736 * 359.97239 * 5 4 3 7 7 N 1.39675 * 120.07375 * 179.97438 * 6 5 4 8 8 C 1.46901 * 110.99733 * 60.00735 * 7 6 5 9 9 C 1.46898 * 111.00076 * 296.04910 * 7 6 5 10 10 C 1.38888 * 119.84765 * 0.25843 * 6 5 4 11 11 C 1.50700 * 120.03678 * 179.72085 * 10 6 5 12 12 H 1.08999 * 109.47055 * 325.00275 * 11 10 6 13 13 N 1.46896 * 109.47151 * 204.99776 * 11 10 6 14 14 C 1.50700 * 109.46603 * 85.00294 * 11 10 6 15 15 H 1.08000 * 120.00279 * 359.97438 * 14 11 10 16 16 C 1.37877 * 119.99683 * 180.02562 * 14 11 10 17 17 N 1.31513 * 120.00234 * 359.97438 * 16 14 11 18 18 Si 1.86802 * 119.99981 * 179.97438 * 16 14 11 19 19 H 1.48506 * 109.47269 * 89.99682 * 18 16 14 20 20 H 1.48502 * 109.46886 * 209.99535 * 18 16 14 21 21 H 1.48501 * 109.47024 * 329.99492 * 18 16 14 22 22 C 1.38131 * 119.92307 * 359.51272 * 10 6 5 23 23 H 1.08999 * 109.46931 * 299.99687 * 1 2 3 24 24 H 1.09001 * 109.47009 * 59.99533 * 1 2 3 25 25 H 1.09003 * 109.47052 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46786 * 240.00806 * 2 1 3 27 27 H 1.08994 * 109.47844 * 120.00472 * 2 1 3 28 28 H 1.07998 * 119.96686 * 359.97438 * 4 3 2 29 29 H 1.08004 * 120.03462 * 179.97438 * 5 4 3 30 30 H 1.09002 * 109.47401 * 59.99521 * 8 7 6 31 31 H 1.09001 * 109.46874 * 299.99534 * 8 7 6 32 32 H 1.09004 * 109.46970 * 179.97438 * 8 7 6 33 33 H 1.09006 * 109.46770 * 179.97438 * 9 7 6 34 34 H 1.09001 * 109.47456 * 300.00035 * 9 7 6 35 35 H 1.09000 * 109.46814 * 60.00340 * 9 7 6 36 36 H 1.00903 * 110.99800 * 176.04894 * 13 11 10 37 37 H 1.00904 * 111.00508 * 300.00332 * 13 11 10 38 38 H 0.96996 * 120.00344 * 180.02562 * 17 16 14 39 39 H 1.07998 * 119.96150 * 180.22909 * 22 10 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2624 2.0712 1.1987 5 6 2.7222 3.3733 1.2024 6 6 2.9542 4.0298 0.0002 7 7 3.4188 5.3470 0.0003 8 6 4.7138 5.4484 0.6864 9 6 2.4317 6.2533 0.6021 10 6 2.7176 3.3753 -1.2018 11 6 2.9619 4.0855 -2.5083 12 1 2.7096 5.1404 -2.4011 13 7 2.1247 3.4856 -3.5557 14 6 4.4141 3.9523 -2.8884 15 1 5.0923 3.4083 -2.2477 16 6 4.8771 4.5260 -4.0535 17 7 4.0513 5.1890 -4.8334 18 14 6.6773 4.3617 -4.5244 19 1 6.8646 3.1383 -5.3451 20 1 7.0946 5.5521 -5.3079 21 1 7.5037 4.2640 -3.2944 22 6 2.2622 2.0712 -1.1982 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5137 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 2.0814 1.5605 2.1330 29 1 2.9012 3.8807 2.1388 30 1 5.4448 4.8199 0.1777 31 1 4.6049 5.1161 1.7188 32 1 5.0527 6.4843 0.6716 33 1 2.8191 7.2722 0.5898 34 1 1.5037 6.2101 0.0320 35 1 2.2403 5.9502 1.6314 36 1 2.2221 3.9854 -4.4268 37 1 2.3397 2.5069 -3.6743 38 1 4.3769 5.5922 -5.6533 39 1 2.0815 1.5604 -2.1325 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260461479.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:48 Heat of formation + Delta-G solvation = 24.100596 kcal Electronic energy + Delta-G solvation = -18643.786692 eV Core-core repulsion = 15971.840426 eV Total energy + Delta-G solvation = -2671.946267 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 248.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.47801 -36.47496 -34.81710 -32.75630 -31.44860 -29.10718 -28.37579 -27.09843 -25.83112 -24.34286 -22.96617 -22.17511 -20.28692 -19.10166 -16.38154 -16.35411 -15.49624 -14.86628 -14.43584 -14.37628 -13.92199 -13.71792 -13.42896 -13.15689 -12.80095 -12.65693 -12.21752 -11.99150 -11.95918 -11.41500 -11.33604 -11.21775 -11.15809 -10.93515 -10.87798 -10.73146 -10.51773 -10.22364 -9.89822 -9.48354 -8.55074 -8.01136 -7.81350 -7.65022 -7.07266 -5.95661 -4.08665 1.95594 2.18839 3.28064 3.35478 3.39463 4.34915 4.49479 4.51216 5.17083 5.24172 5.27036 5.51901 5.55237 5.62670 5.68953 5.70396 5.86517 5.88740 5.94671 6.01804 6.04153 6.16281 6.24831 6.37598 6.40212 6.44204 6.52004 6.74904 6.82349 7.01110 7.19066 7.31930 7.50633 7.62969 7.85924 7.91521 8.20665 8.25317 8.82323 9.06053 9.22511 9.59671 11.02750 Molecular weight = 248.16amu Principal moments of inertia in cm(-1) A = 0.018655 B = 0.008326 C = 0.006765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.604862 B = 3362.278911 C = 4138.042902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.080 4.080 3 C -0.093 4.093 4 C -0.138 4.138 5 C -0.152 4.152 6 C 0.076 3.924 7 N -0.488 5.488 8 C 0.037 3.963 9 C 0.033 3.967 10 C 0.000 4.000 11 C 0.248 3.752 12 H 0.063 0.937 13 N -0.855 5.855 14 C -0.520 4.520 15 H 0.049 0.951 16 C 0.065 3.935 17 N -0.896 5.896 18 Si 0.892 3.108 19 H -0.283 1.283 20 H -0.287 1.287 21 H -0.275 1.275 22 C -0.106 4.106 23 H 0.051 0.949 24 H 0.058 0.942 25 H 0.050 0.950 26 H 0.068 0.932 27 H 0.062 0.938 28 H 0.107 0.893 29 H 0.106 0.894 30 H 0.072 0.928 31 H 0.017 0.983 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.019 0.981 36 H 0.355 0.645 37 H 0.307 0.693 38 H 0.262 0.738 39 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.647 -4.489 10.200 11.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.117 4.117 3 C -0.093 4.093 4 C -0.157 4.157 5 C -0.173 4.173 6 C -0.018 4.018 7 N -0.208 5.208 8 C -0.110 4.110 9 C -0.114 4.114 10 C -0.002 4.002 11 C 0.138 3.862 12 H 0.080 0.920 13 N -0.385 5.385 14 C -0.560 4.560 15 H 0.068 0.932 16 C -0.136 4.136 17 N -0.536 5.536 18 Si 0.720 3.280 19 H -0.209 1.209 20 H -0.212 1.212 21 H -0.200 1.200 22 C -0.125 4.125 23 H 0.071 0.929 24 H 0.078 0.922 25 H 0.070 0.930 26 H 0.087 0.913 27 H 0.081 0.919 28 H 0.125 0.875 29 H 0.124 0.876 30 H 0.091 0.909 31 H 0.035 0.965 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.037 0.963 36 H 0.171 0.829 37 H 0.117 0.883 38 H 0.072 0.928 39 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.198 -3.983 10.008 11.560 hybrid contribution 1.989 -0.366 0.144 2.027 sum -2.209 -4.349 10.151 11.263 Atomic orbital electron populations 1.21735 0.95225 1.00935 1.02281 1.20461 0.95816 0.93381 1.02050 1.19810 1.00323 0.95754 0.93412 1.20545 1.03503 0.94866 0.96780 1.21403 1.02513 0.95835 0.97510 1.18583 1.01074 0.89973 0.92177 1.59358 1.02766 1.04376 1.54329 1.22341 0.91385 1.02030 0.95209 1.22393 0.96274 0.96390 0.96388 1.20451 0.90945 0.92814 0.95960 1.17868 0.90416 0.94377 0.83529 0.91971 1.59629 1.59122 1.05686 1.14026 1.21645 0.94976 1.33605 1.05766 0.93232 1.24946 0.97464 0.94615 0.96571 1.69738 1.34614 1.35798 1.13480 0.86603 0.85584 0.77397 0.78396 1.20907 1.21245 1.20044 1.20827 1.00101 0.94685 0.96859 0.92946 0.92240 0.93048 0.91332 0.91905 0.87537 0.87602 0.90931 0.96457 0.91710 0.91601 0.91403 0.96292 0.82893 0.88313 0.92755 0.85959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.89 37.16 0.37 -1.39 16 2 C -0.08 -1.08 6.06 -27.88 -0.17 -1.25 16 3 C -0.09 -1.58 5.14 -104.59 -0.54 -2.12 16 4 C -0.14 -2.28 9.69 -39.61 -0.38 -2.66 16 5 C -0.15 -2.69 8.57 -39.38 -0.34 -3.02 16 6 C 0.08 1.54 4.71 -83.79 -0.39 1.15 16 7 N -0.49 -9.56 4.03 -186.85 -0.75 -10.31 16 8 C 0.04 0.64 9.34 60.07 0.56 1.21 16 9 C 0.03 0.53 9.38 60.06 0.56 1.10 16 10 C 0.00 -0.01 5.01 -104.42 -0.52 -0.53 16 11 C 0.25 6.26 2.64 -70.02 -0.18 6.07 16 12 H 0.06 1.77 7.63 -51.93 -0.40 1.37 16 13 N -0.85 -20.62 8.79 -6.65 -0.06 -20.67 16 14 C -0.52 -14.11 8.71 -34.44 -0.30 -14.41 16 15 H 0.05 1.38 7.74 -52.49 -0.41 0.98 16 16 C 0.07 1.78 5.38 -17.82 -0.10 1.68 16 17 N -0.90 -25.05 11.54 55.43 0.64 -24.41 16 18 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 22 C -0.11 -2.10 8.92 -39.61 -0.35 -2.46 16 23 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.07 0.90 8.08 -51.93 -0.42 0.48 16 27 H 0.06 0.76 8.08 -51.93 -0.42 0.34 16 28 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 29 H 0.11 1.66 7.02 -52.48 -0.37 1.29 16 30 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 31 H 0.02 0.26 7.12 -51.93 -0.37 -0.11 16 32 H 0.06 1.00 8.12 -51.93 -0.42 0.57 16 33 H 0.07 0.96 8.12 -51.93 -0.42 0.54 16 34 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.02 0.27 7.34 -51.93 -0.38 -0.11 16 36 H 0.35 9.18 7.08 -39.29 -0.28 8.90 16 37 H 0.31 7.02 7.20 -39.29 -0.28 6.74 16 38 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 39 H 0.12 2.39 6.29 -52.49 -0.33 2.06 16 LS Contribution 315.58 15.07 4.76 4.76 Total: -1.00 -28.34 315.58 -8.39 -36.73 By element: Atomic # 1 Polarization: 20.36 SS G_CDS: -6.17 Total: 14.19 kcal Atomic # 6 Polarization: -14.84 SS G_CDS: -1.79 Total: -16.62 kcal Atomic # 7 Polarization: -55.22 SS G_CDS: -0.17 Total: -55.40 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -28.34 -8.39 -36.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260461479.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.833 kcal (2) G-P(sol) polarization free energy of solvation -28.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds